Prupe.2G125300_v2.0.a1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000145
Physical Location & Seq
Reverse (-)
18205963 .. 18208189
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G125300.1

Sequence Viewer

Length: 660 bp
ATGAGTAACCACGTCAATGGCGCGGAGGATCCAATCGTCCACCGCATGGTTATCGACAAGTCTACCCCTGCATCTGACGAAGATAGCCCAGTTGATTACAGCATTCTCCGCATGCCCTTTCTTAGACGCATGACAACAGATTTGCAAGAAGCTTGGCCGGTGTTGCAATCTGCTTTAGAAGAGTATGACATTTCATGTGCATTGGATGTGGATCGGTATTTCATCACATTCACGACAACCAGGACTAAGGACCCATATGCTATTCTCAAGTCTAGATATCTTCTTCGACTTTTGTCAGCAGCTGTTCCTGCACTTCAGGCAGTAAAAGTATTGAATGGAATTCCATGTCACCTCATCTACACTGGGTATCACATAGGTGGGCTTTGCAAAAAATTTGGGATCAAGATGGATAAGTATGTTTCTAGGAAGAAAATACTCATGACTCTCCCGGTACAGGCACTTGAAAAACTGACAGGCTGTGACATTTATCTCCGCCCATCTGATGACCTAGTTGCCGTTATGGGTCCAGTTCAAGGATTGGAACTAGTCAGAAGGATTGTGGAAGACTGCATTGTTCATAATGTTCCTCCGGCACCCCGTGTCAAGAGGCTTACAATTTATGCTCAAACGATTAAGGGAGTTAAGGCATTGAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.67

Weight (kDa)

