Rh2AG050900

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000145
Physical Location & Seq
Reverse (-)
4019105 .. 4032123
13019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG050900.1

Sequence Viewer

Length: 1377 bp
ATGGAGAACCAGAACATCGAGTCCATGGAGTCCGGCCCTTCTTCTTCGAACGAGGAGACCTCTTTCTCTGCGTTCTTCTCTGAAAAACGACAACTAAAGTTGCAAGACGTCTGGCCGGAGCTGGAGTCGTCTTTAGATGCCTATGGCATTTCATGCGCAATTAATCTTCCCCAGCGCTCAGTAACAATCTCAAGGACCCCAACGACCAAGGGTCGAAACTATTACGACAAGGCCAAGAGTGTCGTCGAGCTTCTTGCAACAACTCAAGTGCCACCGCATCTGGCACTGGAAGTATTGAACGGAAATTGGAGATTTCATACTCTAATTAAGACTGGGAATCAAGAAGGTGGGTTCTGCTCCAAGTTCGGCATCAGCCCGGACCAGTTTGCTAAACGAAGGGACTGGCTTGCCGGATCCCTAGAGGCAATTTCGGCACTGACGCTTTGTCATCTTTATGTTAATGAAAACACTGCTGCTGCGGTGGGTTCGGCTGCTTCGGTATTAGAGTTTAGGAGGATTGTGGAAAACTGCATTGTTAGTGATGTGAATCCGGCAGAGTCTAACAACAAGATTAAAAAGTTTTTGAGTTATAAAAACCACGTGCTGCAGAAACGTGGGGTGGATTACACGGCAGTATTGGAGAAGTCTGGCATGAGTGAAGTGACATCTTTTGGTGCGTACGTCGCTAAAGGTCTTAGTAGGAATAAAGAGGTGGACCAAGCCTGGCCTTTTGTGGAGTCGTTTTTAGAACAGTATGGCATTTCATGCACATTGCATAGGGTTCTTCGTTCCATGACATTTTCGACTACCAGAGTGACCAAGGATCCAGATGTTATGGACAGTGTTGGTGCTCTTCTTGAAGTTTTGGGAAGTACTAGTGTTCCGGGGTCGAAGGTGATACAGATATTGGACGGCCGGCTGCAGTATGAATTCATCAAGACCGGGTTTGAAAAGGGTGGGCTCTGCTCGAAATTTGATGGGATCGAGAAGAAGCTTGCTAAGAACAAGCAAAGATTGAAGCGCAACGCAAAGAACCTTGGAGACTTGTTGGTATGTGATGTGTATATTGACAGAAGCAGTGTCGTTGTAGTGGGGAGTTGTGCGACAGGGTTGAAGGAAATGAGGTCAATTGTGGAACGATGTCTGGTTAAAAATGAAGACCCTGCAACAGCGGTGAGGAGGCTAAGATCGTGTAATAAGAAACAGGGTAGTTTGAGATTATCTGATGAGAAGCAGGTCAGTTTGATGAAGAAGCTTGAGGGCGGGTCGAGGCTGCAAGTGAGGCTCAGGTGTAGTGCTCGGTGTAAGGGAGGCGGTGCTGGAGGCTCATGTGGACTGGGCGCGCAGGGCAGAGGCTGCGTTGGGGCAGTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

50.11

Weight (kDa)

9.21

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 127 - 194 4.9e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AatII GACGTC 1 cut(s) 111
Acc16I TGCGCA 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 1225
AccII CGCG 1 cut(s) 1343
AciI CCGC 5 cut(s) 275, 479, 1172, 1263, 1314
AclWI GGATC 5 cut(s) 408, 421, 818, 831, 989
AcoI YGGCCR 2 cut(s) 113, 913
AcsI RAATTY 2 cut(s) 929, 971
AcvI CACGTG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 680, 874
AfeI AGCGCT 1 cut(s) 176
AgsI TTSAA 5 cut(s) 298, 860, 950, 1018, 1114
AhdI GACNNNNNGTC 2 cut(s) 210, 444
AhlI ACTAGT 1 cut(s) 875
AjnI CCWGG 1 cut(s) 722
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 4 cut(s) 121, 250, 994, 1255
AluI AGCT 4 cut(s) 121, 250, 994, 1255
Alw21I GWGCWC 2 cut(s) 853, 1300
Alw26I GTCTC 2 cut(s) 50, 1035
AlwI GGATC 5 cut(s) 408, 421, 818, 831, 989
AlwNI CAGNNNCTG 1 cut(s) 1356
Aor51HI AGCGCT 1 cut(s) 176
AoxI GGCC 5 cut(s) 34, 113, 231, 725, 913
ApeKI GCWGC 7 cut(s) 473, 476, 491, 604, 919, 1273, 1356
ApoI RAATTY 2 cut(s) 929, 971
AseI ATTAAT 1 cut(s) 162
AspLEI GCGC 5 cut(s) 158, 177, 1023, 1343, 1345
