Rmu_sc0003807.1_g000011

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003807.1
OG0000145
Physical Location & Seq
Reverse (-)
44290 .. 46287
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003807.1_g000011.1.cds

Sequence Viewer

Length: 1998 bp
atggtggaggagagcgattccggcgtcctcgagcagccaaaaatcgatcacgtcgttgccgtccctatcccgacaatccgaaagatgatggagaagagcgatttcggcgtcattgatatggttgttggggagcctatcggcgagcctgctgcccgcgggcctatcccgatgtctaacagcaggtctttccgtccgatctgcaatcagaacagagcaaagttggcagaagcctggccgatggtcaaatcgtccttggaagaactcgggtattcatgcacaatgagtacggttgattccacagtcgtggtggtatcaccctggtctgcggccccagatatgcgcaaggctgtttatcttttcaatcttttgttcaagactcctgttccggcacctctggcactagagttggcgctccatggcaggcaacatgatctcatcaagcttggcgctcaaaagggtgggatatgcaaaaaatatgggatcaacaaggagaaatttgataaactgtggatacgtctcaaacgctccttaaaggaacttggtgatatgacccactctactctttttctgaacaagagcactcttactgccgtgggtccatctccaagattacactgggtcaggaaggttttgaaattctgcgctattgagaagttgagtcccgcacatgttattagggttttcaaccggaagctgaaacgaaaaacagcgatgatgaagaacagcgatacagtgatgatggagaaaagcgatttcggcatccctgagcagccgaaattcaatcaggaagttggcgaccctgttccgatgttgaacagcagcgggtctttccgtccgatctccaacacaaatcgagcaaagttgacagaagcttggccgatggtcaaattgtccttggaagaactcgggtattcatgcgcaatgagtacggtggattccacagtcttagtggtaccaccctgttctacagatccagatatcatgcgcaaggctaattatcttttccagcttttattcaagactcctgttccggcacctctggcgatagagttggcgctccatggcaggcaacatgatctcatcaagcttggcgctcaaaagggtgggatatgcaaaaaatatgggatcaacaaggagaaatttgataaactgtggatacgtctcaaacgctccttaaaggaacttggtgatctgacccattgtactctatttttgaacaagagcactcttactgctgtgggtccatctccaagattacacttggtcaggagggttttggaaatctgtataaaaagaaagataagtcctgcagatgttattagcacgttgatatgcaagtatgatcaaaaaatttcatttgttcgggatcttgatgtctctaatgtcaagaagactggccatttggtgaacaaagatggtgcagctgaagtgacattgccctttcttgaaagacgagcaacaaggatggaaggagctttgtcaatggtggagtcatcttttgagaaatatggcatttcttgcacactgaatctgattaagcgtaccgtgactatctcaacaactggagcgaccaaagagtacccggatgcttttgagaaagctaggcatcttttgcaacttttgacaacaactaatgtcccgccatctcgggctgtagaattagcgatgaatggcatgaagcatgaattcatcgagatcgggttgcaagaaggtgggctttgctcattgtatggaatcaagaaggaacaatatgttaaacggcgtaaatggctcattcgttctgcgaagcggattcgagaattcacggagtgtgatatctactgcacaggagacactattaccggtgtgagtccctctcttgtgggattgagtatattcaggaggattgtgttgacctgcattgttgaagatacggatcctgctcaccgtataaggaaatttttacgctcagagtcgaaaaggaaactgaagaagattatcaagcgtttgcttgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

665

Amino Acids

74.68

Weight (kDa)

9.71

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 341, 919, 986
Acc36I ACCTGC 2 cut(s) 171, 1904
Acc65I GGTACC 1 cut(s) 952
AccB1I GGYRCC 3 cut(s) 388, 952, 1033
