Rorug02G0468300

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000145
Physical Location & Seq
Forward (+)
59922230 .. 59928450
6221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0468300.1

Sequence Viewer

Length: 2301 bp
ATGGCGTTAACGGCGAAGACGGCTCGGTCGAGAGGCACGCCGGTGAAGGAGAACGGCGTCAAGCTTGAGGAAGGCCTTAATGTGTTCAAGTCTGATAGGTTCGATGCTCAGGGCTACGTTCAGTCGCGCTGCTCCCTCAACGAGAAGGAGTTGAGACAGTTCTGCTCAAATCTCTTTGATTTAAAGAAGGCAGCTGCGGAGGAAATGCGTAGAAGTGTCTATGCTAATTATTCGGCATTCATACAAACTTCAAAAGAGATATCAGATTTGGAGGGGCAGCTTTCCTCTATCAGAAATCTGCTATCTACTCTTGCTACTGTAAATCATGATCTAGCTGAGGGGGTAAAGATTGATTTATCTAAATCAGTGGAAGGGTCTACTGAAAATGGTTCATTAACTTTTGAAGATAGAGAGCCTTCAGACTTGGAGAATTGGTTGGCAGAATTTCCTGATCTCTTGGATGTTTTGTTAGCTGAGAGGAGAGTGGATGAAGCTTTAGCTGCCCTGGAGGAAGGTGAACATGTGGCTTCTGAAGCAAAACAACTAAAGATGTTGGATCCAGCTCTACTCTTGTCTCTACAGAATGCTATTACTGAACGCAGGCAAAAGTTAGCTGATCAGCTTGCTGAGGCTGCTTGCCAGCCTTCGACTCGTGGTGGTGAACTCCGTTCATCTATATCTGCACTTAAGAAACTTGGGGATGGCCCTCGTGCACACAGTCTTCTTCTGAATGCACATTACCAGAGATATCAGTATAATATGCAAAGCCTTCGTCCATCAAGCACTTCATATGGAGGAGCATATACTGCTGCTCTCTCACAGTTAGTGTTCTCTGCTATTGCTCAAGCTGCCACTGATTCTGCCACTATATTTGAGAATGAACCAGATTATACTTCTGAGCTTGTTATGTGGGCCATAAAGCAAACCGAGGCTTTCGCTCTTCTCATTAAAAGACATGCGTTAGCTTCATCAGCAGCTGCTGGAGGCTTAAGAGCTGCTGCAGAGTGTGTTCAAATTGCATTAGGTCACTGTTCCTTGTTAGAAGCTCGTGGCTTGTCCCTTTGTCCTGTGCTTTTGAAACTTTTTAGGCCTAGTGTTGAGCAAGCATTAGAGGCTAACTTAAAACGAATTGAAGAAAGTACTGCTGCCTTAGCTGCTGCTGATGACTGGGTACTTACGACTGCTCCAACAGCGACACGTCAACCTGGCAGGCCTTCAAGTACATCCCTTGGTAATACAACAGCATTTCAACATAAACTTACAAGTAGTGCCCATCGGTTCAATTTGATGGTCCAGGATTTCTTTGAGGATGTTGGACCGTTGTTGAGTATGCAGTTGGGAGGTCAAACACTAGAAGGTTTGTTCCAAGTGTTTAACTCATACGTGAACATGCTCATAAAAGCATTACCAGGTTCAATGGATGAAGAAGCAAACTATGAAGGATCTGGGAATAAAATTGTTCGCATGGCTGGGAATGAAGCCCAACAGATGGCATTGCTGGCAAATGCATCATTATTAGCAGATGAACTACTTCCACGTGCAGCCATGAAGTTGGCTCCAATAATTAAGGTTGCATTCAAGGACGATCTTCGTAGAAGATCATCAGATAGGCAAAATCGCCATCCTGAGCAAAGAGAATGGAAGAAACGGCTTGTCAGCTCGGTTGATAGACTAAAAGATAGTTTTTGTCGTCAGCATGCTCTAGATCTCATTTTTACAGAGGAGGGTGATAGTCATCTTACTGCTGATATGTACATAAACCTGGATGGGAATGTGGATGAATTTGAGTGGTTTCCATCCTTAATATTCCAGGAACTTTTTGTAAAACTAAACAGGATGACCAGTATAGCCGCAGATATGTTTGTTGGCAGAGAGAGATTTACTACATTGCTATTTATGAGACTAACAGAAACTGTCATCCTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGTTCTATCTAGACATGAAGTTCGTCATATGCTTTGCTTCACAAGGTCGTTTCCTATCCCGAAATTTGCAACGCGTTATCAATGAGATCATATCTAAAGCAATGACAGCATTTTCTGCAACAGGCATGGATCCCTATAGTGAGCTCCCGGAAGATGAGTGGTTCGATGACATCTGCCATGAAGCAATGGAAAGATTGAGTGGAAAACCAAAGGCCATCAATGGAGATCGAGACCTTAACAGCCCAACGGCCTCGGTTTCAGCACAATCAATCTCATCAGTTAGATCTCATGGGAGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