AspS9I GGNCC 4 cut(s) 35, 195, 379, 715
AsuC2I CCSGG 3 cut(s) 377, 885, 943
AsuHPI GGTGA 2 cut(s) 907, 1186
AsuII TTCGAA 1 cut(s) 47
AvaII GGWCC 3 cut(s) 195, 379, 715
BamHI GGATCC 2 cut(s) 413, 823
BanII GRGCYC 1 cut(s) 963
BbrPI CACGTG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 1164
Bbv12I GWGCWC 2 cut(s) 853, 1300
BbvI GCAGC 7 cut(s) 460, 463, 478, 591, 906, 1260, 1343
BccI CCATC 1 cut(s) 971
BceAI ACGGC 2 cut(s) 645, 928
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 724
BcnI CCSGG 3 cut(s) 377, 885, 943
BcoDI GTCTC 2 cut(s) 50, 1035
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 2 cut(s) 419, 876
BfmI CTRYAG 2 cut(s) 605, 920
BfoI RGCGCY 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 1225
BisI GCNGC 7 cut(s) 474, 477, 492, 605, 920, 1274, 1357
BlsI GCNGC 7 cut(s) 475, 478, 493, 606, 921, 1275, 1358
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 4 cut(s) 377, 724, 885, 943
Bme18I GGWCC 3 cut(s) 195, 379, 715
BmeRI GACNNNNNGTC 2 cut(s) 210, 444
BmgT120I GGNCC 4 cut(s) 35, 195, 379, 715
BmiI GGNNCC 3 cut(s) 197, 415, 825
BmrFI CCNGG 4 cut(s) 377, 724, 885, 943
BmrI ACTGGG 2 cut(s) 342, 1346
BmsI GCATC 3 cut(s) 127, 286, 378
BmuI ACTGGG 2 cut(s) 342, 1346
BpiI GAAGAC 1 cut(s) 1164
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 2 cut(s) 143, 1341
Bpu10I CCTNAGC 1 cut(s) 1286
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 3 cut(s) 175, 249, 1277
BpuMI CCSGG 3 cut(s) 377, 885, 943
BsaAI YACGTR 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 5 cut(s) 24, 207, 819, 884, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse118I RCCGGY 1 cut(s) 915
Bse1I ACTGG 5 cut(s) 291, 337, 382, 407, 1341
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 5 cut(s) 24, 207, 819, 884, 1036
BseJI GATNNNNATC 1 cut(s) 546
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 2 cut(s) 192, 1300
BseNI ACTGG 5 cut(s) 291, 337, 382, 407, 1341
BsePI GCGCGC 1 cut(s) 1341
BseRI GAGGAG 2 cut(s) 68, 1192
BseX3I CGGCCG 1 cut(s) 913
BseXI GCAGC 7 cut(s) 460, 463, 478, 591, 906, 1260, 1343
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 1343
Bsh1285I CGRYCG 1 cut(s) 916
BshFI GGCC 5 cut(s) 36, 115, 233, 727, 915
BsiEI CGRYCG 1 cut(s) 916
BsiHKAI GWGCWC 2 cut(s) 853, 1300
BsiSI CCGG 8 cut(s) 33, 116, 377, 411, 551, 884, 916, 942
BsiWI CGTACG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 50, 1035
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 5 cut(s) 36, 115, 233, 727, 915
Bso31I GGTCTC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 853, 963, 1300
Bsp143I GATC 4 cut(s) 413, 823, 981, 1187
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 5 cut(s) 275, 479, 1172, 1263, 1314
BspANI GGCC 5 cut(s) 36, 115, 233, 727, 915
BspCNI CTCAG 2 cut(s) 191, 1299
BspFNI CGCG 1 cut(s) 1343
BspLI GGNNCC 3 cut(s) 197, 415, 825
