rRNA processing
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 636 |
| AciI | CCGC | 3 cut(s) | 168, 209, 634 |
| AcsI | RAATTY | 1 cut(s) | 83 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfaI | GTAC | 3 cut(s) | 184, 591, 615 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 236, 396 |
| AgsI | TTSAA | 4 cut(s) | 21, 89, 126, 219 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AluBI | AGCT | 4 cut(s) | 17, 146, 571, 624 |
| AluI | AGCT | 4 cut(s) | 17, 146, 571, 624 |
| Alw26I | GTCTC | 1 cut(s) | 92 |
| AoxI | GGCC | 1 cut(s) | 6 |
| ApoI | RAATTY | 1 cut(s) | 83 |
| AsuC2I | CCSGG | 1 cut(s) | 486 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 709 |
| AsuNHI | GCTAGC | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BanII | GRGCYC | 2 cut(s) | 134, 256 |
| BbsI | GAAGAC | 1 cut(s) | 111 |
| BccI | CCATC | 3 cut(s) | 346, 353, 461 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BcnI | CCSGG | 1 cut(s) | 486 |
| BcoDI | GTCTC | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 177, 621 |
| BmcAI | AGTACT | 1 cut(s) | 184 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 486 |
| BmiI | GGNNCC | 1 cut(s) | 418 |
| BmrFI | CCNGG | 2 cut(s) | 237, 486 |
| BmsI | GCATC | 1 cut(s) | 282 |
| BmtI | GCTAGC | 1 cut(s) | 624 |
| BpiI | GAAGAC | 1 cut(s) | 111 |
| BpuMI | CCSGG | 1 cut(s) | 486 |
| BsaI | GGTCTC | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 235 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 57, 87 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 236, 396 |
| Bse1I | ACTGG | 2 cut(s) | 190, 621 |
| Bse3DI | GCAATG | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 235 |
| BseGI | GGATG | 2 cut(s) | 449, 514 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 236, 396 |
| BseMI | GCAATG | 1 cut(s) | 271 |
| BseNI | ACTGG | 2 cut(s) | 190, 621 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 485 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 236, 396 |
| BsmAI | GTCTC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 646 |
| BsnI | GGCC | 1 cut(s) | 8 |
| Bso31I | GGTCTC | 1 cut(s) | 92 |
| Bsp1286I | GDGCHC | 3 cut(s) | 134, 168, 256 |
| Bsp143I | GATC | 2 cut(s) | 370, 753 |
| BspACI | CCGC | 3 cut(s) | 168, 209, 634 |
| BspANI | GGCC | 1 cut(s) | 8 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspLI | GGNNCC | 1 cut(s) | 418 |
| BspOI | GCTAGC | 1 cut(s) | 624 |
| BspTNI | GGTCTC | 1 cut(s) | 92 |
| BsrDI | GCAATG | 1 cut(s) | 271 |
| BsrI | ACTGG | 2 cut(s) | 190, 621 |
| BssECI | CCNNGG | 1 cut(s) | 235 |
| BssMI | GATC | 2 cut(s) | 370, 753 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 1 cut(s) | 631 |
| Bst6I | CTCTTC | 3 cut(s) | 90, 463, 507 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 622 |
| BstDEI | CTNAG | 2 cut(s) | 465, 641 |
| BstEII | GGTNACC | 1 cut(s) | 718 |
| BstF5I | GGATG | 2 cut(s) | 449, 514 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstKTI | GATC | 2 cut(s) | 373, 756 |
| BstMAI | GTCTC | 1 cut(s) | 92 |
| BstMBI | GATC | 2 cut(s) | 370, 753 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 270 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstNSI | RCATGY | 1 cut(s) | 43 |
| BstPI | GGTNACC | 1 cut(s) | 718 |
| BstSCI | CCNGG | 2 cut(s) | 235, 484 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV2I | GAAGAC | 1 cut(s) | 111 |
| BsuRI | GGCC | 1 cut(s) | 8 |
| BtgZI | GCGATG | 1 cut(s) | 324 |
| BtsCI | GGATG | 2 cut(s) | 449, 514 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 622 |
| Csp6I | GTAC | 3 cut(s) | 183, 590, 614 |
| CviAII | CATG | 2 cut(s) | 40, 694 |
| CviQI | GTAC | 3 cut(s) | 183, 590, 614 |
| DdeI | CTNAG | 2 cut(s) | 465, 641 |
| DpnI | GATC | 2 cut(s) | 372, 755 |
| DpnII | GATC | 2 cut(s) | 370, 753 |
| Eam1104I | CTCTTC | 3 cut(s) | 90, 463, 507 |
| EarI | CTCTTC | 3 cut(s) | 90, 463, 507 |
| Eco24I | GRGCYC | 2 cut(s) | 134, 256 |