766

Amino Acids

84.92

Weight (kDa)

5.24

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS51_Exo84_N PF08700 29 - 106 1e-13 Vps51/EXO84/COG1 N-terminal
Exo84_C PF16528 145 - 353 3.8e-20 Exocyst component 84 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 1489
AccI GTMKAC 1 cut(s) 377
AccII CGCG 2 cut(s) 127, 2073
AciI CCGC 2 cut(s) 197, 1851
AclWI GGATC 5 cut(s) 551, 564, 1450, 2123, 2136
AcsI RAATTY 3 cut(s) 443, 1781, 2062
AcuI CTGAAG 2 cut(s) 402, 552
AcvI CACGTG 1 cut(s) 1538
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 4 cut(s) 1141, 1173, 1222, 1754
AfiI CCNNNNNNNGG 1 cut(s) 1489
AflII CTTAAG 2 cut(s) 686, 988
AflIII ACRYGT 3 cut(s) 520, 1196, 2071
AjiI CACGTC 1 cut(s) 1199
AjnI CCWGG 6 cut(s) 504, 1204, 1293, 1408, 1761, 1809
AleI CACNNNNGTG 1 cut(s) 41
Alw21I GWGCWC 2 cut(s) 715, 2145
Alw26I GTCTC 4 cut(s) 148, 579, 1894, 2223
Alw44I GTGCAC 1 cut(s) 711
AlwI GGATC 5 cut(s) 551, 564, 1450, 2123, 2136
AlwNI CAGNNNCTG 3 cut(s) 977, 980, 1913
AoxI GGCC 9 cut(s) 73, 703, 912, 1088, 1211, 1967, 1973, 2211, 2247
ApaLI GTGCAC 1 cut(s) 711
ApoI RAATTY 3 cut(s) 443, 1781, 2062
ArsI GACNNNNNNTTYG 4 cut(s) 757, 789, 2003, 2035
Asp700I GAANNNNTTC 1 cut(s) 1530
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 6 cut(s) 704, 912, 1291, 1316, 1967, 1982
AsuC2I CCSGG 1 cut(s) 2147
AsuHPI GGTGA 4 cut(s) 55, 527, 671, 1739
AvaII GGWCC 3 cut(s) 1291, 1316, 1982
BaeGI GKGCMC 2 cut(s) 715, 1273
BamHI GGATCC 2 cut(s) 556, 2128
BanII GRGCYC 1 cut(s) 2145
BauI CACGAG 3 cut(s) 651, 708, 1047
BbrPI CACGTG 1 cut(s) 1538
BbsI GAAGAC 2 cut(s) 23, 713
Bbv12I GWGCWC 2 cut(s) 715, 2145
BbvCI CCTCAGC 2 cut(s) 336, 627
BceAI ACGGC 5 cut(s) 27, 36, 70, 1664, 2262
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 6 cut(s) 506, 1206, 1295, 1410, 1763, 1811
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 2147
BcoDI GTCTC 4 cut(s) 148, 579, 1894, 2223
BfaI CTAG 5 cut(s) 332, 1092, 1352, 1703, 2009
BfmI CTRYAG 3 cut(s) 578, 999, 2134
BfrI CTTAAG 2 cut(s) 686, 988
BglII AGATCT 2 cut(s) 1705, 2282
BmcAI AGTACT 1 cut(s) 1141
Bme1390I CCNGG 7 cut(s) 506, 1206, 1295, 1410, 1763, 1811, 2147
Bme18I GGWCC 3 cut(s) 1291, 1316, 1982
BmgBI CACGTC 1 cut(s) 1199
BmgT120I GGNCC 6 cut(s) 704, 912, 1291, 1316, 1967, 1982
BmiI GGNNCC 4 cut(s) 558, 1557, 1983, 2130
BmrFI CCNGG 7 cut(s) 506, 1206, 1295, 1410, 1763, 1811, 2147
BmrI ACTGGG 1 cut(s) 1177
BmsI GCATC 2 cut(s) 94, 1517