BspMAI CTGCAG 2 cut(s) 609, 924
BspMI ACCTGC 1 cut(s) 1225
BspPI GGATC 5 cut(s) 408, 421, 818, 831, 989
BspQI GCTCTTC 1 cut(s) 858
BspT104I TTCGAA 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 915
BsrI ACTGG 5 cut(s) 291, 337, 382, 407, 1341
BssAI RCCGGY 1 cut(s) 915
BssECI CCNNGG 5 cut(s) 24, 207, 819, 884, 1036
BssHII GCGCGC 1 cut(s) 1341
BssMI GATC 4 cut(s) 413, 823, 981, 1187
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 4 cut(s) 24, 207, 819, 1036
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 753, 842
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 3 cut(s) 153, 765, 1356
BstBAI YACGTR 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 408, 917, 996, 1343
BstDEI CTNAG 5 cut(s) 178, 695, 999, 1184, 1286
BstDSI CCRYGG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 1343
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 5 cut(s) 158, 177, 1023, 1343, 1345
BstKTI GATC 4 cut(s) 416, 826, 984, 1190
BstMAI GTCTC 2 cut(s) 50, 1035
BstMBI GATC 4 cut(s) 413, 823, 981, 1187
BstMCI CGRYCG 1 cut(s) 916
BstMWI GCNNNNNNNGC 7 cut(s) 153, 431, 683, 765, 1282, 1347, 1356
BstNI CCWGG 1 cut(s) 724
BstSCI CCNGG 4 cut(s) 375, 722, 883, 941
BstSFI CTRYAG 2 cut(s) 605, 920
BstUI CGCG 1 cut(s) 1343
BstV1I GCAGC 7 cut(s) 460, 463, 478, 591, 906, 1260, 1343
BstV2I GAAGAC 1 cut(s) 1164
BstX2I RGATCY 2 cut(s) 413, 823
BstYI RGATCY 2 cut(s) 413, 823
BstZI CGGCCG 1 cut(s) 913
BsuRI GGCC 5 cut(s) 36, 115, 233, 727, 915
BtgI CCRYGG 1 cut(s) 24
BtsI GCAGTG 3 cut(s) 468, 1084, 1374
BtsIMutI CAGTG 6 cut(s) 284, 434, 468, 847, 1084, 1374
BveI ACCTGC 1 cut(s) 1225
Cac8I GCNNGC 4 cut(s) 408, 917, 996, 1343
CaiI CAGNNNCTG 1 cut(s) 1356
CfoI GCGC 5 cut(s) 158, 177, 1023, 1343, 1345
Cfr10I RCCGGY 1 cut(s) 915
Cfr13I GGNCC 4 cut(s) 35, 195, 379, 715
CseI GACGC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 679, 873
CviAII CATG 6 cut(s) 25, 153, 652, 765, 793, 1329
CviQI GTAC 2 cut(s) 679, 873
DdeI CTNAG 5 cut(s) 178, 695, 999, 1184, 1286
DpnI GATC 4 cut(s) 415, 825, 983, 1189
DpnII GATC 4 cut(s) 413, 823, 981, 1187
DriI GACNNNNNGTC 2 cut(s) 210, 444
EaeI YGGCCR 2 cut(s) 113, 913
EagI CGGCCG 1 cut(s) 913
Eam1104I CTCTTC 1 cut(s) 858
Eam1105I GACNNNNNGTC 2 cut(s) 210, 444
EarI CTCTTC 1 cut(s) 858
EclXI CGGCCG 1 cut(s) 913
Eco130I CCWWGG 4 cut(s) 24, 207, 819, 1036
Eco24I GRGCYC 1 cut(s) 963
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 3 cut(s) 195, 379, 715
Eco47III AGCGCT 1 cut(s) 176
Eco52I CGGCCG 1 cut(s) 913
Eco72I CACGTG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 722
EcoT14I CCWWGG 4 cut(s) 24, 207, 819, 1036
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 4 cut(s) 24, 207, 819, 1036
FaeI CATG 6 cut(s) 28, 156, 655, 768, 796, 1332
FaqI GGGAC 1 cut(s) 413
FatI CATG 6 cut(s) 24, 152, 651, 764, 792, 1328
FauI CCCGC 1 cut(s) 1256