AccII CGCG 1 cut(s) 156
AciI CCGC 7 cut(s) 154, 156, 326, 663, 822, 1640, 1789
AclWI GGATC 6 cut(s) 488, 965, 1133, 1374, 1910, 1923
AcoI YGGCCR 3 cut(s) 233, 875, 1396
AcsI RAATTY 8 cut(s) 494, 635, 776, 1139, 1350, 1685, 1799, 1937
AcuI CTGAAG 2 cut(s) 1446, 1988
AcyI GRCGYC 2 cut(s) 24, 108
AdeI CACNNNGTG 1 cut(s) 1809
AfaI GTAC 6 cut(s) 286, 928, 954, 1204, 1543, 1580
AflIII ACRYGT 1 cut(s) 667
AgeI ACCGGT 1 cut(s) 1841
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 230, 317
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 8 cut(s) 442, 694, 872, 1009, 1087, 1424, 1475, 1601
AluI AGCT 8 cut(s) 442, 694, 872, 1009, 1087, 1424, 1475, 1601
Alw21I GWGCWC 2 cut(s) 581, 1226
Alw26I GTCTC 4 cut(s) 521, 1166, 1381, 1824
AlwI GGATC 6 cut(s) 488, 965, 1133, 1374, 1910, 1923
Ama87I CYCGRG 4 cut(s) 29, 263, 905, 1647
AoxI GGCC 5 cut(s) 158, 233, 327, 875, 1396
ApeKI GCWGC 5 cut(s) 34, 149, 769, 819, 1421
ApoI RAATTY 8 cut(s) 494, 635, 776, 1139, 1350, 1685, 1799, 1937
ArsI GACNNNNNNTTYG 2 cut(s) 1384, 1416
AsiGI ACCGGT 1 cut(s) 1841
Asp718I GGTACC 1 cut(s) 952
AspLEI GCGC 8 cut(s) 342, 412, 449, 644, 920, 987, 1057, 1094
AspS9I GGNCC 4 cut(s) 158, 328, 596, 1241
AsuC2I CCSGG 1 cut(s) 1583
AsuHPI GGTGA 5 cut(s) 306, 554, 1199, 1417, 1916
AvaI CYCGRG 4 cut(s) 29, 263, 905, 1647
AvaII GGWCC 2 cut(s) 596, 1241
BalI TGGCCA 1 cut(s) 1398
BamHI GGATCC 1 cut(s) 1915
BanI GGYRCC 3 cut(s) 388, 952, 1033
BbsI GAAGAC 1 cut(s) 1397
Bbv12I GWGCWC 2 cut(s) 581, 1226
BbvI GCAGC 5 cut(s) 46, 136, 781, 831, 1433
BccI CCATC 9 cut(s) 82, 232, 607, 733, 874, 1252, 1409, 1459, 1651
BceAI ACGGC 3 cut(s) 44, 575, 1775
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 2 cut(s) 232, 319
BciVI GTATCC 2 cut(s) 504, 1149
BclI TGATCA 1 cut(s) 1342
BcnI CCSGG 1 cut(s) 1583
BcoDI GTCTC 4 cut(s) 521, 1166, 1381, 1824
BfaI CTAG 2 cut(s) 401, 1602
BfmI CTRYAG 3 cut(s) 966, 1308, 1653
BfoI RGCGCY 4 cut(s) 413, 450, 1058, 1095
BfuAI ACCTGC 2 cut(s) 171, 1904
BfuI GTATCC 2 cut(s) 504, 1149
BisI GCNGC 6 cut(s) 35, 150, 327, 770, 820, 1422
BlsI GCNGC 6 cut(s) 36, 151, 328, 771, 821, 1423
Bme1390I CCNGG 3 cut(s) 232, 319, 1583
Bme18I GGWCC 2 cut(s) 596, 1241
BmeT110I CYCGRG 4 cut(s) 29, 263, 905, 1647
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 4 cut(s) 158, 328, 596, 1241
BmiI GGNNCC 8 cut(s) 132, 330, 390, 597, 954, 1035, 1242, 1917
BmrFI CCNGG 3 cut(s) 232, 319, 1583
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 3 cut(s) 768, 1576, 1615