BmuI ACTGGG 1 cut(s) 1177
BpiI GAAGAC 2 cut(s) 23, 713
BpmI CTGGAG 2 cut(s) 527, 1002
Bpu10I CCTNAGC 5 cut(s) 108, 336, 627, 1150, 1626
BpuEI CTTGAG 2 cut(s) 86, 828
BpuMI CCSGG 1 cut(s) 2147
BsaAI YACGTR 2 cut(s) 1384, 1538
BsaBI GATNNNNATC 1 cut(s) 1734
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 2223
BsaJI CCNNGG 5 cut(s) 504, 927, 1228, 1970, 2250
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 1168, 1198
Bsc4I CCNNNNNNNGG 1 cut(s) 1489
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 1172, 1842
Bse3DI GCAATG 4 cut(s) 1493, 1886, 2106, 2190
Bse8I GATNNNNATC 1 cut(s) 1734
BseBI CCWGG 6 cut(s) 506, 1206, 1295, 1410, 1763, 1811
BseDI CCNNGG 5 cut(s) 504, 927, 1228, 1970, 2250
BseJI GATNNNNATC 1 cut(s) 1734
BseLI CCNNNNNNNGG 1 cut(s) 1489
BseMI GCAATG 4 cut(s) 1493, 1886, 2106, 2190
BseMII CTCAG 6 cut(s) 122, 327, 465, 618, 888, 1617
BseNI ACTGG 2 cut(s) 1172, 1842
BseRI GAGGAG 3 cut(s) 493, 810, 1736
BseSI GKGCMC 2 cut(s) 715, 1273
BseYI CCCAGC 1 cut(s) 1469
BsgI GTGCAG 2 cut(s) 666, 1560
Bsh1236I CGCG 2 cut(s) 127, 2073
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 9 cut(s) 75, 705, 914, 1090, 1213, 1969, 1975, 2213, 2249
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 715, 2145
BsiSI CCGG 2 cut(s) 41, 2147
BslFI GGGAC 1 cut(s) 1042
BslI CCNNNNNNNGG 1 cut(s) 1489
BsmAI GTCTC 4 cut(s) 148, 579, 1894, 2223
BsmFI GGGAC 1 cut(s) 1042
BsmI GAATGC 4 cut(s) 236, 589, 736, 1574
BsnI GGCC 9 cut(s) 75, 705, 914, 1090, 1213, 1969, 1975, 2213, 2249
Bso31I GGTCTC 1 cut(s) 2223
Bsp1286I GDGCHC 3 cut(s) 715, 1273, 2145
Bsp1407I TGTACA 1 cut(s) 1752
BspACI CCGC 2 cut(s) 197, 1851
BspANI GGCC 9 cut(s) 75, 705, 914, 1090, 1213, 1969, 1975, 2213, 2249
BspCNI CTCAG 6 cut(s) 121, 328, 466, 619, 889, 1618
BspFNI CGCG 2 cut(s) 127, 2073
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 4 cut(s) 558, 1557, 1983, 2130
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 5 cut(s) 551, 564, 1450, 2123, 2136
BspQI GCTCTTC 1 cut(s) 945
BspTI CTTAAG 2 cut(s) 686, 988
BspTNI GGTCTC 1 cut(s) 2223
BsrDI GCAATG 4 cut(s) 1493, 1886, 2106, 2190
BsrFI RCCGGY 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 1752
BsrI ACTGG 2 cut(s) 1172, 1842
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 5 cut(s) 504, 927, 1228, 1970, 2250
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 3 cut(s) 651, 708, 1047
BssT1I CCWWGG 2 cut(s) 1228, 1970
Bst2BI CACGAG 3 cut(s) 651, 708, 1047
Bst2UI CCWGG 6 cut(s) 506, 1206, 1295, 1410, 1763, 1811
