FvH4_3g36460

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000145
Physical Location & Seq
Reverse (-)
31245609 .. 31249029
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36460.t2

Sequence Viewer

Length: 1365 bp
ATGATGGAGAAGAGCGATACGACGATGACAGAGAAGAGCGATTACCTCGTCGGCGAGCCTTTGAACCGCAGGTGGATCTCCGATTCAAACCGAGAAAAGTTGAGAGAAGCTTGGCCGATCGTCAAATCGTTATTGGAAGAAGTCGGGATTTCATGCTCGATGGATACGGTTGATTCCGCAGTCACAGTGGAGTCACTCTGCTCTACAGACCCACTTATCATGCGCAAGGCAAATTATCTTTTCCAGCTTTTGTGCAAGACTACTGTTCCGGCACCTCTGGCAATAGAGTTGGCACTCCAAGGCAGGCAACATGATCACATCAAGCTTGGCACACAAAATGGTGGGATGTGCAAAAAAAATGGGATCAACAAGGAGAATTTTCATAAACTGCGGAGAGGGCTCAAACGCTCTTTAAAGGAACTTGAAGATCTGACCCACTGTACTCTTTTTCTGGACAAGAGCACTCTTACTGCCGTGGGTCCTTCTCCAAGACTATGGTGGGTCAGGAATGTTTGGAATTTCTCCATTACTGGAAAGTTAAGCCCTGCACATGTTATAAGGGTTTTCAACCGGAAGCTGAAACGAACAACAATGAAAATGGGCAACAGCGATACTATGATGATGGGGAAGAGTGATTTCTGCGTCCTTGAGCAGCCAAAAATCAATCACCAAGTGAGCCACCCTCTTCCGATGCAGAACAGTGATACTATGCTGATGGAGGAAAGTGATTTGTGTGTCCTTGAGCAGCCGAAATTCAGTCACAAACTTAGCGACCCCTTCCCGATAACGGAGAAATGCGATTTCGGCCACCTTGAGCAGCCGAAATTCAGTGACGAATTTAGCGACCATCTTCAGATGGAGAGCTGCAGGTCTTTCCGTCTTATCTCCCCTGAAAACCAAGCCAAGTTGAAAGAAGCTTGGCCGATGGTCGAATCTTCCTTAGAAGAACTTGGGTATATGTGCGCAATGAGTACGGTTGATTCCACAGTGTTAGTTGTATCACCCGGCTCTACAGACCCAGATATCATGCGCAAGGCAAAATATCTTTTCAAGCTTTTGTGCAAGACTCCTGTTCCGGCACCTCTGGCAATAGAGTTGGCACTCCATGGCAGGCAACATGATCTCATCAAGCTTGGCACTCAAAAGGGTGGGATGTGCAAAAAATATGGGATTAACAGGGACGAATTTCATAAACTGCAGAGACGTCTCAAACGCTCTTTAAAGGAACTTGAAGCTCTGACCCACTGCTCTTTTTCTGGACAAGACAACTCTTACTGCCGTGGGTCCATCTCCAAGATTACGCTGGGTCAGGAATGTTCTGAAATTCTCCATTCCTGGAAAGTTAAGTCCTGCACATGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

51.65

Weight (kDa)

8.71

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AarI CACCTGC 1 cut(s) 60
AatII GACGTC 1 cut(s) 1207
Acc16I TGCGCA 3 cut(s) 224, 964, 1031
Acc36I ACCTGC 2 cut(s) 60, 858
AccB1I GGYRCC 2 cut(s) 271, 1078
AciI CCGC 3 cut(s) 67, 177, 391
AclWI GGATC 2 cut(s) 83, 371
AcoI YGGCCR 3 cut(s) 113, 805, 920
AcsI RAATTY 7 cut(s) 376, 517, 752, 824, 836, 1184, 1323
AcuI CTGAAG 1 cut(s) 836
AcyI GRCGYC 1 cut(s) 1204
AdeI CACNNNGTG 1 cut(s) 673
AfaI GTAC 2 cut(s) 442, 973
AfiI CCNNNNNNNGG 1 cut(s) 787
AflIII ACRYGT 2 cut(s) 550, 1355
AgsI TTSAA 7 cut(s) 64, 87, 425, 568, 910, 1051, 1232
AjnI CCWGG 1 cut(s) 1334
AluBI AGCT 9 cut(s) 110, 247, 325, 577, 864, 917, 1054, 1132, 1235