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 1397
BplI GAGNNNNNCTC 2 cut(s) 1840, 1872
BpmI CTGGAG 1 cut(s) 1584
Bpu10I CCTNAGC 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 1583
Bsa29I ATCGAT 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 1914
BsaHI GRCGYC 2 cut(s) 24, 108
BsaJI CCNNGG 7 cut(s) 154, 252, 317, 415, 591, 894, 1060
BsaWI WCCGGW 2 cut(s) 687, 1841
Bse118I RCCGGY 1 cut(s) 1841
Bse1I ACTGG 3 cut(s) 620, 1399, 1567
Bse3DI GCAATG 2 cut(s) 927, 1433
Bse8I GATNNNNATC 1 cut(s) 1914
BseBI CCWGG 2 cut(s) 232, 319
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 7 cut(s) 154, 252, 317, 415, 591, 894, 1060
BseGI GGATG 3 cut(s) 759, 1470, 1591
BseJI GATNNNNATC 1 cut(s) 1914
BseMI GCAATG 2 cut(s) 927, 1433
BseMII CTCAG 2 cut(s) 756, 1962
BseNI ACTGG 3 cut(s) 620, 1399, 1567
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 5 cut(s) 46, 136, 781, 831, 1433
BsgI GTGCAG 2 cut(s) 1440, 1807
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 5 cut(s) 160, 235, 329, 877, 1398
BshNI GGYRCC 3 cut(s) 388, 952, 1033
BshTI ACCGGT 1 cut(s) 1841
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 581, 1226
BsiHKCI CYCGRG 4 cut(s) 29, 263, 905, 1647
BsiSI CCGG 6 cut(s) 21, 386, 688, 1031, 1583, 1842
BslFI GGGAC 4 cut(s) 47, 645, 1622, 1836
BsmAI GTCTC 4 cut(s) 521, 1166, 1381, 1824
BsmBI CGTCTC 2 cut(s) 521, 1166
BsmFI GGGAC 4 cut(s) 47, 645, 1622, 1836
BsnI GGCC 5 cut(s) 160, 235, 329, 877, 1398
BsoBI CYCGRG 4 cut(s) 29, 263, 905, 1647
Bsp1286I GDGCHC 2 cut(s) 581, 1226
Bsp19I CCATGG 2 cut(s) 415, 1060
BspACI CCGC 7 cut(s) 154, 156, 326, 663, 822, 1640, 1789
BspANI GGCC 5 cut(s) 160, 235, 329, 877, 1398
BspCNI CTCAG 2 cut(s) 757, 1961
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 8 cut(s) 132, 330, 390, 597, 954, 1035, 1242, 1917
BspMAI CTGCAG 1 cut(s) 1312
BspMI ACCTGC 2 cut(s) 171, 1904
BspPI GGATC 6 cut(s) 488, 965, 1133, 1374, 1910, 1923
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 3 cut(s) 388, 952, 1033
BsrDI GCAATG 2 cut(s) 927, 1433
BsrFI RCCGGY 1 cut(s) 1841
BsrI ACTGG 3 cut(s) 620, 1399, 1567
BssAI RCCGGY 1 cut(s) 1841
BssECI CCNNGG 7 cut(s) 154, 252, 317, 415, 591, 894, 1060
BssNI GRCGYC 2 cut(s) 24, 108
BssT1I CCWWGG 4 cut(s) 252, 415, 894, 1060
Bst2UI CCWGG 2 cut(s) 232, 319
Bst4CI ACNGT 9 cut(s) 289, 301, 507, 733, 931, 943, 1152, 1546, 1928
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 2 cut(s) 24, 108
BstAPI GCANNNNNTGC 2 cut(s) 1518, 1612
BstC8I GCNNGC 6 cut(s) 143, 147, 154, 158, 422, 1067
BstDEI CTNAG 3 cut(s) 765, 946, 1948