Bst4CI ACNGT 8 cut(s) 159, 319, 719, 822, 1031, 1320, 1915, 2001
Bst6I CTCTTC 1 cut(s) 945
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 2 cut(s) 686, 988
BstAPI GCANNNNNTGC 2 cut(s) 806, 2114
BstAUI TGTACA 1 cut(s) 1752
BstBAI YACGTR 2 cut(s) 1384, 1538
BstC8I GCNNGC 9 cut(s) 38, 602, 624, 637, 641, 1104, 1211, 1500, 1698
BstDEI CTNAG 7 cut(s) 108, 336, 474, 627, 897, 1150, 1626
BstFNI CGCG 2 cut(s) 127, 2073
BstHHI GCGC 1 cut(s) 129
BstMAI GTCTC 4 cut(s) 148, 579, 1894, 2223
BstMCI CGRYCG 1 cut(s) 29
BstNI CCWGG 6 cut(s) 506, 1206, 1295, 1410, 1763, 1811
BstNSI RCATGY 4 cut(s) 524, 959, 1393, 1700
BstSCI CCNGG 7 cut(s) 504, 1204, 1293, 1408, 1761, 1809, 2145
BstSFI CTRYAG 3 cut(s) 578, 999, 2134
BstSLI GKGCMC 2 cut(s) 715, 1273
BstUI CGCG 2 cut(s) 127, 2073
BstV2I GAAGAC 2 cut(s) 23, 713
BstX2I RGATCY 5 cut(s) 556, 1442, 1705, 2128, 2282
BstXI CCANNNNNNTGG 1 cut(s) 1552
BstYI RGATCY 5 cut(s) 556, 1442, 1705, 2128, 2282
BsuRI GGCC 9 cut(s) 75, 705, 914, 1090, 1213, 1969, 1975, 2213, 2249
BtrI CACGTC 1 cut(s) 1199
BtsIMutI CAGTG 3 cut(s) 372, 852, 1027
Cac8I GCNNGC 9 cut(s) 38, 602, 624, 637, 641, 1104, 1211, 1500, 1698
CaiI CAGNNNCTG 3 cut(s) 977, 980, 1913
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 6 cut(s) 704, 912, 1291, 1316, 1967, 1982
CseI GACGC 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 1408
Csp6I GTAC 4 cut(s) 1140, 1172, 1221, 1753
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviQI GTAC 4 cut(s) 1140, 1172, 1221, 1753
DdeI CTNAG 7 cut(s) 108, 336, 474, 627, 897, 1150, 1626
DraI TTTAAA 1 cut(s) 183
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
Ecl136II GAGCTC 1 cut(s) 2143
Eco130I CCWWGG 2 cut(s) 1228, 1970
Eco147I AGGCCT 4 cut(s) 75, 1090, 1213, 1975
Eco24I GRGCYC 1 cut(s) 2145
Eco31I GGTCTC 1 cut(s) 2223
Eco32I GATATC 2 cut(s) 261, 749
Eco47I GGWCC 3 cut(s) 1291, 1316, 1982
Eco53kI GAGCTC 1 cut(s) 2143
Eco57I CTGAAG 2 cut(s) 402, 552
Eco72I CACGTG 1 cut(s) 1538
EcoICRI GAGCTC 1 cut(s) 2143
EcoO109I RGGNCCY 1 cut(s) 1982
EcoRII CCWGG 6 cut(s) 504, 1204, 1293, 1408, 1761, 1809
EcoRV GATATC 2 cut(s) 261, 749
EcoT14I CCWWGG 2 cut(s) 1228, 1970
EcoT22I ATGCAT 1 cut(s) 1510
EcoT38I GRGCYC 1 cut(s) 2145
ErhI CCWWGG 2 cut(s) 1228, 1970
FaqI GGGAC 1 cut(s) 1042
FauNDI CATATG 2 cut(s) 790, 2027
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 2145
FspBI CTAG 5 cut(s) 332, 1092, 1352, 1703, 2009
GlaI GCGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 1473
GsuI CTGGAG 2 cut(s) 527, 1002
