RLG00000021085

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000145
Physical Location & Seq
Reverse (-)
71788234 .. 71795058
6825 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021085

Sequence Viewer

Length: 2232 bp
ATGGTGGAGGAGAGCGATTCCGGCGTCCTCGAGCAGCCAAAAATCGATCACGTCGTTGCCGGCCCTATCCCGATAATGGAGAAGATCCGAAAGATGATGGAGAAGAGCGATTTCGGCGTCATTGATATGGTTGTTGGGGAGCCTGCCCGCGCGGCTACCCGCGGGCCTATCCCGATGTCGAACAGCAGGTCTTTCCGTCCGATCTGCAATCAAAACCGAGCAAAGTTGGCAGAAGCTTGGCCGATGGTCAAATCGTCCTTGGAAGAACTCGGGTATTCATGCACAATGAGTACGGTTGATTCCACAGTCGTAGTGGTATCACCCTGGTCTACAGCCCCAGATATGCGCAAGGCTGTTTATCTTTTCAAGCTTTTGTTCAAGACTCCTGTTCCGGCACCTCTGAAGAGCACTCTTACTGCGGTGGGTCCATCTCCAAGATTACACTGGGTCAGGAAGGTTTTGAAATTCTGCACTATTGAGAAGTTGAGTCCTGCACATGTTATTAGGGTTTTCAACCGGAAGCTGAAACAAAAAACAGCGATGATGAAGAACAGCGATACGGTGATGATGGAGAAAAGCGATTTCGGCATCCCTGAGCAGCCAAAATTCAATCAGGAAGTTGGTGACCCAGTTCCGATGTTGAACAGCAGCGGGTCTTTCCGTCCGATCTCCAACACAAATCGAGCAAAGTTGACAGAAGCTTGGCCGATGGTCAAATTGTCCTTGGAAGAACTCGGGTATTCATGCGCAATGAGTACGGTTGATTCAACAGTCTTAGTGGTACCACCCTGTTCTACAGATCCAGATATCATGCGCAAGGCTAATTATCTTTTCCAGCTTTTATTCAAGACTCCTGTTCCGGCACCTCTGGCTATAGAGTTGGCGCAAAGCGTAGGTAAACAGGAATTAGTTGATCTGGGTAGTTGTACTGGGATTATGAACCATAGTTTAGGTGAGAAATTTGATAAACTGTGGATACGTCTCAAACGCTCCTTAAAGGAACTTGGTGATCTGACCCATTGTACTCTATTTTTGAACAAGAGCACTCTGACTGCCGTGGGTCCATCTCCAAGATTATGCTGGGTCAGGAAGGTTTTGAAAATTTGCATTACTGAAGAGTTGAGCCCTGCACATGTTATTAGGGTTTTCAACCGGAAGAAGAAACGAACAACAACGATGATGAAGAGCAGCGATACAATGATGATGGAGAAGAGTGATTCCGGCGTCCTTGAGCAGCCAAAATTCAGTCAGGAAGTTAGAGCGCCTGTTCCGTTGTTGAACAGCAGGTCTTTCTGTCCGATCTCCAATGAAAACCAAGCAAAGTTGAGAGAAGCTTGGCCAATGGTCAAATCGTCCTTAGAAGAACTTGGGTATTTATGTGCAATGAGTACGGTTGACTCCACAGTCTCACTGGTATTACCCTGGCCTACAGACCCAGGTATCATGCACAAGGCTGATTATCTTTTCAAACTTTTGTTGAAGACTCCTGTTCCGGCACCGCTGGTAAGCATGGCTGACCCCTTAAAAAAGAGAGAGGAGAAAATAAGAAGCATAAACAAAATTGAATTAGTTAATCTGGGTAATTGTACTGGGAATATGAACCATAGTTTAGGTAAAAACACTCTTACTGCTGTGGGTCCATCTCCAAGATTACACTTGGTCAGGAGGGTTTTGGAAATCTGTATAAAACGAAAGATAAGTCCTGCAGATGTTATTAGCACGTTGATATGCAAGTATGATCAAAAAATTTCATTTGTTCGGGATCTTGATGTCTCTAATGTCAAGAAGACTGGCCATTTGGTGAACAAAGATGGTGCAGCTGAAGTGACATTGCCCTTTCTTGAAAGACGAGGTATGTTCATTAAGCGTACCGTGACTATCTCAACAACTGGAGCGACCAAAGAGTACCCGGATGCTTTTGAGAAAGCTAGGCATCTTTTGCAACTTTTGACAACAACTAATGTCCCGCCATCTCGGGAACAATATGTTAAACGGCGTAAATGGCTCATTCGTTCTGCGAAGCGGATTCGAGAATTCACGGAGTGTGATATCTACTGCACAGGAGACACTATTACTGGTGTGAGTCCCTCTCTTGTGGGATTGAGTATGTTCAGGAGGATTGTGTTGACCTGCATTGTTGAAGATACGGATCCTGGACATCGTATAAGGAAATTTTTACGCTCAGAGTCGAAAAGGAAACTGAAGAAGATTATCAAGCGTTTGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