BstDSI CCRYGG 4 cut(s) 154, 415, 591, 1060
BstF5I GGATG 3 cut(s) 759, 1470, 1591
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 4 cut(s) 413, 450, 1058, 1095
BstHHI GCGC 8 cut(s) 342, 412, 449, 644, 920, 987, 1057, 1094
BstMAI GTCTC 4 cut(s) 521, 1166, 1381, 1824
BstMWI GCNNNNNNNGC 9 cut(s) 21, 105, 221, 395, 756, 1040, 1518, 1612, 1768
BstNI CCWGG 2 cut(s) 232, 319
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 3 cut(s) 230, 317, 1581
BstSFI CTRYAG 3 cut(s) 966, 1308, 1653
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 5 cut(s) 46, 136, 781, 831, 1433
BstV2I GAAGAC 1 cut(s) 1397
BstX2I RGATCY 3 cut(s) 970, 1366, 1915
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 3 cut(s) 970, 1366, 1915
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 2 cut(s) 504, 1149
BsuRI GGCC 5 cut(s) 160, 235, 329, 877, 1398
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 4 cut(s) 154, 415, 591, 1060
BtgZI GCGATG 2 cut(s) 725, 1679
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 3 cut(s) 759, 1470, 1591
BtsIMutI CAGTG 3 cut(s) 613, 738, 1523
BveI ACCTGC 2 cut(s) 171, 1904
Cac8I GCNNGC 6 cut(s) 143, 147, 154, 158, 422, 1067
CfoI GCGC 8 cut(s) 342, 412, 449, 644, 920, 987, 1057, 1094
Cfr10I RCCGGY 1 cut(s) 1841
Cfr13I GGNCC 4 cut(s) 158, 328, 596, 1241
Cfr42I CCGCGG 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 2 cut(s) 13, 97
Csp6I GTAC 6 cut(s) 285, 927, 953, 1203, 1542, 1579
CspAI ACCGGT 1 cut(s) 1841
CviQI GTAC 6 cut(s) 285, 927, 953, 1203, 1542, 1579
DdeI CTNAG 3 cut(s) 765, 946, 1948
DraIII CACNNNGTG 1 cut(s) 1809
EaeI YGGCCR 3 cut(s) 233, 875, 1396
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 4 cut(s) 252, 415, 894, 1060
Eco32I GATATC 2 cut(s) 979, 1816
Eco47I GGWCC 2 cut(s) 596, 1241
Eco57I CTGAAG 2 cut(s) 1446, 1988
Eco88I CYCGRG 4 cut(s) 29, 263, 905, 1647
EcoRI GAATTC 2 cut(s) 1685, 1799
EcoRII CCWGG 2 cut(s) 230, 317
EcoRV GATATC 2 cut(s) 979, 1816
EcoT14I CCWWGG 4 cut(s) 252, 415, 894, 1060
ErhI CCWWGG 4 cut(s) 252, 415, 894, 1060
Esp3I CGTCTC 2 cut(s) 521, 1166
FalI AAGNNNNNCTT 2 cut(s) 1701, 1733
FaqI GGGAC 4 cut(s) 47, 645, 1622, 1836
FauI CCCGC 5 cut(s) 149, 161, 670, 815, 1647
FbaI TGATCA 1 cut(s) 1342
Fnu4HI GCNGC 6 cut(s) 35, 150, 327, 770, 820, 1422
FokI GGATG 3 cut(s) 746, 1477, 1598
Fsp4HI GCNGC 6 cut(s) 35, 150, 327, 770, 820, 1422
FspBI CTAG 2 cut(s) 401, 1602
FspI TGCGCA 3 cut(s) 341, 919, 986
GlaI GCGC 8 cut(s) 341, 411, 448, 643, 919, 986, 1056, 1093
GluI GCNGC 6 cut(s) 35, 150, 327, 770, 820, 1422