HaeIII GGCC 9 cut(s) 75, 705, 914, 1090, 1213, 1969, 1975, 2213, 2249
HapII CCGG 2 cut(s) 41, 2147
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 9, 1202
HindII GTYRAC 2 cut(s) 9, 1202
HindIII AAGCTT 3 cut(s) 62, 492, 1942
HinfI GANTC 2 cut(s) 649, 857
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 2 cut(s) 41, 2147
HphI GGTGA 4 cut(s) 55, 527, 671, 1739
Hpy166II GTNNAC 7 cut(s) 9, 378, 518, 662, 713, 1202, 1387
Hpy188I TCNGA 9 cut(s) 94, 265, 293, 421, 532, 729, 898, 1606, 1933
Hpy188III TCNNGA 9 cut(s) 30, 326, 449, 1625, 1703, 2009, 2058, 2228, 2298
Hpy8I GTNNAC 7 cut(s) 9, 378, 518, 662, 713, 1202, 1387
HpyCH4III ACNGT 8 cut(s) 159, 319, 719, 822, 1031, 1320, 1915, 2001
HpyCH4IV ACGT 4 cut(s) 117, 1198, 1383, 1537
HpyF3I CTNAG 7 cut(s) 108, 336, 474, 627, 897, 1150, 1626
HpySE526I ACGT 4 cut(s) 117, 1198, 1383, 1537
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 616
KspAI GTTAAC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 5 cut(s) 137, 797, 1189, 1561, 2148
LweI GCATC 2 cut(s) 94, 1517
MabI ACCWGGT 1 cut(s) 1408
MaeI CTAG 5 cut(s) 332, 1092, 1352, 1703, 2009
MaeII ACGT 4 cut(s) 117, 1198, 1383, 1537
MaeIII GTNAC 1 cut(s) 1025
MflI RGATCY 5 cut(s) 556, 1442, 1705, 2128, 2282
MhlI GDGCHC 3 cut(s) 715, 1273, 2145
MluI ACGCGT 1 cut(s) 2071
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 3 cut(s) 534, 1211, 1294
Mph1103I ATGCAT 1 cut(s) 1510
MroXI GAANNNNTTC 1 cut(s) 1530
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 194, 977
MspCI CTTAAG 2 cut(s) 686, 988
MspI CCGG 2 cut(s) 41, 2147
MspR9I CCNGG 7 cut(s) 506, 1206, 1295, 1410, 1763, 1811, 2147
Mva1269I GAATGC 4 cut(s) 236, 589, 736, 1574
MvaI CCWGG 6 cut(s) 506, 1206, 1295, 1410, 1763, 1811
MvnI CGCG 2 cut(s) 127, 2073
NciI CCSGG 1 cut(s) 2147
NdeI CATATG 2 cut(s) 790, 2027
NlaIV GGNNCC 4 cut(s) 558, 1557, 1983, 2130
NmuCI GTSAC 1 cut(s) 1025
NsiI ATGCAT 1 cut(s) 1510
NspI RCATGY 4 cut(s) 524, 959, 1393, 1700
OliI CACNNNNGTG 1 cut(s) 41
PaeI GCATGC 1 cut(s) 1700
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 4 cut(s) 75, 1090, 1213, 1975
PciI ACATGT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 945
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 4 cut(s) 236, 589, 736, 1574
PdmI GAANNNNTTC 1 cut(s) 1530
PfeI GAWTC 1 cut(s) 857
PflMI CCANNNNNTGG 1 cut(s) 1489
PfoI TCCNGGA 3 cut(s) 1293, 1809, 2145
PleI GAGTC 1 cut(s) 643
PmaCI CACGTG 1 cut(s) 1538
PmlI CACGTG 1 cut(s) 1538
PpsI GAGTC 1 cut(s) 643
Ppu21I YACGTR 2 cut(s) 1384, 1538