AluI AGCT 9 cut(s) 110, 247, 325, 577, 864, 917, 1054, 1132, 1235
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 1195, 1211
AlwI GGATC 2 cut(s) 83, 371
AoxI GGCC 3 cut(s) 113, 805, 920
ApeKI GCWGC 4 cut(s) 652, 745, 817, 864
ApoI RAATTY 7 cut(s) 376, 517, 752, 824, 836, 1184, 1323
AspLEI GCGC 3 cut(s) 225, 965, 1032
AspS9I GGNCC 2 cut(s) 479, 1284
AsuC2I CCSGG 1 cut(s) 1005
AsuHPI GGTGA 2 cut(s) 659, 993
AvaII GGWCC 2 cut(s) 479, 1284
BanI GGYRCC 2 cut(s) 271, 1078
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 4 cut(s) 664, 757, 829, 851
BccI CCATC 7 cut(s) 154, 616, 709, 850, 855, 919, 1295
BceAI ACGGC 2 cut(s) 458, 1263
BciT130I CCWGG 1 cut(s) 1336
BciVI GTATCC 1 cut(s) 157
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 1005
BcoDI GTCTC 2 cut(s) 1195, 1211
BfmI CTRYAG 4 cut(s) 204, 865, 1011, 1196
BfuAI ACCTGC 2 cut(s) 60, 858
BfuI GTATCC 1 cut(s) 157
BglII AGATCT 1 cut(s) 427
BisI GCNGC 4 cut(s) 653, 746, 818, 865
BlsI GCNGC 4 cut(s) 654, 747, 819, 866
Bme1390I CCNGG 2 cut(s) 1005, 1336
Bme18I GGWCC 2 cut(s) 479, 1284
BmgT120I GGNCC 2 cut(s) 479, 1284
BmiI GGNNCC 4 cut(s) 273, 480, 1080, 1285
BmrFI CCNGG 2 cut(s) 1005, 1336
BmsI GCATC 1 cut(s) 681
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpuEI CTTGAG 3 cut(s) 668, 761, 833
BpuMI CCSGG 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 1204
BsaJI CCNNGG 4 cut(s) 298, 474, 1105, 1279
BsaWI WCCGGW 1 cut(s) 570
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 1 cut(s) 1336
BseDI CCNNGG 4 cut(s) 298, 474, 1105, 1279
BseGI GGATG 2 cut(s) 351, 1158
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMI GCAATG 1 cut(s) 972
BseNI ACTGG 1 cut(s) 535
BseXI GCAGC 4 cut(s) 664, 757, 829, 851
BseYI CCCAGC 1 cut(s) 1303
BsgI GTGCAG 2 cut(s) 531, 1336
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 115, 807, 922
BshNI GGYRCC 2 cut(s) 271, 1078
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 4 cut(s) 269, 571, 1005, 1076
BslFI GGGAC 1 cut(s) 1193
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 2 cut(s) 1195, 1211
BsmBI CGTCTC 2 cut(s) 1195, 1211
BsmFI GGGAC 1 cut(s) 1193
BsnI GGCC 3 cut(s) 115, 807, 922
Bsp1286I GDGCHC 2 cut(s) 402, 464
Bsp143I GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 3 cut(s) 67, 177, 391
BspANI GGCC 3 cut(s) 115, 807, 922
BspLI GGNNCC 4 cut(s) 273, 480, 1080, 1285
BspMAI CTGCAG 2 cut(s) 869, 1200
BspMI ACCTGC 2 cut(s) 60, 858
