Rorug05G0014900

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000145
Physical Location & Seq
Reverse (-)
977708 .. 979102
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0014900.1

Sequence Viewer

Length: 630 bp
ATGGACGACGGCGATGTGGCCACGGCAGGGAGGAGGAGCTTCAAGCAGCGGCTGAGATTGACCGGAATCGGGTGCTGCGGCGCCGTCTGGGGATTTGGACGGACGGCCACGATCACCGTCGAGGACGATGAAGAACAACACCACGTACATCCGCCGCAACAACAACCGCGGCAGCAGCTGCCGAACCTATCGCAGCTGCTGATTCTGGGGCAGGCGGCCGGGTCCGATTCGGATCCGGGTTGCCTGGGTCCGGTCAACTCCGGGTCGGGGATGAACCTCGCCGCGGCTCTGGCGGCGGAACGGCATTATCGGGAGGCGGACGAGGCCGCGTCGGGTGGTGGGGCGGCGCCGGGGACGCCGATGAGGGTGTCGCTGATGAGATTGCTGGAGGAGACGGAAATGGACGGGTGCGACGCGGCGGAGGAGAAGAATGATAAAGCGGCGGCGGCGGCGGCGGGGGTGGTGGGTTGTGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATACCATGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGGTGTGGCTGAATCGAGGCTCCTGTCCCCTCTGCAACCGTACGATCCTCGAGATTCTCGATATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.06

Weight (kDa)