744

Amino Acids

83.42

Weight (kDa)

9.7

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1403
Acc16I TGCGCA 3 cut(s) 347, 748, 815
Acc36I ACCTGC 3 cut(s) 177, 1275, 2138
Acc65I GGTACC 1 cut(s) 781
AccB1I GGYRCC 4 cut(s) 394, 781, 862, 1495
AccI GTMKAC 1 cut(s) 329
AccII CGCG 3 cut(s) 150, 152, 162
AciI CCGC 9 cut(s) 148, 152, 160, 162, 419, 651, 1499, 1967, 2023
AclWI GGATC 5 cut(s) 79, 794, 1770, 2144, 2157
AcoI YGGCCR 4 cut(s) 239, 704, 1337, 1792
AcsI RAATTY 8 cut(s) 464, 605, 959, 1101, 1241, 1746, 2033, 2171
AcuI CTGAAG 4 cut(s) 422, 1134, 1842, 2222
AcyI GRCGYC 3 cut(s) 24, 117, 1224
AdeI CACNNNGTG 1 cut(s) 2043
AfaI GTAC 9 cut(s) 292, 757, 783, 928, 1024, 1390, 1588, 1870, 1907
AfiI CCNNNNNNNGG 1 cut(s) 76
AflIII ACRYGT 2 cut(s) 496, 1132
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 4 cut(s) 323, 1421, 1435, 2152
AluBI AGCT 8 cut(s) 236, 370, 523, 701, 838, 1334, 1820, 1928
AluI AGCT 8 cut(s) 236, 370, 523, 701, 838, 1334, 1820, 1928
Alw21I GWGCWC 2 cut(s) 410, 1046
Alw26I GTCTC 4 cut(s) 986, 1411, 1777, 2058
AlwI GGATC 5 cut(s) 79, 794, 1770, 2144, 2157
Ama87I CYCGRG 4 cut(s) 29, 269, 734, 1974
AoxI GGCC 7 cut(s) 61, 164, 239, 704, 1337, 1424, 1792
ApeKI GCWGC 6 cut(s) 34, 598, 648, 1188, 1234, 1817
ApoI RAATTY 8 cut(s) 464, 605, 959, 1101, 1241, 1746, 2033, 2171
ArsI GACNNNNNNTTYG 6 cut(s) 173, 205, 1684, 1716, 1780, 1812
Asp718I GGTACC 1 cut(s) 781
AspLEI GCGC 6 cut(s) 152, 348, 749, 816, 886, 1264
AspS9I GGNCC 5 cut(s) 62, 164, 425, 1061, 1637
AsuC2I CCSGG 1 cut(s) 1910
AsuHPI GGTGA 6 cut(s) 312, 574, 635, 965, 1019, 1813
AvaI CYCGRG 4 cut(s) 29, 269, 734, 1974
AvaII GGWCC 3 cut(s) 425, 1061, 1637
BaeI ACNNNNGTAYC 2 cut(s) 1423, 1456
BalI TGGCCA 2 cut(s) 1339, 1794
BamHI GGATCC 1 cut(s) 2149
BanI GGYRCC 4 cut(s) 394, 781, 862, 1495
BanII GRGCYC 1 cut(s) 1127
BbsI GAAGAC 2 cut(s) 1487, 1793
Bbv12I GWGCWC 2 cut(s) 410, 1046
BbvI GCAGC 6 cut(s) 46, 610, 660, 1200, 1246, 1829
BceAI ACGGC 2 cut(s) 1040, 2009
BciT130I CCWGG 4 cut(s) 325, 1423, 1437, 2154
BciVI GTATCC 1 cut(s) 969
BclI TGATCA 1 cut(s) 1738
BcnI CCSGG 1 cut(s) 1910
BcoDI GTCTC 4 cut(s) 986, 1411, 1777, 2058
BfaI CTAG 1 cut(s) 1929
BfmI CTRYAG 5 cut(s) 330, 795, 873, 1428, 1704
BfoI RGCGCY 1 cut(s) 1265
BfuAI ACCTGC 3 cut(s) 177, 1275, 2138
BfuI GTATCC 1 cut(s) 969