BspPI GGATC 2 cut(s) 83, 371
BspQI GCTCTTC 2 cut(s) 5, 29
BspT107I GGYRCC 2 cut(s) 271, 1078
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 4 cut(s) 298, 474, 1105, 1279
BssMI GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
BssNI GRCGYC 1 cut(s) 1204
BssT1I CCWWGG 2 cut(s) 298, 1105
Bst2UI CCWGG 1 cut(s) 1336
Bst4CI ACNGT 7 cut(s) 169, 187, 265, 440, 701, 976, 988
Bst6I CTCTTC 4 cut(s) 5, 29, 623, 690
BstACI GRCGYC 1 cut(s) 1204
BstC8I GCNNGC 3 cut(s) 56, 305, 1112
BstDEI CTNAG 2 cut(s) 767, 940
BstDSI CCRYGG 3 cut(s) 474, 1105, 1279
BstF5I GGATG 2 cut(s) 351, 1158
BstHHI GCGC 3 cut(s) 225, 965, 1032
BstKTI GATC 6 cut(s) 78, 120, 316, 366, 430, 1123
BstMAI GTCTC 2 cut(s) 1195, 1211
BstMBI GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 278, 397, 804, 1085
BstNI CCWGG 1 cut(s) 1336
BstNSI RCATGY 2 cut(s) 554, 1359
BstSCI CCNGG 2 cut(s) 1003, 1334
BstSFI CTRYAG 4 cut(s) 204, 865, 1011, 1196
BstV1I GCAGC 4 cut(s) 664, 757, 829, 851
BstX2I RGATCY 2 cut(s) 75, 427
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 2 cut(s) 75, 427
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 115, 807, 922
BtgI CCRYGG 3 cut(s) 474, 1105, 1279
BtsCI GGATG 2 cut(s) 351, 1158
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 6 cut(s) 192, 436, 706, 835, 993, 1243
BveI ACCTGC 2 cut(s) 60, 858
Cac8I GCNNGC 3 cut(s) 56, 305, 1112
CfoI GCGC 3 cut(s) 225, 965, 1032
Cfr13I GGNCC 2 cut(s) 479, 1284
CseI GACGC 1 cut(s) 631
Csp6I GTAC 2 cut(s) 441, 972
CviAII CATG 8 cut(s) 153, 220, 311, 551, 1027, 1106, 1118, 1356
CviQI GTAC 2 cut(s) 441, 972
DdeI CTNAG 2 cut(s) 767, 940
DpnI GATC 6 cut(s) 77, 119, 315, 365, 429, 1122
DpnII GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
DraI TTTAAA 2 cut(s) 414, 1221
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 3 cut(s) 113, 805, 920
Eam1104I CTCTTC 4 cut(s) 5, 29, 623, 690
EarI CTCTTC 4 cut(s) 5, 29, 623, 690
Eco130I CCWWGG 2 cut(s) 298, 1105
Eco24I GRGCYC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 1024
Eco47I GGWCC 2 cut(s) 479, 1284
Eco57I CTGAAG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 1334
EcoRV GATATC 1 cut(s) 1024
EcoT14I CCWWGG 2 cut(s) 298, 1105
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 298, 1105
Esp3I CGTCTC 2 cut(s) 1195, 1211
FaeI CATG 8 cut(s) 156, 223, 314, 554, 1030, 1109, 1121, 1359
FaqI GGGAC 1 cut(s) 1193
