Rroxscaffold_1G00062590

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000145
Physical Location & Seq
Forward (+)
84679714 .. 84683131
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062590.1

Sequence Viewer

Length: 717 bp
ATGGCTATCATGGAATCCTCCTTGGAAGATTACGGCCTTTCATGCAAACTGGATCTGGGTTTCACACCCAGACAAAACCCACATCTGCAATGGAGAACAGCAACTCAAAAGCGGACCAAATCGAGGTGGAGGTGTCTCGATCAGTTCGAGAATGACTTTGATGTCGTCTCTTACACCAAGTTCTACGACGAATTCCTCAACGTAGATTTGCTGCAAGAAAGTTGGCCAAAAGTAGAATCTTCTTTAAAAGAATATGGCGTCCTATGCACCCTGGATGTGGTTGAGGGTAAAATGAAAGTCTCCCGAGCCACAAGGGATCAAGACCCAAATATTATTCTCAGGGCTATGGATGTTTTGGAGCTTTTGTCAAGAAGTGTTCCGGCAGATTGGGCAATACGAGTACTGGATTGCAGTTTCCAGTATGAGATCATCAAGATTGGGAATCAAGAAGGAGGGCTTTGCAATATGTACGGGATCACAAAGAAGCAATTTCTCGCACGGAGGAAGCTTCTGGCTGGCTATGTCTTACAGGTACTGTTTGAACTGACATGTTGTGGAATTTTTGTTAGGGGAAACACCATTGCTGTGATTGGTGGTTCACTCCAAGGAATAAATATAGTAAGGAGGATTGTGGAAGACTGCATTGCTCATGATGTGCCTAGCTCGTCTACCCCGGGTGCGATTGATGAAAAAGAAGACTCAAAAGGAGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.91

Weight (kDa)

