FvH4_2g08143

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000145
Physical Location & Seq
Forward (+)
7074614 .. 7075887
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08143.t1

Sequence Viewer

Length: 351 bp
ATGACCCAACTCTCGTCACCTCCACTTTTAGGCTCCACATATGTCTTACCAACACCCATGGTTCCCTCTCGGTGGCGCGAAGCTGAGGCAGGGCTTTCAAGAGTTAAAGCCTCAGCAACATTTTTCCTCAAATTAAGGTTTCACTGGGGTGAGCGCATACTCATTGTTTCGACAACCTCAAGCACTAAGGATCCAGATATGATTTACAAGGCTAAGCGTCTCCTCGAACTTTTGGCCACAACTAATGTGTCTCCACGCATGGTAGTAGACATAATGAATGGCTATAGAAAACTGTATGACCTCAAGATTGGGAATCAAGAAGGTGGAATTTGCGCCAAGTTTAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

9.94

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 78
AclWI GGATC 2 cut(s) 185, 198
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 29, 72
AgsI TTSAA 1 cut(s) 99
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 224, 255
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 3 cut(s) 78, 156, 335
AsuHPI GGTGA 2 cut(s) 9, 161
BalI TGGCCA 1 cut(s) 236
BamHI GGATCC 1 cut(s) 190
BbvCI CCTCAGC 2 cut(s) 84, 112
BcoDI GTCTC 2 cut(s) 224, 255
BfaI CTAG 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 283
BglII AGATCT 1 cut(s) 345
BlpI GCTNAGC 1 cut(s) 213
BmiI GGNNCC 3 cut(s) 34, 63, 192
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
Bpu10I CCTNAGC 2 cut(s) 84, 112
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 163, 287
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 72
Bse1I ACTGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 29, 72
BseMII CTCAG 2 cut(s) 75, 126
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 29, 72
BsmAI GTCTC 2 cut(s) 224, 255
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 190, 345
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 57
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 76, 125
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 34, 63, 192
BspPI GGATC 2 cut(s) 185, 198
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 190, 345
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 294
BstDEI CTNAG 4 cut(s) 84, 112, 186, 213
BstDSI CCRYGG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 3 cut(s) 78, 156, 335
BstKTI GATC 2 cut(s) 193, 348
BstMAI GTCTC 2 cut(s) 224, 255
BstMBI GATC 2 cut(s) 190, 345
BstSFI CTRYAG 1 cut(s) 283
BstUI CGCG 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 190, 345
BstYI RGATCY 2 cut(s) 190, 345
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 142
CfoI GCGC 3 cut(s) 78, 156, 335
CseI GACGC 1 cut(s) 206
CviAII CATG 2 cut(s) 58, 259
CviJI RGCY 7 cut(s) 33, 83, 94, 110, 212, 236, 282
CviKI_1 RGCY 7 cut(s) 33, 83, 94, 110, 212, 236, 282
DdeI CTNAG 4 cut(s) 84, 112, 186, 213
DpnI GATC 2 cut(s) 192, 347
DpnII GATC 2 cut(s) 190, 345
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 61, 262
FaiI YATR 9 cut(s) 40, 42, 59, 158, 200, 260, 272, 285, 297
FatI CATG 2 cut(s) 57, 258
FauNDI CATATG 1 cut(s) 40
FblI GTMKAC 1 cut(s) 267
FspBI CTAG 1 cut(s) 349
GlaI GCGC 3 cut(s) 77, 155, 334
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 1 cut(s) 206
HhaI GCGC 3 cut(s) 78, 156, 335
Hin1II CATG 2 cut(s) 61, 262
Hin6I GCGC 3 cut(s) 76, 154, 333
HinP1I GCGC 3 cut(s) 76, 154, 333
HinfI GANTC 1 cut(s) 313
HphI GGTGA 2 cut(s) 9, 161
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 4 cut(s) 99, 194, 304, 317
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 294
HpyF3I CTNAG 4 cut(s) 84, 112, 186, 213
Hsp92II CATG 2 cut(s) 61, 262
HspAI GCGC 3 cut(s) 76, 154, 333
Kzo9I GATC 2 cut(s) 190, 345
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 75, 130, 207
MaeI CTAG 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 15
MalI GATC 2 cut(s) 192, 347
MboI GATC 2 cut(s) 190, 345
MflI RGATCY 2 cut(s) 190, 345
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 131, 327
MluNI TGGCCA 1 cut(s) 236
MnlI CCTC 8 cut(s) 30, 76, 79, 121, 137, 187, 233, 311
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 3 cut(s) 105, 134, 342
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 236
MvnI CGCG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 40
NdeII GATC 2 cut(s) 190, 345
NlaIII CATG 2 cut(s) 61, 262
NlaIV GGNNCC 3 cut(s) 34, 63, 192
NmuCI GTSAC 1 cut(s) 15
OliI CACNNNNGTG 1 cut(s) 147
PfeI GAWTC 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 34, 63, 192
PsuI RGATCY 2 cut(s) 190, 345
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 105, 134, 342
Sau3AI GATC 2 cut(s) 190, 345
SetI ASST 6 cut(s) 22, 85, 140, 179, 303, 325
SfcI CTRYAG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 178, 302
SmoI CTYRAG 2 cut(s) 178, 302
Sse9I AATT 2 cut(s) 131, 327
SspMI CTAG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 170, 225
TasI AATT 2 cut(s) 131, 327
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 3 cut(s) 105, 134, 342
Tru9I TTAA 3 cut(s) 105, 134, 342
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 149
XapI RAATTY 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.