FatI CATG 8 cut(s) 152, 219, 310, 550, 1026, 1105, 1117, 1355
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 653, 746, 818, 865
FokI GGATG 2 cut(s) 358, 1165
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 653, 746, 818, 865
FspI TGCGCA 3 cut(s) 224, 964, 1031
GlaI GCGC 3 cut(s) 224, 964, 1031
GluI GCNGC 4 cut(s) 653, 746, 818, 865
GsaI CCCAGC 1 cut(s) 1307
HaeIII GGCC 3 cut(s) 115, 807, 922
HapII CCGG 4 cut(s) 269, 571, 1005, 1076
HgaI GACGC 1 cut(s) 631
HhaI GCGC 3 cut(s) 225, 965, 1032
Hin1I GRCGYC 1 cut(s) 1204
Hin1II CATG 8 cut(s) 156, 223, 314, 554, 1030, 1109, 1121, 1359
Hin6I GCGC 3 cut(s) 223, 963, 1030
HinP1I GCGC 3 cut(s) 223, 963, 1030
HindIII AAGCTT 5 cut(s) 108, 323, 915, 1052, 1130
HinfI GANTC 6 cut(s) 83, 173, 191, 932, 980, 1066
HpaII CCGG 4 cut(s) 269, 571, 1005, 1076
HphI GGTGA 2 cut(s) 659, 993
Hpy188I TCNGA 6 cut(s) 82, 432, 690, 855, 1239, 1321
Hpy188III TCNNGA 6 cut(s) 145, 452, 505, 781, 1257, 1310
Hpy99I CGWCG 2 cut(s) 25, 53
HpyAV CCTTC 2 cut(s) 492, 787
HpyCH4III ACNGT 7 cut(s) 169, 187, 265, 440, 701, 976, 988
HpyCH4IV ACGT 1 cut(s) 1204
HpyCH4V TGCA 9 cut(s) 255, 351, 548, 694, 867, 1062, 1158, 1198, 1353
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 397, 804, 1085
HpyF3I CTNAG 2 cut(s) 767, 940
HpySE526I ACGT 1 cut(s) 1204
Hsp92I GRCGYC 1 cut(s) 1204
Hsp92II CATG 8 cut(s) 156, 223, 314, 554, 1030, 1109, 1121, 1359
HspAI GCGC 3 cut(s) 223, 963, 1030
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
LguI GCTCTTC 2 cut(s) 5, 29
Lsp1109I GCAGC 4 cut(s) 664, 757, 829, 851
LweI GCATC 1 cut(s) 681
MaeII ACGT 1 cut(s) 1204
MaeIII GTNAC 4 cut(s) 181, 192, 758, 830
MalI GATC 6 cut(s) 77, 119, 315, 365, 429, 1122
MboI GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
MboII GAAGA 9 cut(s) 22, 46, 149, 437, 640, 677, 842, 927, 956
MflI RGATCY 2 cut(s) 75, 427
MhlI GDGCHC 2 cut(s) 402, 464
MluCI AATT 8 cut(s) 232, 376, 517, 752, 824, 836, 1184, 1323
MlyI GAGTC 2 cut(s) 200, 1060
MnlI CCTC 6 cut(s) 56, 285, 389, 693, 712, 1092
MseI TTAA 5 cut(s) 413, 539, 1173, 1220, 1344
MspI CCGG 4 cut(s) 269, 571, 1005, 1076
MspR9I CCNGG 2 cut(s) 1005, 1336
MvaI CCWGG 1 cut(s) 1336
MwoI GCNNNNNNNGC 4 cut(s) 278, 397, 804, 1085
NciI CCSGG 1 cut(s) 1005
NcoI CCATGG 1 cut(s) 1105
NdeII GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
NlaIII CATG 8 cut(s) 156, 223, 314, 554, 1030, 1109, 1121, 1359