Fnu4HI GCNGC 7 cut(s) 474, 477, 492, 605, 920, 1274, 1357
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 7 cut(s) 474, 477, 492, 605, 920, 1274, 1357
FspBI CTAG 2 cut(s) 419, 876
FspI TGCGCA 1 cut(s) 157
GlaI GCGC 5 cut(s) 157, 176, 1022, 1342, 1344
GluI GCNGC 7 cut(s) 474, 477, 492, 605, 920, 1274, 1357
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 143, 1341
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 5 cut(s) 36, 115, 233, 727, 915
HapII CCGG 8 cut(s) 33, 116, 377, 411, 551, 884, 916, 942
HgaI GACGC 1 cut(s) 448
HhaI GCGC 5 cut(s) 158, 177, 1023, 1343, 1345
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 28, 156, 655, 768, 796, 1332
Hin6I GCGC 5 cut(s) 156, 175, 1021, 1341, 1343
HinP1I GCGC 5 cut(s) 156, 175, 1021, 1341, 1343
HindIII AAGCTT 2 cut(s) 992, 1253
HinfI GANTC 7 cut(s) 20, 29, 125, 337, 547, 557, 737
HpaII CCGG 8 cut(s) 33, 116, 377, 411, 551, 884, 916, 942
HphI GGTGA 2 cut(s) 907, 1186
Hpy166II GTNNAC 2 cut(s) 715, 1334
Hpy188I TCNGA 2 cut(s) 82, 1225
Hpy188III TCNNGA 5 cut(s) 341, 827, 857, 937, 985
Hpy8I GTNNAC 2 cut(s) 715, 1334
Hpy99I CGWCG 2 cut(s) 248, 686
HpyAV CCTTC 5 cut(s) 48, 338, 390, 886, 1108
HpyCH4III ACNGT 2 cut(s) 753, 842
HpyCH4IV ACGT 4 cut(s) 108, 600, 613, 681
HpyCH4V TGCA 9 cut(s) 103, 257, 531, 607, 768, 775, 922, 1166, 1276
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 431, 683, 765, 1282, 1347, 1356
HpyF3I CTNAG 5 cut(s) 178, 695, 999, 1184, 1286
HpySE526I ACGT 4 cut(s) 108, 600, 613, 681
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 28, 156, 655, 768, 796, 1332
HspAI GCGC 5 cut(s) 156, 175, 1021, 1341, 1343
KroI GCCGGC 1 cut(s) 915
KroNI GCCGGC 1 cut(s) 917
Kzo9I GATC 4 cut(s) 413, 823, 981, 1187
LguI GCTCTTC 1 cut(s) 858
LmnI GCTCC 2 cut(s) 118, 362
Lsp1109I GCAGC 7 cut(s) 460, 463, 478, 591, 906, 1260, 1343
LweI GCATC 3 cut(s) 127, 286, 378
MaeI CTAG 2 cut(s) 419, 876
MaeII ACGT 4 cut(s) 108, 600, 613, 681
MaeIII GTNAC 3 cut(s) 181, 661, 814
MalI GATC 4 cut(s) 415, 825, 983, 1189
MboI GATC 4 cut(s) 413, 823, 981, 1187
MboII GAAGA 9 cut(s) 33, 36, 67, 158, 776, 845, 1000, 1169, 1261
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 2 cut(s) 413, 823
MhlI GDGCHC 3 cut(s) 853, 963, 1300
MluCI AATT 7 cut(s) 159, 304, 324, 426, 929, 971, 1128
MlyI GAGTC 5 cut(s) 29, 38, 134, 566, 746
MroNI GCCGGC 1 cut(s) 915
MseI TTAA 5 cut(s) 162, 327, 459, 573, 1149
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 1172
MspI CCGG 8 cut(s) 33, 116, 377, 411, 551, 884, 916, 942
MspR9I CCNGG 4 cut(s) 377, 724, 885, 943
MunI CAATTG 1 cut(s) 1128
MvaI CCWGG 1 cut(s) 724
MvnI CGCG 1 cut(s) 1343
MwoI GCNNNNNNNGC 7 cut(s) 153, 431, 683, 765, 1282, 1347, 1356
NaeI GCCGGC 1 cut(s) 917
NciI CCSGG 3 cut(s) 377, 885, 943
NcoI CCATGG 1 cut(s) 24
NdeII GATC 4 cut(s) 413, 823, 981, 1187