GsuI CTGGAG 1 cut(s) 1584
HaeII RGCGCY 4 cut(s) 413, 450, 1058, 1095
HaeIII GGCC 5 cut(s) 160, 235, 329, 877, 1398
HapII CCGG 6 cut(s) 21, 386, 688, 1031, 1583, 1842
HgaI GACGC 2 cut(s) 13, 97
HhaI GCGC 8 cut(s) 342, 412, 449, 644, 920, 987, 1057, 1094
Hin1I GRCGYC 2 cut(s) 24, 108
Hin6I GCGC 8 cut(s) 340, 410, 447, 642, 918, 985, 1055, 1092
HinP1I GCGC 8 cut(s) 340, 410, 447, 642, 918, 985, 1055, 1092
HincII GTYRAC 2 cut(s) 864, 1893
HindII GTYRAC 2 cut(s) 864, 1893
HindIII AAGCTT 3 cut(s) 440, 870, 1085
HpaII CCGG 6 cut(s) 21, 386, 688, 1031, 1583, 1842
HphI GGTGA 5 cut(s) 306, 554, 1199, 1417, 1916
Hpy166II GTNNAC 3 cut(s) 864, 1408, 1893
Hpy8I GTNNAC 3 cut(s) 864, 1408, 1893
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 619, 1463, 1703, 1735
HpyCH4III ACNGT 9 cut(s) 289, 301, 507, 733, 931, 943, 1152, 1546, 1928
HpyCH4IV ACGT 4 cut(s) 51, 514, 1159, 1325
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 105, 221, 395, 756, 1040, 1518, 1612, 1768
HpyF3I CTNAG 3 cut(s) 765, 946, 1948
HpySE526I ACGT 4 cut(s) 51, 514, 1159, 1325
Hsp92I GRCGYC 2 cut(s) 24, 108
HspAI GCGC 8 cut(s) 340, 410, 447, 642, 918, 985, 1055, 1092
KpnI GGTACC 1 cut(s) 956
Ksp22I TGATCA 1 cut(s) 1342
KspI CCGCGG 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 7 cut(s) 130, 417, 530, 1062, 1175, 1472, 1565
Lsp1109I GCAGC 5 cut(s) 46, 136, 781, 831, 1433
LweI GCATC 3 cut(s) 768, 1576, 1615
MaeI CTAG 2 cut(s) 401, 1602
MaeII ACGT 4 cut(s) 51, 514, 1159, 1325
MaeIII GTNAC 2 cut(s) 1429, 1546
MboII GAAGA 8 cut(s) 106, 269, 730, 911, 1402, 1919, 1981, 1984
MflI RGATCY 3 cut(s) 970, 1366, 1915
MhlI GDGCHC 2 cut(s) 581, 1226
MlsI TGGCCA 1 cut(s) 1398
MluNI TGGCCA 1 cut(s) 1398
MlyI GAGTC 6 cut(s) 370, 667, 1015, 1499, 1858, 1961
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 6 cut(s) 38, 402, 1047, 1263, 1864, 1875
Mox20I TGGCCA 1 cut(s) 1398
MscI TGGCCA 1 cut(s) 1398
MseI TTAA 4 cut(s) 530, 1175, 1536, 1755
MslI CAYNNNNRTG 2 cut(s) 116, 302
Msp20I TGGCCA 1 cut(s) 1398
MspA1I CMGCKG 3 cut(s) 156, 822, 1424
MspI CCGG 6 cut(s) 21, 386, 688, 1031, 1583, 1842
MspR9I CCNGG 3 cut(s) 232, 319, 1583
MvaI CCWGG 2 cut(s) 232, 319
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 9 cut(s) 21, 105, 221, 395, 756, 1040, 1518, 1612, 1768
NciI CCSGG 1 cut(s) 1583
NcoI CCATGG 2 cut(s) 415, 1060
NlaIV GGNNCC 8 cut(s) 132, 330, 390, 597, 954, 1035, 1242, 1917
NmuCI GTSAC 2 cut(s) 1429, 1546
NsbI TGCGCA 3 cut(s) 341, 919, 986
NspI RCATGY 1 cut(s) 671
