Rroxscaffold_1G00062670

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000145
Physical Location & Seq
Forward (+)
84723103 .. 84727393
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062670.1

Sequence Viewer

Length: 360 bp
ATGGAGAACAGCAACTCAAAAGCGGACCAAATCGAGGTGGAGGTGTCTCGGTTCGAGAATGACTTTGATGTCGTCCCTTACACCAAGTTCTACGACGAATTCCTCAACGTGGATTTGCTGCAAGAAAGTTGGCCAAAAGTAGAATCTTCTTTAAAAGAATATGGCGTCTTATGCATCCCGGATGTGGTTGACGGTAAAATGAAAGTCTCCGAGCCACAAGGGATCAAGACCCAAATGTATTCTCGGGGCTATGGATGTTTTGGAGCTTTTGTCAACTTAGTGGAACTAACGAAAGGTGTTAATGAGGTCTTTTATTTTGATTGGTCTAGAGACATGATCCAAATTGTGAAGTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

4.47

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 230, 331
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 34, 109, 184
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 3 cut(s) 51, 211, 324
AlwI GGATC 2 cut(s) 230, 331
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 133
BbvI GCAGC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 51, 211, 324
BfaI CTAG 1 cut(s) 327
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 109, 184
BseGI GGATG 3 cut(s) 174, 187, 260
BseLI CCNNNNNNNGG 3 cut(s) 34, 109, 184
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 34, 109, 184
BsmAI GTCTC 3 cut(s) 51, 211, 324
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 2 cut(s) 222, 336
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 230, 331
BssMI GATC 2 cut(s) 222, 336
BssNI GRCGYC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 3 cut(s) 174, 187, 260
BstKTI GATC 2 cut(s) 225, 339
BstMAI GTCTC 3 cut(s) 51, 211, 324
BstMBI GATC 2 cut(s) 222, 336
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 174, 187, 260
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 154
CviAII CATG 1 cut(s) 334
CviJI RGCY 4 cut(s) 133, 214, 249, 266
CviKI_1 RGCY 4 cut(s) 133, 214, 249, 266
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 224, 338
DpnII GATC 2 cut(s) 222, 336
DraI TTTAAA 1 cut(s) 153
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 176
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 162, 172, 252, 335
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 3 cut(s) 161, 194, 267
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 2 cut(s) 190, 274
HindII GTYRAC 2 cut(s) 190, 274
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 190, 274
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 55, 226, 327
Hpy8I GTNNAC 2 cut(s) 190, 274
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 121, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 2 cut(s) 222, 336
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 224, 338
MboI GATC 2 cut(s) 222, 336
MboII GAAGA 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 2 cut(s) 98, 342
MluNI TGGCCA 1 cut(s) 133
MnlI CCTC 4 cut(s) 28, 34, 113, 298
Mox20I TGGCCA 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 176
MscI TGGCCA 1 cut(s) 133
MseI TTAA 2 cut(s) 152, 300
Msp20I TGGCCA 1 cut(s) 133
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 179
NdeII GATC 2 cut(s) 222, 336
NlaIII CATG 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 176
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 152, 300
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 222, 336
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 179
SetI ASST 6 cut(s) 39, 45, 111, 268, 298, 309
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 98, 342
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 33, 54
TasI AATT 2 cut(s) 98, 342
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 152, 300
Tru9I TTAA 2 cut(s) 152, 300
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 326
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.