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 7 cut(s) 35, 153, 599, 649, 1189, 1235, 1818
BlsI GCNGC 7 cut(s) 36, 154, 600, 650, 1190, 1236, 1819
Bme1390I CCNGG 5 cut(s) 325, 1423, 1437, 1910, 2154
Bme18I GGWCC 3 cut(s) 425, 1061, 1637
BmeT110I CYCGRG 4 cut(s) 29, 269, 734, 1974
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 5 cut(s) 62, 164, 425, 1061, 1637
BmiI GGNNCC 9 cut(s) 141, 396, 426, 783, 864, 1062, 1497, 1638, 2151
BmrFI CCNGG 5 cut(s) 325, 1423, 1437, 1910, 2154
BmrI ACTGGG 4 cut(s) 454, 623, 939, 1599
BmsI GCATC 3 cut(s) 597, 1903, 1942
BmuI ACTGGG 4 cut(s) 454, 623, 939, 1599
BpiI GAAGAC 2 cut(s) 1487, 1793
BplI GAGNNNNNCTC 2 cut(s) 2074, 2106
BpmI CTGGAG 1 cut(s) 1911
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 1250
BpuMI CCSGG 1 cut(s) 1910
Bsa29I ATCGAT 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 2148
BsaHI GRCGYC 3 cut(s) 24, 117, 1224
BsaJI CCNNGG 7 cut(s) 160, 258, 323, 723, 1056, 1421, 1435
BsaWI WCCGGW 2 cut(s) 516, 1152
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 8 cut(s) 449, 629, 934, 1416, 1594, 1795, 1894, 2080
Bse3DI GCAATG 3 cut(s) 756, 1389, 1829
Bse8I GATNNNNATC 1 cut(s) 2148
BseBI CCWGG 4 cut(s) 325, 1423, 1437, 2154
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 7 cut(s) 160, 258, 323, 723, 1056, 1421, 1435
BseGI GGATG 2 cut(s) 588, 1918
BseJI GATNNNNATC 1 cut(s) 2148
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 3 cut(s) 756, 1389, 1829
BseMII CTCAG 2 cut(s) 585, 2196
BseNI ACTGG 8 cut(s) 449, 629, 934, 1416, 1594, 1795, 1894, 2080
BseRI GAGGAG 2 cut(s) 23, 1550
BseXI GCAGC 6 cut(s) 46, 610, 660, 1200, 1246, 1829
BseYI CCCAGC 1 cut(s) 1080
BsgI GTGCAG 5 cut(s) 454, 477, 1113, 1836, 2041
Bsh1236I CGCG 3 cut(s) 150, 152, 162
BshFI GGCC 7 cut(s) 63, 166, 241, 706, 1339, 1426, 1794
BshNI GGYRCC 4 cut(s) 394, 781, 862, 1495
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 410, 1046
BsiHKCI CYCGRG 4 cut(s) 29, 269, 734, 1974
BsiSI CCGG 9 cut(s) 21, 60, 392, 517, 860, 1153, 1221, 1493, 1910
BslFI GGGAC 2 cut(s) 1949, 2070
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 4 cut(s) 986, 1411, 1777, 2058
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 2 cut(s) 1949, 2070
BsnI GGCC 7 cut(s) 63, 166, 241, 706, 1339, 1426, 1794
BsoBI CYCGRG 4 cut(s) 29, 269, 734, 1974
Bsp1286I GDGCHC 3 cut(s) 410, 1046, 1127
BspACI CCGC 9 cut(s) 148, 152, 160, 162, 419, 651, 1499, 1967, 2023