9.04

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 592
AccB7I CCANNNNNTGG 1 cut(s) 46
AccI GTMKAC 1 cut(s) 62
AccII CGCG 1 cut(s) 23
AciI CCGC 4 cut(s) 23, 43, 109, 493
AclWI GGATC 4 cut(s) 23, 36, 219, 407
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 339, 392
AcuI CTGAAG 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 3 cut(s) 46, 454, 533
AgsI TTSAA 3 cut(s) 334, 464, 533
AhlI ACTAGT 1 cut(s) 544
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 2 cut(s) 152, 302
AluI AGCT 2 cut(s) 152, 302
AlwI GGATC 4 cut(s) 23, 36, 219, 407
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 339, 392
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 250, 524
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 341
AvaII GGWCC 2 cut(s) 250, 524
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 400, 505
BceAI ACGGC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 544
BfaI CTAG 4 cut(s) 273, 423, 509, 545
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 241, 449
Bme18I GGWCC 2 cut(s) 250, 524
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 250, 524
BmiI GGNNCC 4 cut(s) 30, 252, 525, 594
BmrFI CCNGG 2 cut(s) 241, 449
BmrI ACTGGG 2 cut(s) 83, 372
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 2 cut(s) 83, 372
BoxI GACNNNNGTC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 454, 533
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 89, 367, 527
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 46, 454, 533
BseNI ACTGG 3 cut(s) 89, 367, 527
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 592
BsiSI CCGG 3 cut(s) 158, 449, 590
BslI CCNNNNNNNGG 3 cut(s) 46, 454, 533
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 28, 211, 399
BspACI CCGC 4 cut(s) 23, 43, 109, 493
BspANI GGCC 1 cut(s) 157
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 30, 252, 525, 594
BspPI GGATC 4 cut(s) 23, 36, 219, 407
BspT107I GGYRCC 1 cut(s) 592
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 3 cut(s) 89, 367, 527
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 3 cut(s) 28, 211, 399
Bst2UI CCWGG 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 122, 246
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 31, 214, 402
BstMBI GATC 3 cut(s) 28, 211, 399
BstMWI GCNNNNNNNGC 4 cut(s) 108, 163, 308, 317
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 115
BstPAI GACNNNNGTC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 239, 447
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 157
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 250, 524
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 452
CviAII CATG 6 cut(s) 46, 112, 130, 195, 345, 439
CviJI RGCY 7 cut(s) 87, 152, 157, 302, 382, 477, 610
CviKI_1 RGCY 7 cut(s) 87, 152, 157, 302, 382, 477, 610
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 122, 246
DpnI GATC 3 cut(s) 30, 213, 401
DpnII GATC 3 cut(s) 28, 211, 399
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 482
Eco32I GATATC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 250, 524
Eco57I CTGAAG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 239
EcoRV GATATC 1 cut(s) 278
FaeI CATG 6 cut(s) 49, 115, 133, 198, 348, 442
FatI CATG 6 cut(s) 45, 111, 129, 194, 344, 438
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 4 cut(s) 273, 423, 509, 545
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 157
HapII CCGG 3 cut(s) 158, 449, 590
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 23
Hin1II CATG 6 cut(s) 49, 115, 133, 198, 348, 442
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 1 cut(s) 442
HpaII CCGG 3 cut(s) 158, 449, 590
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 40, 63
Hpy188I TCNGA 3 cut(s) 76, 502, 551
Hpy188III TCNNGA 5 cut(s) 232, 273, 403, 439, 604
Hpy8I GTNNAC 2 cut(s) 40, 63
HpyAV CCTTC 1 cut(s) 546
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 7 cut(s) 71, 145, 166, 200, 311, 387, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 163, 308, 317
HpyF3I CTNAG 2 cut(s) 122, 246
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 6 cut(s) 49, 115, 133, 198, 348, 442
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 3 cut(s) 28, 211, 399
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 80
MaeI CTAG 4 cut(s) 273, 423, 509, 545
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 5, 347, 479
MalI GATC 3 cut(s) 30, 213, 401
MboI GATC 3 cut(s) 28, 211, 399
MboII GAAGA 6 cut(s) 92, 191, 272, 275, 439, 575
MflI RGATCY 1 cut(s) 28
MluCI AATT 3 cut(s) 339, 392, 615
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 5 cut(s) 19, 362, 597, 600, 645
MseI TTAA 2 cut(s) 633, 642
MslI CAYNNNNRTG 2 cut(s) 15, 375
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 158, 449, 590
MspR9I CCNGG 2 cut(s) 241, 449
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 108, 163, 308, 317
NciI CCSGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 256
NdeII GATC 3 cut(s) 28, 211, 399
NlaIII CATG 6 cut(s) 49, 115, 133, 198, 348, 442
NlaIV GGNNCC 4 cut(s) 30, 252, 525, 594
NmuCI GTSAC 2 cut(s) 347, 479
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 375
PaeI GCATGC 1 cut(s) 115
PagI TCATGA 1 cut(s) 438
PctI GAATGC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 4 cut(s) 30, 252, 525, 594
PspPI GGNCC 2 cut(s) 250, 524
PspPPI RGGWCCY 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 2 cut(s) 15, 375
SaqAI TTAA 2 cut(s) 633, 642
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 3 cut(s) 28, 211, 399
Sau96I GGNCC 2 cut(s) 250, 524
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 241, 449
SetI ASST 7 cut(s) 15, 154, 304, 354, 379, 510, 656
SfaNI GCATC 1 cut(s) 80
SinI GGWCC 2 cut(s) 250, 524
SmiMI CAYNNNNRTG 2 cut(s) 15, 375
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 544
SphI GCATGC 1 cut(s) 115
Sse9I AATT 3 cut(s) 339, 392, 615
SsiI CCGC 4 cut(s) 23, 43, 109, 493
SspMI CTAG 4 cut(s) 273, 423, 509, 545
StyD4I CCNGG 2 cut(s) 239, 447
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 54, 286
TasI AATT 3 cut(s) 339, 392, 615
Tru1I TTAA 2 cut(s) 633, 642
Tru9I TTAA 2 cut(s) 633, 642
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 2 cut(s) 347, 479
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 347, 479
TspDTI ATGAA 3 cut(s) 183, 211, 566
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 250, 524
XapI RAATTY 2 cut(s) 339, 392
XbaI TCTAGA 1 cut(s) 272
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 4 cut(s) 273, 423, 509, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.