Rh7CG200300

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000145
Physical Location & Seq
Forward (+)
17801860 .. 17802195
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG200300.1

Sequence Viewer

Length: 336 bp
ATGGCCATGTGCAATATGCATGAAGTCATCAAGACTGGGTTTCACAATGGTGGGCTTTGTGCAAAATTGGTATACGAGAAGGATAAGTATGTTAAAAACAGGGAAAGTTTGAGTCAAAACTCACAGGCACTCGGACGCCTGTTGAAGTGTGACATTTATATAAATGGATACATTATTGTTGCAGTGGGGACTTCAGCTGCAGAATTAAGGCTGTTCAGGTCAGTTGTGGAATGTTGTTTTCTTAGAAATGAAGATCCTGTAACAGTTGCCAGGAGGTTAAAACTGGATCGTAAAGTGTACCGGTTGATGAACAAGATTCAAGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

9.39

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 72
AclWI GGATC 2 cut(s) 248, 294
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 300
AgsI TTSAA 2 cut(s) 145, 320
AjnI CCWGG 1 cut(s) 269
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 2 cut(s) 197, 323
AluI AGCT 2 cut(s) 197, 323
AlwI GGATC 2 cut(s) 248, 294
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 300
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 271
BciVI GTATCC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 40, 288
BseBI CCWGG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 40, 288
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 300
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 253, 286
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 2 cut(s) 248, 294
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 2 cut(s) 40, 288
BssAI RCCGGY 1 cut(s) 300
BssMI GATC 2 cut(s) 253, 286
BssNAI GTATAC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 242
BstKTI GATC 2 cut(s) 256, 289
BstMBI GATC 2 cut(s) 253, 286
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 73
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 300
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 300
CviAII CATG 2 cut(s) 7, 20
CviJI RGCY 5 cut(s) 5, 55, 197, 211, 323
CviKI_1 RGCY 5 cut(s) 5, 55, 197, 211, 323
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 255, 288
DpnII GATC 2 cut(s) 253, 286
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 269
EcoT22I ATGCAT 1 cut(s) 21
FaeI CATG 2 cut(s) 10, 23
FaiI YATR 7 cut(s) 8, 17, 21, 73, 90, 159, 161
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 6, 19
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 2 cut(s) 10, 23
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 112, 316
HpaII CCGG 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 73, 298
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 73, 298
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 12, 19, 62, 182, 200
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 2 cut(s) 10, 23
Kzo9I GATC 2 cut(s) 253, 286
Lsp1109I GCAGC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 149, 259
MalI GATC 2 cut(s) 255, 288
MboI GATC 2 cut(s) 253, 286
MboII GAAGA 1 cut(s) 263
MflI RGATCY 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 65, 203
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 93, 206, 278
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NdeII GATC 2 cut(s) 253, 286
NlaIII CATG 2 cut(s) 10, 23
NmuCI GTSAC 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 21
OliI CACNNNNGTG 1 cut(s) 48
PfeI GAWTC 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 300
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 93, 206, 278
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 253, 286
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 271
SetI ASST 4 cut(s) 199, 221, 278, 325
SfcI CTRYAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 2 cut(s) 65, 203
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 265
TasI AATT 2 cut(s) 65, 203
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 93, 206, 278
Tru9I TTAA 3 cut(s) 93, 206, 278
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 36, 264, 323
TspRI CASTG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.