BspANI GGCC 7 cut(s) 63, 166, 241, 706, 1339, 1426, 1794
BspCNI CTCAG 2 cut(s) 586, 2195
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 3 cut(s) 150, 152, 162
BspLI GGNNCC 9 cut(s) 141, 396, 426, 783, 864, 1062, 1497, 1638, 2151
BspMAI CTGCAG 1 cut(s) 1708
BspMI ACCTGC 3 cut(s) 177, 1275, 2138
BspPI GGATC 5 cut(s) 79, 794, 1770, 2144, 2157
BspQI GCTCTTC 3 cut(s) 98, 398, 1178
BspT107I GGYRCC 4 cut(s) 394, 781, 862, 1495
BsrDI GCAATG 3 cut(s) 756, 1389, 1829
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 8 cut(s) 449, 629, 934, 1416, 1594, 1795, 1894, 2080
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 7 cut(s) 160, 258, 323, 723, 1056, 1421, 1435
BssNI GRCGYC 3 cut(s) 24, 117, 1224
BssT1I CCWWGG 2 cut(s) 258, 723
Bst2UI CCWGG 4 cut(s) 325, 1423, 1437, 2154
Bst4CI ACNGT 9 cut(s) 295, 307, 562, 760, 772, 972, 1393, 1405, 1873
Bst6I CTCTTC 5 cut(s) 98, 398, 1110, 1178, 1205
BstACI GRCGYC 3 cut(s) 24, 117, 1224
BstAPI GCANNNNNTGC 1 cut(s) 1939
BstC8I GCNNGC 4 cut(s) 61, 144, 148, 164
BstDEI CTNAG 4 cut(s) 594, 775, 1357, 2182
BstDSI CCRYGG 2 cut(s) 160, 1056
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 2 cut(s) 588, 1918
BstFNI CGCG 3 cut(s) 150, 152, 162
BstH2I RGCGCY 1 cut(s) 1265
BstHHI GCGC 6 cut(s) 152, 348, 749, 816, 886, 1264
BstMAI GTCTC 4 cut(s) 986, 1411, 1777, 2058
BstMWI GCNNNNNNNGC 8 cut(s) 21, 114, 152, 227, 585, 869, 1939, 2002
BstNI CCWGG 4 cut(s) 325, 1423, 1437, 2154
BstNSI RCATGY 2 cut(s) 500, 1136
BstPI GGTNACC 1 cut(s) 623
BstSCI CCNGG 5 cut(s) 323, 1421, 1435, 1908, 2152
BstSFI CTRYAG 5 cut(s) 330, 795, 873, 1428, 1704
BstUI CGCG 3 cut(s) 150, 152, 162
BstV1I GCAGC 6 cut(s) 46, 610, 660, 1200, 1246, 1829
BstV2I GAAGAC 2 cut(s) 1487, 1793
BstX2I RGATCY 4 cut(s) 84, 799, 1762, 2149
BstYI RGATCY 4 cut(s) 84, 799, 1762, 2149
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 7 cut(s) 63, 166, 241, 706, 1339, 1426, 1794
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 160, 1056
BtgZI GCGATG 1 cut(s) 554
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 588, 1918
BtsIMutI CAGTG 2 cut(s) 442, 1409
BveI ACCTGC 3 cut(s) 177, 1275, 2138
Cac8I GCNNGC 4 cut(s) 61, 144, 148, 164
CfoI GCGC 6 cut(s) 152, 348, 749, 816, 886, 1264
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 5 cut(s) 62, 164, 425, 1061, 1637
Cfr42I CCGCGG 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 3 cut(s) 13, 106, 1213