5.38

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 60 - 136 7.6e-15 Krr1 KH1 domain
KH_KRR1_2nd PF21800 159 - 217 2e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 668
AciI CCGC 1 cut(s) 112
AclWI GGATC 3 cut(s) 60, 324, 482
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 191, 558
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 402, 470, 534
AfiI CCNNNNNNNGG 2 cut(s) 123, 277
AflIII ACRYGT 1 cut(s) 548
AgsI TTSAA 1 cut(s) 542
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 361, 508, 663
AluI AGCT 3 cut(s) 361, 508, 663
Alw26I GTCTC 3 cut(s) 140, 172, 304
AlwI GGATC 3 cut(s) 60, 324, 482
AlwNI CAGNNNCTG 1 cut(s) 535
Ama87I CYCGRG 2 cut(s) 303, 673
AoxI GGCC 2 cut(s) 34, 224
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 191, 558
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 2 cut(s) 674, 675
AvaI CYCGRG 2 cut(s) 303, 673
AvaII GGWCC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 642, 702
BbvI GCAGC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 2 cut(s) 674, 675
BcoDI GTCTC 3 cut(s) 140, 172, 304
BfaI CTAG 1 cut(s) 660
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 3 cut(s) 272, 674, 675
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 2 cut(s) 303, 673
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 272, 674, 675
BpiI GAAGAC 2 cut(s) 642, 702
BpuMI CCSGG 2 cut(s) 674, 675
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 5 cut(s) 21, 270, 604, 672, 673
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 277
Bse1I ACTGG 3 cut(s) 54, 408, 418
Bse3DI GCAATG 3 cut(s) 95, 579, 642
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 5 cut(s) 21, 270, 604, 672, 673
BseGI GGATG 2 cut(s) 280, 355
BseLI CCNNNNNNNGG 2 cut(s) 123, 277
BseMI GCAATG 3 cut(s) 95, 579, 642
BseMII CTCAG 1 cut(s) 352
BseNI ACTGG 3 cut(s) 54, 408, 418
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 2 cut(s) 36, 226
BsiHKCI CYCGRG 2 cut(s) 303, 673
BsiSI CCGG 2 cut(s) 380, 674
BslI CCNNNNNNNGG 2 cut(s) 123, 277
BsmAI GTCTC 3 cut(s) 140, 172, 304
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 2 cut(s) 36, 226
BsoBI CYCGRG 2 cut(s) 303, 673
Bsp143I GATC 5 cut(s) 52, 139, 316, 426, 474
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 36, 226
BspCNI CTCAG 1 cut(s) 351
BspHI TCATGA 1 cut(s) 649
BspPI GGATC 3 cut(s) 60, 324, 482
BsrDI GCAATG 3 cut(s) 95, 579, 642
BsrI ACTGG 3 cut(s) 54, 408, 418
BssECI CCNNGG 5 cut(s) 21, 270, 604, 672, 673
BssMI GATC 5 cut(s) 52, 139, 316, 426, 474
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 21, 604
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 280, 355
BstKTI GATC 5 cut(s) 55, 142, 319, 429, 477
BstMAI GTCTC 3 cut(s) 140, 172, 304
BstMBI GATC 5 cut(s) 52, 139, 316, 426, 474
BstMWI GCNNNNNNNGC 3 cut(s) 42, 264, 389
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 3 cut(s) 270, 672, 673
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 2 cut(s) 642, 702
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 36, 226
BtsCI GGATG 2 cut(s) 280, 355
Cac8I GCNNGC 1 cut(s) 517
CaiI CAGNNNCTG 1 cut(s) 535
CciI TCATGA 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 114
Cfr9I CCCGGG 1 cut(s) 673
CseI GACGC 1 cut(s) 247
Csp6I GTAC 3 cut(s) 401, 469, 533
CviAII CATG 4 cut(s) 10, 42, 549, 650
CviQI GTAC 3 cut(s) 401, 469, 533
DdeI CTNAG 1 cut(s) 338
DpnI GATC 5 cut(s) 54, 141, 318, 428, 476
DpnII GATC 5 cut(s) 52, 139, 316, 426, 474
DraI TTTAAA 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 21, 604
Eco47I GGWCC 1 cut(s) 114
Eco88I CYCGRG 2 cut(s) 303, 673
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 21, 604
ErhI CCWWGG 2 cut(s) 21, 604
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 13, 45, 552, 653
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 4 cut(s) 9, 41, 548, 649
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 2 cut(s) 287, 362
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 660
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 2 cut(s) 36, 226
HapII CCGG 2 cut(s) 380, 674
HgaI GACGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 4 cut(s) 13, 45, 552, 653
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 14, 236, 442, 698
HpaII CCGG 2 cut(s) 380, 674
Hpy166II GTNNAC 2 cut(s) 599, 669
Hpy188III TCNNGA 8 cut(s) 137, 148, 303, 320, 369, 433, 446, 650
Hpy8I GTNNAC 2 cut(s) 599, 669
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 443, 704
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 7 cut(s) 45, 88, 214, 267, 411, 462, 642
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 264, 389
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 4 cut(s) 13, 45, 552, 653
Kzo9I GATC 5 cut(s) 52, 139, 316, 426, 474
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 1 cut(s) 660
MaeII ACGT 1 cut(s) 201
MalI GATC 5 cut(s) 54, 141, 318, 428, 476
MboI GATC 5 cut(s) 52, 139, 316, 426, 474
MboII GAAGA 4 cut(s) 38, 231, 647, 707
MflI RGATCY 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 226
MluCI AATT 3 cut(s) 191, 488, 558
MluNI TGGCCA 1 cut(s) 226
MlyI GAGTC 1 cut(s) 692
MnlI CCTC 8 cut(s) 28, 117, 123, 206, 277, 446, 495, 618
Mox20I TGGCCA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 226
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 226
MspI CCGG 2 cut(s) 380, 674
MspR9I CCNGG 3 cut(s) 272, 674, 675
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 42, 264, 389
NciI CCSGG 2 cut(s) 674, 675
NdeII GATC 5 cut(s) 52, 139, 316, 426, 474
NlaIII CATG 4 cut(s) 13, 45, 552, 653
NspI RCATGY 1 cut(s) 552
PagI TCATGA 1 cut(s) 649
PciI ACATGT 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 3 cut(s) 14, 236, 442
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
PscI ACATGT 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspPI GGNCC 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 3 cut(s) 402, 470, 534
RsaNI GTAC 3 cut(s) 401, 469, 533
RseI CAYNNNNRTG 1 cut(s) 584
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 5 cut(s) 52, 139, 316, 426, 474
Sau96I GGNCC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 402
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 3 cut(s) 272, 674, 675
SetI ASST 7 cut(s) 128, 134, 204, 363, 510, 534, 665
SinI GGWCC 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 584
Sse9I AATT 3 cut(s) 191, 488, 558
SsiI CCGC 1 cut(s) 112
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 660
StyD4I CCNGG 3 cut(s) 270, 672, 673
StyI CCWWGG 2 cut(s) 21, 604
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 122, 138, 147
TasI AATT 3 cut(s) 191, 488, 558
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 3 cut(s) 14, 236, 442
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 30, 308, 702
TspGWI ACGGA 1 cut(s) 514
TspMI CCCGGG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 2 cut(s) 191, 558
XceI RCATGY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 87
XmaI CCCGGG 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.