5.37

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 159 - 203 4.6e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 161 - 198 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 161 - 198 1.3e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 161 - 202 5.9e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 80, 346
AccII CGCG 5 cut(s) 169, 284, 329, 416, 512
AclWI GGATC 3 cut(s) 227, 240, 598
AcoI YGGCCR 3 cut(s) 18, 105, 216
AcyI GRCGYC 3 cut(s) 81, 347, 356
AfaI GTAC 2 cut(s) 147, 601
AfiI CCNNNNNNNGG 5 cut(s) 27, 69, 250, 267, 283
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 39, 178, 196
AluI AGCT 3 cut(s) 39, 178, 196
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 3 cut(s) 227, 240, 598
AlwNI CAGNNNCTG 3 cut(s) 52, 178, 199
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 4 cut(s) 18, 105, 216, 324
ApeKI GCWGC 8 cut(s) 46, 75, 172, 175, 178, 193, 196, 483
AspLEI GCGC 3 cut(s) 83, 349, 512
AspS9I GGNCC 2 cut(s) 222, 248
AsuC2I CCSGG 4 cut(s) 220, 237, 262, 351
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 2 cut(s) 222, 248
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 2 cut(s) 80, 346
BbvI GCAGC 8 cut(s) 58, 62, 165, 183, 184, 187, 205, 470
BceAI ACGGC 5 cut(s) 25, 39, 68, 120, 317
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 4 cut(s) 220, 237, 262, 351
BcoDI GTCTC 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 84, 350
Bme1390I CCNGG 5 cut(s) 220, 237, 245, 262, 351
Bme18I GGWCC 2 cut(s) 222, 248
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 222, 248
BmiI GGNNCC 6 cut(s) 82, 223, 234, 249, 348, 580
BmrFI CCNGG 5 cut(s) 220, 237, 245, 262, 351
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 4 cut(s) 220, 237, 262, 351
BsaAI YACGTR 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 3 cut(s) 81, 347, 356
BsaJI CCNNGG 5 cut(s) 21, 167, 244, 282, 350
BsaWI WCCGGW 2 cut(s) 62, 250
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 69, 250, 267, 283
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 5 cut(s) 21, 167, 244, 282, 350
BseGI GGATG 2 cut(s) 148, 276
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 27, 69, 250, 267, 283
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 4 cut(s) 46, 49, 404, 437
BseSI GKGCMC 1 cut(s) 534
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 8 cut(s) 58, 62, 165, 183, 184, 187, 205, 470
Bsh1236I CGCG 5 cut(s) 169, 284, 329, 416, 512
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 20, 107, 218, 326
BshNI GGYRCC 2 cut(s) 80, 346
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 6 cut(s) 63, 219, 236, 251, 261, 350
BsiWI CGTACG 1 cut(s) 599
BslFI GGGAC 2 cut(s) 367, 570
BslI CCNNNNNNNGG 5 cut(s) 27, 69, 250, 267, 283
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 367, 570
BsnI GGCC 4 cut(s) 20, 107, 218, 326
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 111, 232, 603
BspANI GGCC 4 cut(s) 20, 107, 218, 326
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 5 cut(s) 169, 284, 329, 416, 512
BspLI GGNNCC 6 cut(s) 82, 223, 234, 249, 348, 580
BspPI GGATC 3 cut(s) 227, 240, 598
BspT107I GGYRCC 2 cut(s) 80, 346
BssECI CCNNGG 5 cut(s) 21, 167, 244, 282, 350
BssMI GATC 3 cut(s) 111, 232, 603
BssNI GRCGYC 3 cut(s) 81, 347, 356
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 118, 599
BstACI GRCGYC 3 cut(s) 81, 347, 356
BstAPI GCANNNNNTGC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 3 cut(s) 21, 167, 282
BstF5I GGATG 2 cut(s) 148, 276
BstFNI CGCG 5 cut(s) 169, 284, 329, 416, 512
BstH2I RGCGCY 2 cut(s) 84, 350
BstHHI GCGC 3 cut(s) 83, 349, 512
BstKTI GATC 3 cut(s) 114, 235, 606
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 3 cut(s) 111, 232, 603
BstMCI CGRYCG 1 cut(s) 219
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 5 cut(s) 218, 235, 243, 260, 349
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 5 cut(s) 169, 284, 329, 416, 512
BstV1I GCAGC 8 cut(s) 58, 62, 165, 183, 184, 187, 205, 470
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 20, 107, 218, 326
BtgI CCRYGG 3 cut(s) 21, 167, 282
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 148, 276