Csp6I GTAC 9 cut(s) 291, 756, 782, 927, 1023, 1389, 1587, 1869, 1906
CviAII CATG 7 cut(s) 279, 497, 744, 811, 1133, 1444, 1510
CviQI GTAC 9 cut(s) 291, 756, 782, 927, 1023, 1389, 1587, 1869, 1906
DdeI CTNAG 4 cut(s) 594, 775, 1357, 2182
DraIII CACNNNGTG 1 cut(s) 2043
DrdI GACNNNNNNGTC 1 cut(s) 1403
DseDI GACNNNNNNGTC 1 cut(s) 1403
EaeI YGGCCR 4 cut(s) 239, 704, 1337, 1792
Eam1104I CTCTTC 5 cut(s) 98, 398, 1110, 1178, 1205
EarI CTCTTC 5 cut(s) 98, 398, 1110, 1178, 1205
Eco130I CCWWGG 2 cut(s) 258, 723
Eco24I GRGCYC 1 cut(s) 1127
Eco32I GATATC 2 cut(s) 808, 2050
Eco47I GGWCC 3 cut(s) 425, 1061, 1637
Eco57I CTGAAG 4 cut(s) 422, 1134, 1842, 2222
Eco88I CYCGRG 4 cut(s) 29, 269, 734, 1974
Eco91I GGTNACC 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 2033
EcoRII CCWGG 4 cut(s) 323, 1421, 1435, 2152
EcoRV GATATC 2 cut(s) 808, 2050
EcoT14I CCWWGG 2 cut(s) 258, 723
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 2 cut(s) 258, 723
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 7 cut(s) 282, 500, 747, 814, 1136, 1447, 1513
FaqI GGGAC 2 cut(s) 1949, 2070
FatI CATG 7 cut(s) 278, 496, 743, 810, 1132, 1443, 1509
FauI CCCGC 5 cut(s) 155, 155, 167, 644, 1974
FbaI TGATCA 1 cut(s) 1738
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 7 cut(s) 35, 153, 599, 649, 1189, 1235, 1818
FokI GGATG 2 cut(s) 575, 1925
FriOI GRGCYC 1 cut(s) 1127
Fsp4HI GCNGC 7 cut(s) 35, 153, 599, 649, 1189, 1235, 1818
FspBI CTAG 1 cut(s) 1929
FspI TGCGCA 3 cut(s) 347, 748, 815
GlaI GCGC 6 cut(s) 151, 347, 748, 815, 885, 1263
GluI GCNGC 7 cut(s) 35, 153, 599, 649, 1189, 1235, 1818
GsaI CCCAGC 1 cut(s) 1084
GsuI CTGGAG 1 cut(s) 1911
HaeII RGCGCY 1 cut(s) 1265
HaeIII GGCC 7 cut(s) 63, 166, 241, 706, 1339, 1426, 1794
HapII CCGG 9 cut(s) 21, 60, 392, 517, 860, 1153, 1221, 1493, 1910
HgaI GACGC 3 cut(s) 13, 106, 1213
HhaI GCGC 6 cut(s) 152, 348, 749, 816, 886, 1264
Hin1I GRCGYC 3 cut(s) 24, 117, 1224
Hin1II CATG 7 cut(s) 282, 500, 747, 814, 1136, 1447, 1513
Hin6I GCGC 6 cut(s) 150, 346, 747, 814, 884, 1262
HinP1I GCGC 6 cut(s) 150, 346, 747, 814, 884, 1262
HincII GTYRAC 3 cut(s) 693, 1396, 2127
HindII GTYRAC 3 cut(s) 693, 1396, 2127
HindIII AAGCTT 4 cut(s) 234, 368, 699, 1332
HpaII CCGG 9 cut(s) 21, 60, 392, 517, 860, 1153, 1221, 1493, 1910
HphI GGTGA 6 cut(s) 312, 574, 635, 965, 1019, 1813
Hpy166II GTNNAC 6 cut(s) 330, 693, 899, 1396, 1804, 2127
Hpy8I GTNNAC 6 cut(s) 330, 693, 899, 1396, 1804, 2127
