Rh7BG110600

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000145
Physical Location & Seq
Reverse (-)
8335584 .. 8336925
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG110600.1

Sequence Viewer

Length: 420 bp
ATGCATCCAGTTATTGTGGACCAGGCTGGGGCTTTTCTTGAACTTTTGTCTACAACTAGTATTCCGGCAACTAAGGCAGCAGAAATATTGAATGGCCGCCTGCAATATGAAGTCATCAAGACTGCGTTTCAGGATGGTGGACTTTGCGCAAAATATGAGATTGAGAAGGACTGTGCTAAAAACAGGGAACGGTTGAATCGCAACTCACGGGCAGTTGCACGCCTTTTGAAGTGTGATATTTACATAAATGAATGCAGGGTGGTTGCAGTAGGGAATTCAGCTTCAGGATTGAGGCTGTTCAGGTCAGTTGTGGAATGCTGTTTTATGAAAAACGAAGATCCTGTAGCTGTTGCCAGGAGGTTAAAGCTGGATCGTAAAGTGTCCCGATTGATGAAGAAAATTCAAGCTTTGTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

9.42

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 148
AccI GTMKAC 1 cut(s) 50
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 332, 378
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 274, 399
AcuI CTGAAG 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 5 cut(s) 41, 91, 196, 229, 404
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 2 cut(s) 21, 353
AluBI AGCT 4 cut(s) 281, 347, 367, 407
AluI AGCT 4 cut(s) 281, 347, 367, 407
AlwI GGATC 2 cut(s) 332, 378
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 274, 399
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 23, 355
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 2 cut(s) 78, 97
BlsI GCNGC 2 cut(s) 79, 98
Bme1390I CCNGG 2 cut(s) 23, 355
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 23, 355
BmsI GCATC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 8
BseBI CCWGG 2 cut(s) 23, 355
BseGI GGATG 2 cut(s) 4, 139
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 2 cut(s) 257, 320
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 337, 370
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 96
BspPI GGATC 2 cut(s) 332, 378
BsrI ACTGG 1 cut(s) 8
BssMI GATC 2 cut(s) 337, 370
Bst2UI CCWGG 2 cut(s) 23, 355
Bst4CI ACNGT 2 cut(s) 173, 192
BstC8I GCNNGC 2 cut(s) 101, 220
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 4, 139
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 2 cut(s) 340, 373
BstMBI GATC 2 cut(s) 337, 370
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 2 cut(s) 23, 355
BstSCI CCNGG 2 cut(s) 21, 353
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 4, 139
Cac8I GCNNGC 2 cut(s) 101, 220
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 19
CviJI RGCY 8 cut(s) 26, 32, 96, 281, 295, 347, 367, 407
CviKI_1 RGCY 8 cut(s) 26, 32, 96, 281, 295, 347, 367, 407
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 339, 372
DpnII GATC 2 cut(s) 337, 370
EaeI YGGCCR 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 21, 353
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 4 cut(s) 108, 156, 245, 326
FaqI GGGAC 1 cut(s) 367
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 78, 97
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 78, 97
FspBI CTAG 1 cut(s) 57
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 78, 97
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 3 cut(s) 19, 51, 140
Hpy188III TCNNGA 5 cut(s) 38, 118, 131, 285, 384
Hpy8I GTNNAC 3 cut(s) 19, 51, 140
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 173, 192
HpyCH4V TGCA 5 cut(s) 4, 103, 218, 255, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 72
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 337, 370
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 57
MalI GATC 2 cut(s) 339, 372
MboI GATC 2 cut(s) 337, 370
MboII GAAGA 2 cut(s) 347, 406
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 274, 399
MnlI CCTC 2 cut(s) 285, 351
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 362
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 23, 355
Mva1269I GAATGC 2 cut(s) 257, 320
MvaI CCWGG 2 cut(s) 23, 355
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 337, 370
NsbI TGCGCA 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 2 cut(s) 257, 320
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 79, 98
Psp6I CCWGG 2 cut(s) 21, 353
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 2 cut(s) 21, 353
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 337
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 2 cut(s) 78, 97
Sau3AI GATC 2 cut(s) 337, 370
Sau96I GGNCC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 23, 355
SetI ASST 6 cut(s) 283, 305, 349, 362, 369, 409
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 19
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 2 cut(s) 274, 399
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 87
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 21, 353
TaaI ACNGT 2 cut(s) 173, 192
TasI AATT 2 cut(s) 274, 399
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 123, 264, 341, 407
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 2 cut(s) 274, 399
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.