| Eco31I | GGTCTC | 1 cut(s) | 92 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco91I | GGTNACC | 1 cut(s) | 718 |
| EcoO65I | GGTNACC | 1 cut(s) | 718 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| EcoT22I | ATGCAT | 2 cut(s) | 602, 738 |
| EcoT38I | GRGCYC | 2 cut(s) | 134, 256 |
| FaeI | CATG | 2 cut(s) | 43, 697 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 376, 408, 557, 589 |
| FatI | CATG | 2 cut(s) | 39, 693 |
| FauI | CCCGC | 1 cut(s) | 175 |
| FokI | GGATG | 2 cut(s) | 436, 521 |
| FriOI | GRGCYC | 2 cut(s) | 134, 256 |
| FspBI | CTAG | 2 cut(s) | 177, 621 |
| HaeIII | GGCC | 1 cut(s) | 8 |
| HapII | CCGG | 1 cut(s) | 485 |
| Hin1II | CATG | 2 cut(s) | 43, 697 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HinfI | GANTC | 2 cut(s) | 137, 438 |
| HpaII | CCGG | 1 cut(s) | 485 |
| HphI | GGTGA | 2 cut(s) | 344, 709 |
| Hpy166II | GTNNAC | 3 cut(s) | 242, 335, 614 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 136, 777 |
| Hpy188III | TCNNGA | 3 cut(s) | 219, 324, 435 |
| Hpy8I | GTNNAC | 3 cut(s) | 242, 335, 614 |
| HpyAV | CCTTC | 2 cut(s) | 520, 775 |
| HpyCH4III | ACNGT | 1 cut(s) | 631 |
| HpyCH4V | TGCA | 4 cut(s) | 383, 600, 736, 762 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 270 |
| HpyF3I | CTNAG | 2 cut(s) | 465, 641 |
| Hsp92II | CATG | 2 cut(s) | 43, 697 |
| Kzo9I | GATC | 2 cut(s) | 370, 753 |
| LmnI | GCTCC | 1 cut(s) | 151 |
| LpnPI | CCDG | 8 cut(s) | 22, 171, 222, 249, 357, 420, 498, 602 |
| LweI | GCATC | 1 cut(s) | 282 |
| MaeI | CTAG | 2 cut(s) | 177, 621 |
| MaeIII | GTNAC | 2 cut(s) | 307, 718 |
| MalI | GATC | 2 cut(s) | 372, 755 |
| MboI | GATC | 2 cut(s) | 370, 753 |
| MboII | GAAGA | 8 cut(s) | 107, 111, 114, 132, 368, 450, 524, 790 |
| MfeI | CAATTG | 1 cut(s) | 724 |
| MhlI | GDGCHC | 3 cut(s) | 134, 168, 256 |
| MluCI | AATT | 5 cut(s) | 83, 533, 662, 724, 763 |
| MlyI | GAGTC | 1 cut(s) | 447 |
| MmeI | TCCRAC | 1 cut(s) | 24 |
| MnlI | CCTC | 3 cut(s) | 59, 255, 499 |
| Mph1103I | ATGCAT | 2 cut(s) | 602, 738 |
| MseI | TTAA | 2 cut(s) | 297, 531 |
| MspA1I | CMGCKG | 2 cut(s) | 170, 209 |
| MspI | CCGG | 1 cut(s) | 485 |
| MspR9I | CCNGG | 2 cut(s) | 237, 486 |
| MunI | CAATTG | 1 cut(s) | 724 |
| Mva1269I | GAATGC | 1 cut(s) | 646 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 270 |
| NciI | CCSGG | 1 cut(s) | 486 |
| NdeII | GATC | 2 cut(s) | 370, 753 |
| NheI | GCTAGC | 1 cut(s) | 620 |
| NlaIII | CATG | 2 cut(s) | 43, 697 |
| NlaIV | GGNNCC | 1 cut(s) | 418 |
| NsiI | ATGCAT | 2 cut(s) | 602, 738 |
| NspI | RCATGY | 1 cut(s) | 43 |
| PctI | GAATGC | 1 cut(s) | 646 |
| PfeI | GAWTC | 1 cut(s) | 137 |
| PleI | GAGTC | 1 cut(s) | 446 |
| PpsI | GAGTC | 1 cut(s) | 446 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspEI | GGTNACC | 1 cut(s) | 718 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 1 cut(s) | 418 |
| RsaI | GTAC | 3 cut(s) | 184, 591, 615 |
| RsaNI | GTAC | 3 cut(s) | 183, 590, 614 |
| SaqAI | TTAA | 2 cut(s) | 297, 531 |
| Sau3AI | GATC | 2 cut(s) | 370, 753 |
| ScaI | AGTACT | 1 cut(s) | 184 |
| SchI | GAGTC | 1 cut(s) | 447 |
| ScrFI | CCNGG | 2 cut(s) | 237, 486 |
| SduI | GDGCHC | 3 cut(s) | 134, 168, 256 |
| SetI | ASST | 9 cut(s) | 19, 148, 247, 305, 432, 531, 573, 626, 786 |
| SfaNI | GCATC | 1 cut(s) | 282 |
| Sse9I | AATT | 5 cut(s) | 83, 533, 662, 724, 763 |
| SsiI | CCGC | 3 cut(s) | 168, 209, 634 |
| SspMI | CTAG | 2 cut(s) | 177, 621 |
| StyD4I | CCNGG | 2 cut(s) | 235, 484 |
| TaaI | ACNGT | 1 cut(s) | 631 |
| TaqI | TCGA | 2 cut(s) | 579, 756 |
| TasI | AATT | 5 cut(s) | 83, 533, 662, 724, 763 |
| TatI | WGTACW | 3 cut(s) | 182, 589, 613 |
| TfiI | GAWTC | 1 cut(s) | 137 |
| Tru1I | TTAA | 2 cut(s) | 297, 531 |
| Tru9I | TTAA | 2 cut(s) | 297, 531 |
| TspDTI | ATGAA | 5 cut(s) | 17, 120, 365, 369, 525 |
| XapI | RAATTY | 1 cut(s) | 83 |
| XceI | RCATGY | 1 cut(s) | 43 |
| XspI | CTAG | 2 cut(s) | 177, 621 |
| ZrmI | AGTACT | 1 cut(s) | 184 |
| Zsp2I | ATGCAT | 2 cut(s) | 602, 738 |