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 448, 1084
HpyCH4III ACNGT 9 cut(s) 295, 307, 562, 760, 772, 972, 1393, 1405, 1873
HpyCH4IV ACGT 3 cut(s) 51, 979, 1721
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 114, 152, 227, 585, 869, 1939, 2002
HpyF3I CTNAG 4 cut(s) 594, 775, 1357, 2182
HpySE526I ACGT 3 cut(s) 51, 979, 1721
Hsp92I GRCGYC 3 cut(s) 24, 117, 1224
Hsp92II CATG 7 cut(s) 282, 500, 747, 814, 1136, 1447, 1513
HspAI GCGC 6 cut(s) 150, 346, 747, 814, 884, 1262
KpnI GGTACC 1 cut(s) 785
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 1738
KspI CCGCGG 1 cut(s) 163
LguI GCTCTTC 3 cut(s) 98, 398, 1178
LmnI GCTCC 3 cut(s) 139, 995, 1892
Lsp1109I GCAGC 6 cut(s) 46, 610, 660, 1200, 1246, 1829
LweI GCATC 3 cut(s) 597, 1903, 1942
MaeI CTAG 1 cut(s) 1929
MaeII ACGT 3 cut(s) 51, 979, 1721
MaeIII GTNAC 3 cut(s) 623, 1825, 1873
MflI RGATCY 4 cut(s) 84, 799, 1762, 2149
MhlI GDGCHC 3 cut(s) 410, 1046, 1127
MlsI TGGCCA 2 cut(s) 1339, 1794
MluNI TGGCCA 2 cut(s) 1339, 1794
MlyI GAGTC 7 cut(s) 376, 496, 844, 1391, 1477, 2092, 2195
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 8 cut(s) 38, 408, 876, 1528, 1659, 1844, 2098, 2109
Mox20I TGGCCA 2 cut(s) 1339, 1794
MroNI GCCGGC 1 cut(s) 59
MscI TGGCCA 2 cut(s) 1339, 1794
MseI TTAA 5 cut(s) 995, 1523, 1572, 1863, 1989
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 2 cut(s) 1339, 1794
MspA1I CMGCKG 4 cut(s) 162, 651, 1501, 1820
MspI CCGG 9 cut(s) 21, 60, 392, 517, 860, 1153, 1221, 1493, 1910
MspR9I CCNGG 5 cut(s) 325, 1423, 1437, 1910, 2154
MvaI CCWGG 4 cut(s) 325, 1423, 1437, 2154
MvnI CGCG 3 cut(s) 150, 152, 162
MwoI GCNNNNNNNGC 8 cut(s) 21, 114, 152, 227, 585, 869, 1939, 2002
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 1 cut(s) 1910
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 282, 500, 747, 814, 1136, 1447, 1513
NlaIV GGNNCC 9 cut(s) 141, 396, 426, 783, 864, 1062, 1497, 1638, 2151
NmuCI GTSAC 3 cut(s) 623, 1825, 1873
NsbI TGCGCA 3 cut(s) 347, 748, 815
NspI RCATGY 2 cut(s) 500, 1136
PaeR7I CTCGAG 1 cut(s) 29
PciI ACATGT 2 cut(s) 496, 1132
PciSI GCTCTTC 3 cut(s) 98, 398, 1178
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 5 cut(s) 17, 299, 764, 1217, 2026
PfoI TCCNGGA 1 cut(s) 2152
PkrI GCNGC 7 cut(s) 36, 154, 600, 650, 1190, 1236, 1819
PleI GAGTC 7 cut(s) 376, 495, 844, 1391, 1477, 2091, 2194
PpsI GAGTC 7 cut(s) 376, 495, 844, 1391, 1477, 2091, 2194