NgoMIV GCCGGC 1 cut(s) 915
NlaIII CATG 6 cut(s) 28, 156, 655, 768, 796, 1332
NlaIV GGNNCC 3 cut(s) 197, 415, 825
NmuCI GTSAC 2 cut(s) 661, 814
NsbI TGCGCA 1 cut(s) 157
NspV TTCGAA 1 cut(s) 47
PauI GCGCGC 1 cut(s) 1341
PciSI GCTCTTC 1 cut(s) 858
PdiI GCCGGC 1 cut(s) 917
PfeI GAWTC 2 cut(s) 337, 547
Pfl23II CGTACG 1 cut(s) 678
PkrI GCNGC 7 cut(s) 475, 478, 493, 606, 921, 1275, 1358
PleI GAGTC 5 cut(s) 28, 37, 133, 565, 745
PmaCI CACGTG 1 cut(s) 601
PmlI CACGTG 1 cut(s) 601
PpsI GAGTC 5 cut(s) 28, 37, 133, 565, 745
Ppu21I YACGTR 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 162
PsiI TTATAA 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 722
PspCI CACGTG 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 722
PspLI CGTACG 1 cut(s) 678
PspN4I GGNNCC 3 cut(s) 197, 415, 825
PspPI GGNCC 4 cut(s) 35, 195, 379, 715
PspPPI RGGWCCY 1 cut(s) 195
PstI CTGCAG 2 cut(s) 609, 924
PstNI CAGNNNCTG 1 cut(s) 1356
PsuI RGATCY 2 cut(s) 413, 823
PteI GCGCGC 1 cut(s) 1341
RsaI GTAC 2 cut(s) 680, 874
RsaNI GTAC 2 cut(s) 679, 873
RseI CAYNNNNRTG 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 5 cut(s) 162, 327, 459, 573, 1149
SatI GCNGC 7 cut(s) 474, 477, 492, 605, 920, 1274, 1357
Sau3AI GATC 4 cut(s) 413, 823, 981, 1187
Sau96I GGNCC 4 cut(s) 35, 195, 379, 715
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 5 cut(s) 29, 38, 134, 566, 746
ScrFI CCNGG 4 cut(s) 377, 724, 885, 943
SduI GDGCHC 3 cut(s) 853, 963, 1300
SfaNI GCATC 3 cut(s) 127, 286, 378
SfcI CTRYAG 2 cut(s) 605, 920
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 3 cut(s) 195, 379, 715
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 190, 264, 1256
SmoI CTYRAG 3 cut(s) 190, 264, 1256
SpeI ACTAGT 1 cut(s) 875
Sse9I AATT 7 cut(s) 159, 304, 324, 426, 929, 971, 1128
SsiI CCGC 5 cut(s) 275, 479, 1172, 1263, 1314
SspMI CTAG 2 cut(s) 419, 876
StyD4I CCNGG 4 cut(s) 375, 722, 883, 941
StyI CCWWGG 4 cut(s) 24, 207, 819, 1036
TaaI ACNGT 2 cut(s) 753, 842
TaiI ACGT 4 cut(s) 111, 603, 616, 684
TaqI TCGA 9 cut(s) 18, 47, 214, 246, 803, 890, 968, 984, 1268
TasI AATT 7 cut(s) 159, 304, 324, 426, 929, 971, 1128
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 2 cut(s) 337, 547
Tru1I TTAA 5 cut(s) 162, 327, 459, 573, 1149
Tru9I TTAA 5 cut(s) 162, 327, 459, 573, 1149
TscAI CASTG 6 cut(s) 291, 441, 475, 847, 1084, 1374
TseFI GTSAC 2 cut(s) 661, 814
TseI GCWGC 7 cut(s) 473, 476, 491, 604, 919, 1273, 1356
Tsp45I GTSAC 2 cut(s) 661, 814
TspDTI ATGAA 8 cut(s) 141, 305, 477, 753, 922, 942, 1170, 1262
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 6 cut(s) 291, 441, 475, 847, 1084, 1374
VpaK11BI GGWCC 3 cut(s) 195, 379, 715
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 2 cut(s) 929, 971
XspI CTAG 2 cut(s) 419, 876
ZraI GACGTC 1 cut(s) 109
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.