NlaIV GGNNCC 4 cut(s) 273, 480, 1080, 1285
NmuCI GTSAC 4 cut(s) 181, 192, 758, 830
NsbI TGCGCA 3 cut(s) 224, 964, 1031
NspI RCATGY 2 cut(s) 554, 1359
PaqCI CACCTGC 1 cut(s) 60
PciI ACATGT 2 cut(s) 550, 1355
PciSI GCTCTTC 2 cut(s) 5, 29
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PfeI GAWTC 4 cut(s) 83, 173, 932, 980
PfoI TCCNGGA 1 cut(s) 1334
PkrI GCNGC 4 cut(s) 654, 747, 819, 866
Ple19I CGATCG 1 cut(s) 120
PleI GAGTC 2 cut(s) 199, 1060
PpsI GAGTC 2 cut(s) 199, 1060
PpuMI RGGWCCY 1 cut(s) 479
PscI ACATGT 2 cut(s) 550, 1355
PsiI TTATAA 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 1334
PspFI CCCAGC 1 cut(s) 1303
PspGI CCWGG 1 cut(s) 1334
PspN4I GGNNCC 4 cut(s) 273, 480, 1080, 1285
PspPI GGNCC 2 cut(s) 479, 1284
PspPPI RGGWCCY 1 cut(s) 479
PstI CTGCAG 2 cut(s) 869, 1200
PsuI RGATCY 2 cut(s) 75, 427
PvuI CGATCG 1 cut(s) 120
RsaI GTAC 2 cut(s) 442, 973
RsaNI GTAC 2 cut(s) 441, 972
SapI GCTCTTC 2 cut(s) 5, 29
SaqAI TTAA 5 cut(s) 413, 539, 1173, 1220, 1344
SatI GCNGC 4 cut(s) 653, 746, 818, 865
Sau3AI GATC 6 cut(s) 75, 117, 313, 363, 427, 1120
Sau96I GGNCC 2 cut(s) 479, 1284
SchI GAGTC 2 cut(s) 200, 1060
ScrFI CCNGG 2 cut(s) 1005, 1336
SduI GDGCHC 2 cut(s) 402, 464
SfaNI GCATC 1 cut(s) 681
SfcI CTRYAG 4 cut(s) 204, 865, 1011, 1196
SinI GGWCC 2 cut(s) 479, 1284
SmlI CTYRAG 3 cut(s) 647, 740, 812
SmoI CTYRAG 3 cut(s) 647, 740, 812
Sse9I AATT 8 cut(s) 232, 376, 517, 752, 824, 836, 1184, 1323
SsiI CCGC 3 cut(s) 67, 177, 391
StyD4I CCNGG 2 cut(s) 1003, 1334
StyI CCWWGG 2 cut(s) 298, 1105
TaaI ACNGT 7 cut(s) 169, 187, 265, 440, 701, 976, 988
TaiI ACGT 1 cut(s) 1207
TaqI TCGA 2 cut(s) 158, 930
TasI AATT 8 cut(s) 232, 376, 517, 752, 824, 836, 1184, 1323
TatI WGTACW 1 cut(s) 440
TfiI GAWTC 4 cut(s) 83, 173, 932, 980
Tru1I TTAA 5 cut(s) 413, 539, 1173, 1220, 1344
Tru9I TTAA 5 cut(s) 413, 539, 1173, 1220, 1344
TscAI CASTG 6 cut(s) 192, 443, 706, 835, 993, 1250
TseFI GTSAC 4 cut(s) 181, 192, 758, 830
TseI GCWGC 4 cut(s) 652, 745, 817, 864
Tsp45I GTSAC 4 cut(s) 181, 192, 758, 830
TspDTI ATGAA 4 cut(s) 141, 371, 608, 1178
TspGWI ACGGA 2 cut(s) 803, 866
TspRI CASTG 6 cut(s) 192, 443, 706, 835, 993, 1250
VpaK11BI GGWCC 2 cut(s) 479, 1284
XapI RAATTY 7 cut(s) 376, 517, 752, 824, 836, 1184, 1323
XceI RCATGY 2 cut(s) 554, 1359
XcmI CCANNNNNNNNNTGG 2 cut(s) 495, 1300
ZraI GACGTC 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.