PpuMI RGGWCCY 1 cut(s) 1982
PscI ACATGT 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 2145
Psp5II RGGWCCY 1 cut(s) 1982
Psp6I CCWGG 6 cut(s) 504, 1204, 1293, 1408, 1761, 1809
PspCI CACGTG 1 cut(s) 1538
PspFI CCCAGC 1 cut(s) 1469
PspGI CCWGG 6 cut(s) 504, 1204, 1293, 1408, 1761, 1809
PspN4I GGNNCC 4 cut(s) 558, 1557, 1983, 2130
PspPI GGNCC 6 cut(s) 704, 912, 1291, 1316, 1967, 1982
PspPPI RGGWCCY 1 cut(s) 1982
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 3 cut(s) 977, 980, 1913
PsuI RGATCY 5 cut(s) 556, 1442, 1705, 2128, 2282
PvuII CAGCTG 2 cut(s) 194, 977
RsaI GTAC 4 cut(s) 1141, 1173, 1222, 1754
RsaNI GTAC 4 cut(s) 1140, 1172, 1221, 1753
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 2145
SapI GCTCTTC 1 cut(s) 945
Sau96I GGNCC 6 cut(s) 704, 912, 1291, 1316, 1967, 1982
ScaI AGTACT 1 cut(s) 1141
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 7 cut(s) 506, 1206, 1295, 1410, 1763, 1811, 2147
SduI GDGCHC 3 cut(s) 715, 1273, 2145
SexAI ACCWGGT 1 cut(s) 1408
SfaNI GCATC 2 cut(s) 94, 1517
SfcI CTRYAG 3 cut(s) 578, 999, 2134
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 3 cut(s) 1291, 1316, 1982
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 4 cut(s) 65, 686, 843, 988
SmoI CTYRAG 4 cut(s) 65, 686, 843, 988
SphI GCATGC 1 cut(s) 1700
SseBI AGGCCT 4 cut(s) 75, 1090, 1213, 1975
SsiI CCGC 2 cut(s) 197, 1851
SspI AATATT 1 cut(s) 1806
SspMI CTAG 5 cut(s) 332, 1092, 1352, 1703, 2009
SstI GAGCTC 1 cut(s) 2145
StuI AGGCCT 4 cut(s) 75, 1090, 1213, 1975
StyD4I CCNGG 7 cut(s) 504, 1204, 1293, 1408, 1761, 1809, 2145
StyI CCWWGG 2 cut(s) 1228, 1970
TaaI ACNGT 8 cut(s) 159, 319, 719, 822, 1031, 1320, 1915, 2001
TaiI ACGT 4 cut(s) 120, 1201, 1386, 1540
TaqI TCGA 5 cut(s) 29, 102, 647, 2163, 2227
TaqII GACCGA 1 cut(s) 15
TatI WGTACW 3 cut(s) 1139, 1220, 1752
TauI GCSGC 1 cut(s) 1853
TfiI GAWTC 1 cut(s) 857
TscAI CASTG 3 cut(s) 372, 859, 1034
TseFI GTSAC 1 cut(s) 1025
Tsp45I GTSAC 1 cut(s) 1025
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 372, 859, 1034
Van91I CCANNNNNTGG 1 cut(s) 1489
Vha464I CTTAAG 2 cut(s) 686, 988
VneI GTGCAC 1 cut(s) 711
VpaK11BI GGWCC 3 cut(s) 1291, 1316, 1982
XapI RAATTY 3 cut(s) 443, 1781, 2062
XbaI TCTAGA 2 cut(s) 1702, 2008
XceI RCATGY 4 cut(s) 524, 959, 1393, 1700
XmiI GTMKAC 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 1530
XspI CTAG 5 cut(s) 332, 1092, 1352, 1703, 2009
ZrmI AGTACT 1 cut(s) 1141
Zsp2I ATGCAT 1 cut(s) 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.