PscI ACATGT 2 cut(s) 496, 1132
Psp6I CCWGG 4 cut(s) 323, 1421, 1435, 2152
PspEI GGTNACC 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 1080
PspGI CCWGG 4 cut(s) 323, 1421, 1435, 2152
PspN4I GGNNCC 9 cut(s) 141, 396, 426, 783, 864, 1062, 1497, 1638, 2151
PspPI GGNCC 5 cut(s) 62, 164, 425, 1061, 1637
PspXI VCTCGAGB 1 cut(s) 29
PstI CTGCAG 1 cut(s) 1708
PsuI RGATCY 4 cut(s) 84, 799, 1762, 2149
PvuII CAGCTG 1 cut(s) 1820
RsaI GTAC 9 cut(s) 292, 757, 783, 928, 1024, 1390, 1588, 1870, 1907
RsaNI GTAC 9 cut(s) 291, 756, 782, 927, 1023, 1389, 1587, 1869, 1906
RseI CAYNNNNRTG 1 cut(s) 125
SacII CCGCGG 1 cut(s) 163
SapI GCTCTTC 3 cut(s) 98, 398, 1178
SaqAI TTAA 5 cut(s) 995, 1523, 1572, 1863, 1989
SatI GCNGC 7 cut(s) 35, 153, 599, 649, 1189, 1235, 1818
Sau96I GGNCC 5 cut(s) 62, 164, 425, 1061, 1637
SchI GAGTC 7 cut(s) 376, 496, 844, 1391, 1477, 2092, 2195
ScrFI CCNGG 5 cut(s) 325, 1423, 1437, 1910, 2154
SduI GDGCHC 3 cut(s) 410, 1046, 1127
SfaNI GCATC 3 cut(s) 597, 1903, 1942
SfcI CTRYAG 5 cut(s) 330, 795, 873, 1428, 1704
Sfr274I CTCGAG 1 cut(s) 29
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SinI GGWCC 3 cut(s) 425, 1061, 1637
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 29, 1229
SmoI CTYRAG 2 cut(s) 29, 1229
SsiI CCGC 9 cut(s) 148, 152, 160, 162, 419, 651, 1499, 1967, 2023
SspMI CTAG 1 cut(s) 1929
StyD4I CCNGG 5 cut(s) 323, 1421, 1435, 1908, 2152
StyI CCWWGG 2 cut(s) 258, 723
TaaI ACNGT 9 cut(s) 295, 307, 562, 760, 772, 972, 1393, 1405, 1873
TaiI ACGT 3 cut(s) 54, 982, 1724
TaqI TCGA 6 cut(s) 30, 45, 179, 682, 2029, 2189
TatI WGTACW 3 cut(s) 926, 1022, 1586
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 17, 299, 764, 1217, 2026
Tru1I TTAA 5 cut(s) 995, 1523, 1572, 1863, 1989
Tru9I TTAA 5 cut(s) 995, 1523, 1572, 1863, 1989
TscAI CASTG 2 cut(s) 449, 1416
TseFI GTSAC 3 cut(s) 623, 1825, 1873
TseI GCWGC 6 cut(s) 34, 598, 648, 1188, 1234, 1817
Tsp45I GTSAC 3 cut(s) 623, 1825, 1873
TspDTI ATGAA 9 cut(s) 267, 560, 732, 953, 1196, 1323, 1613, 1740, 1849
TspGWI ACGGA 5 cut(s) 185, 650, 1260, 2054, 2162
TspRI CASTG 2 cut(s) 449, 1416
VpaK11BI GGWCC 3 cut(s) 425, 1061, 1637
XapI RAATTY 8 cut(s) 464, 605, 959, 1101, 1241, 1746, 2033, 2171
XceI RCATGY 2 cut(s) 500, 1136
XcmI CCANNNNNNNNNTGG 4 cut(s) 310, 441, 1077, 1408
XhoI CTCGAG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 1 cut(s) 1929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.