Rroxscaffold_3G00255390

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000145
Physical Location & Seq
Reverse (-)
49649819 .. 49650463
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255390.1

Sequence Viewer

Length: 567 bp
ATGGGAATGGATGAGAAGTGTGGCCCTTGGTTGGATTCATATGGCATGCTTGAAGTAACCTCTTACCTTTTGCCTATCTCAACAGGCCGAGAAACTGAGGTGCAAGAAGCTTGGCCGTTTGTAAAGACAATGAATCCAGATACTATAGACAAGGTTGGGGTTGTTCTTGAACTTGTGGGACGTAATCGAACTAGTATTCCGGCAACCAAGGCAGTAGAAATACTAAATGGCCGTGTGCAACATGAAGTCATCAAGACTGGGTTTCACAATGGTGGGCTTTGTGCAAAATTGGTATACGAGAAGGATAAGTATGTTAAAAACAGGGAAAACGGGGAACGTTTGAGGCAAAACTCACAGGCACTCGGACGCCTGCAAAAGTGTGACATTTATATAAATGGATACATTATTGTTGTAGTGGGGACTTTGGCTGCAGAATTAAGGCTGTTCAGGTCAGTTGTGGAATGTTGTTTTCTTAGAAATGAAGATCCTGTAACAGTTGCCAGGAGGTTAAAACTGGATCGTAAAGTGTACCGGTTGATGAACAAGATTCAAGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.36

Weight (kDa)

9.02

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AclI AACGTT 1 cut(s) 337
AclWI GGATC 2 cut(s) 479, 525
AcoI YGGCCR 2 cut(s) 113, 229
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 3 cut(s) 53, 170, 551
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 500
AleI CACNNNNGTG 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 2 cut(s) 110, 554
AluI AGCT 2 cut(s) 110, 554
AlwI GGATC 2 cut(s) 479, 525
AoxI GGCC 4 cut(s) 22, 85, 113, 229
ApeKI GCWGC 1 cut(s) 428
AsiGI ACCGGT 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 415
BceAI ACGGC 2 cut(s) 100, 216
BciT130I CCWGG 1 cut(s) 502
BciVI GTATCC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 2 cut(s) 144, 429
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 502
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 26, 207
BsaWI WCCGGW 1 cut(s) 531
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 2 cut(s) 262, 519
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 26, 207
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 262, 519
BseXI GCAGC 1 cut(s) 415
BshFI GGCC 4 cut(s) 24, 87, 115, 231
BshTI ACCGGT 1 cut(s) 531
BsiSI CCGG 2 cut(s) 200, 532
BslFI GGGAC 2 cut(s) 192, 433
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 192, 433
BsnI GGCC 4 cut(s) 24, 87, 115, 231
Bsp143I GATC 2 cut(s) 484, 517
BspANI GGCC 4 cut(s) 24, 87, 115, 231
BspCNI CTCAG 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 2 cut(s) 479, 525
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 2 cut(s) 262, 519
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 26, 207
BssMI GATC 2 cut(s) 484, 517
BssNAI GTATAC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 2 cut(s) 26, 207
Bst1107I GTATAC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 496
BstACI GRCGYC 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 47, 371
BstDEI CTNAG 2 cut(s) 96, 473
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 487, 520
BstMBI GATC 2 cut(s) 484, 517
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 500
BstSFI CTRYAG 2 cut(s) 144, 429
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BstZ17I GTATAC 1 cut(s) 295
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 4 cut(s) 24, 87, 115, 231
BtsCI GGATG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 47, 371
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 529
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 2 cut(s) 46, 242
CviJI RGCY 9 cut(s) 24, 87, 110, 115, 231, 277, 428, 442, 554
CviKI_1 RGCY 9 cut(s) 24, 87, 110, 115, 231, 277, 428, 442, 554
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 96, 473
DpnI GATC 2 cut(s) 486, 519
DpnII GATC 2 cut(s) 484, 517
EaeI YGGCCR 2 cut(s) 113, 229
Eco130I CCWWGG 2 cut(s) 26, 207
EcoRII CCWGG 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 26, 207
ErhI CCWWGG 2 cut(s) 26, 207
FaeI CATG 2 cut(s) 49, 245
FaiI YATR 9 cut(s) 40, 42, 47, 146, 243, 295, 312, 390, 392
FaqI GGGAC 2 cut(s) 192, 433
FatI CATG 2 cut(s) 45, 241
FauNDI CATATG 1 cut(s) 40
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 4 cut(s) 24, 87, 115, 231
HapII CCGG 2 cut(s) 200, 532
HgaI GACGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 2 cut(s) 49, 245
HindIII AAGCTT 2 cut(s) 108, 552
HinfI GANTC 3 cut(s) 35, 133, 547
HpaII CCGG 2 cut(s) 200, 532
Hpy166II GTNNAC 2 cut(s) 295, 529
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 3 cut(s) 137, 167, 253
Hpy8I GTNNAC 2 cut(s) 295, 529
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 2 cut(s) 181, 337
HpyCH4V TGCA 5 cut(s) 103, 238, 284, 373, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 96, 473
HpySE526I ACGT 2 cut(s) 181, 337
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 2 cut(s) 49, 245
Kzo9I GATC 2 cut(s) 484, 517
Lsp1109I GCAGC 1 cut(s) 415
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 181, 337
MaeIII GTNAC 3 cut(s) 55, 380, 490
MalI GATC 2 cut(s) 486, 519
MboI GATC 2 cut(s) 484, 517
MboII GAAGA 1 cut(s) 494
MflI RGATCY 1 cut(s) 484
MluCI AATT 2 cut(s) 287, 434
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 4 cut(s) 70, 91, 336, 498
MseI TTAA 3 cut(s) 315, 437, 509
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 2 cut(s) 200, 532
MspR9I CCNGG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeI CATATG 1 cut(s) 40
NdeII GATC 2 cut(s) 484, 517
NlaIII CATG 2 cut(s) 49, 245
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 270
PaeI GCATGC 1 cut(s) 49
PfeI GAWTC 3 cut(s) 35, 133, 547
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 1 cut(s) 430
Psp1406I AACGTT 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspPI GGNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 315, 437, 509
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 484, 517
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 144, 429
SmiMI CAYNNNNRTG 1 cut(s) 270
SpeI ACTAGT 1 cut(s) 191
SphI GCATGC 1 cut(s) 49
Sse9I AATT 2 cut(s) 287, 434
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 500
StyI CCWWGG 2 cut(s) 26, 207
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 2 cut(s) 184, 340
TaqI TCGA 1 cut(s) 187
TasI AATT 2 cut(s) 287, 434
TfiI GAWTC 3 cut(s) 35, 133, 547
Tru1I TTAA 3 cut(s) 315, 437, 509
Tru9I TTAA 3 cut(s) 315, 437, 509
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 5 cut(s) 27, 146, 258, 495, 554
XceI RCATGY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.