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 3 cut(s) 52, 178, 199
CfoI GCGC 3 cut(s) 83, 349, 512
Cfr13I GGNCC 2 cut(s) 222, 248
Cfr42I CCGCGG 2 cut(s) 170, 285
CseI GACGC 3 cut(s) 318, 364, 422
Csp6I GTAC 2 cut(s) 146, 600
CviAII CATG 2 cut(s) 493, 525
CviQI GTAC 2 cut(s) 146, 600
DdeI CTNAG 1 cut(s) 53
DinI GGCGCC 2 cut(s) 82, 348
DpnI GATC 3 cut(s) 113, 234, 605
DpnII GATC 3 cut(s) 111, 232, 603
EaeI YGGCCR 3 cut(s) 18, 105, 216
EagI CGGCCG 1 cut(s) 216
EciI GGCGGA 4 cut(s) 141, 311, 332, 434
EclXI CGGCCG 1 cut(s) 216
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 222, 248
Eco52I CGGCCG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 622
EgeI GGCGCC 2 cut(s) 82, 348
EheI GGCGCC 2 cut(s) 82, 348
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 2 cut(s) 496, 528
FaiI YATR 3 cut(s) 494, 521, 526
FaqI GGGAC 2 cut(s) 367, 570
FatI CATG 2 cut(s) 492, 524
FauI CCCGC 1 cut(s) 448
FokI GGATG 2 cut(s) 135, 283
GlaI GCGC 3 cut(s) 82, 348, 511
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 2 cut(s) 84, 350
HaeIII GGCC 4 cut(s) 20, 107, 218, 326
HapII CCGG 6 cut(s) 63, 219, 236, 251, 261, 350
HgaI GACGC 3 cut(s) 318, 364, 422
HhaI GCGC 3 cut(s) 83, 349, 512
Hin1I GRCGYC 3 cut(s) 81, 347, 356
Hin1II CATG 2 cut(s) 496, 528
Hin6I GCGC 3 cut(s) 81, 347, 510
HinP1I GCGC 3 cut(s) 81, 347, 510
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 6 cut(s) 66, 202, 227, 473, 571, 613
HpaII CCGG 6 cut(s) 63, 219, 236, 251, 261, 350
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 226, 232, 629
Hpy188III TCNNGA 3 cut(s) 311, 610, 617
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 4 cut(s) 11, 122, 334, 416
HpyCH4III ACNGT 2 cut(s) 118, 599
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 492, 543, 594
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 3 cut(s) 81, 347, 356
Hsp92II CATG 2 cut(s) 496, 528
HspAI GCGC 3 cut(s) 81, 347, 510
KasI GGCGCC 2 cut(s) 80, 346
KspI CCGCGG 2 cut(s) 170, 285
Kzo9I GATC 3 cut(s) 111, 232, 603
LmnI GCTCC 2 cut(s) 36, 584
Lsp1109I GCAGC 8 cut(s) 58, 62, 165, 183, 184, 187, 205, 470
MaeII ACGT 1 cut(s) 144
MalI GATC 3 cut(s) 113, 234, 605
MboI GATC 3 cut(s) 111, 232, 603
MboII GAAGA 4 cut(s) 143, 439, 514, 616
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 20
Mly113I GGCGCC 2 cut(s) 81, 347
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 5 cut(s) 49, 169, 178, 196, 284
MspI CCGG 6 cut(s) 63, 219, 236, 251, 261, 350
MspR9I CCNGG 5 cut(s) 220, 237, 245, 262, 351
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 5 cut(s) 169, 284, 329, 416, 512
NarI GGCGCC 2 cut(s) 81, 347
NciI CCSGG 4 cut(s) 220, 237, 262, 351
NdeII GATC 3 cut(s) 111, 232, 603
NlaIII CATG 2 cut(s) 496, 528
NlaIV GGNNCC 6 cut(s) 82, 223, 234, 249, 348, 580
PaeR7I CTCGAG 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 6 cut(s) 66, 202, 227, 473, 571, 613
Pfl23II CGTACG 1 cut(s) 599
PluTI GGCGCC 2 cut(s) 84, 350
Ppu21I YACGTR 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspLI CGTACG 1 cut(s) 599
PspN4I GGNNCC 6 cut(s) 82, 223, 234, 249, 348, 580
PspPI GGNCC 2 cut(s) 222, 248
PstNI CAGNNNCTG 3 cut(s) 52, 178, 199
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 178, 196
RsaI GTAC 2 cut(s) 147, 601
RsaNI GTAC 2 cut(s) 146, 600
SacII CCGCGG 2 cut(s) 170, 285
Sau3AI GATC 3 cut(s) 111, 232, 603
Sau96I GGNCC 2 cut(s) 222, 248
ScrFI CCNGG 5 cut(s) 220, 237, 245, 262, 351
SduI GDGCHC 1 cut(s) 534
SetI ASST 7 cut(s) 41, 147, 180, 189, 198, 279, 564
SfoI GGCGCC 2 cut(s) 82, 348
Sfr274I CTCGAG 1 cut(s) 608
Sfr303I CCGCGG 2 cut(s) 170, 285
SgrBI CCGCGG 2 cut(s) 170, 285
SinI GGWCC 2 cut(s) 222, 248
SlaI CTCGAG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SspDI GGCGCC 2 cut(s) 80, 346
StyD4I CCNGG 5 cut(s) 218, 235, 243, 260, 349
TaaI ACNGT 2 cut(s) 118, 599
TaiI ACGT 1 cut(s) 147
TaqI TCGA 5 cut(s) 120, 554, 574, 609, 618
TfiI GAWTC 6 cut(s) 66, 202, 227, 473, 571, 613
TseI GCWGC 8 cut(s) 46, 75, 172, 175, 178, 193, 196, 483
TspDTI ATGAA 3 cut(s) 144, 287, 508
TspGWI ACGGA 2 cut(s) 115, 410
VpaK11BI GGWCC 2 cut(s) 222, 248
XhoI CTCGAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.