OliI CACNNNNGTG 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 29
PciI ACATGT 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 57
PfeI GAWTC 6 cut(s) 17, 293, 935, 1528, 1734, 1792
PinAI ACCGGT 1 cut(s) 1841
PkrI GCNGC 6 cut(s) 36, 151, 328, 771, 821, 1423
PleI GAGTC 6 cut(s) 370, 666, 1015, 1498, 1857, 1960
PpsI GAGTC 6 cut(s) 370, 666, 1015, 1498, 1857, 1960
PscI ACATGT 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 230, 317
PspGI CCWGG 2 cut(s) 230, 317
PspN4I GGNNCC 8 cut(s) 132, 330, 390, 597, 954, 1035, 1242, 1917
PspPI GGNCC 4 cut(s) 158, 328, 596, 1241
PspXI VCTCGAGB 1 cut(s) 29
PstI CTGCAG 1 cut(s) 1312
PsuI RGATCY 3 cut(s) 970, 1366, 1915
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 6 cut(s) 286, 928, 954, 1204, 1543, 1580
RsaNI GTAC 6 cut(s) 285, 927, 953, 1203, 1542, 1579
RseI CAYNNNNRTG 2 cut(s) 116, 302
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 530, 1175, 1536, 1755
SatI GCNGC 6 cut(s) 35, 150, 327, 770, 820, 1422
Sau96I GGNCC 4 cut(s) 158, 328, 596, 1241
SchI GAGTC 6 cut(s) 370, 667, 1015, 1499, 1858, 1961
ScrFI CCNGG 3 cut(s) 232, 319, 1583
SduI GDGCHC 2 cut(s) 581, 1226
SfaNI GCATC 3 cut(s) 768, 1576, 1615
SfcI CTRYAG 3 cut(s) 966, 1308, 1653
Sfr274I CTCGAG 1 cut(s) 29
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 2 cut(s) 596, 1241
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 116, 302
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 7 cut(s) 154, 156, 326, 663, 822, 1640, 1789
SspMI CTAG 2 cut(s) 401, 1602
StyD4I CCNGG 3 cut(s) 230, 317, 1581
StyI CCWWGG 4 cut(s) 252, 415, 894, 1060
TaaI ACNGT 9 cut(s) 289, 301, 507, 733, 931, 943, 1152, 1546, 1928
TaiI ACGT 4 cut(s) 54, 517, 1162, 1328
TaqI TCGA 6 cut(s) 30, 45, 853, 1692, 1795, 1955
TatI WGTACW 1 cut(s) 1202
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 6 cut(s) 17, 293, 935, 1528, 1734, 1792
Tru1I TTAA 4 cut(s) 530, 1175, 1536, 1755
Tru9I TTAA 4 cut(s) 530, 1175, 1536, 1755
TscAI CASTG 3 cut(s) 620, 738, 1530
TseFI GTSAC 2 cut(s) 1429, 1546
TseI GCWGC 5 cut(s) 34, 149, 769, 819, 1421
Tsp45I GTSAC 2 cut(s) 1429, 1546
TspDTI ATGAA 8 cut(s) 261, 731, 903, 1344, 1678, 1682, 1691, 1698
TspGWI ACGGA 4 cut(s) 179, 821, 1820, 1928
TspRI CASTG 3 cut(s) 620, 738, 1530
VpaK11BI GGWCC 2 cut(s) 596, 1241
XapI RAATTY 8 cut(s) 494, 635, 776, 1139, 1350, 1685, 1799, 1937
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 3 cut(s) 304, 612, 946
XhoI CTCGAG 1 cut(s) 29
XspI CTAG 2 cut(s) 401, 1602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.