Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 114 |
| AccI | GTMKAC | 1 cut(s) | 259 |
| AccII | CGCG | 1 cut(s) | 362 |
| AccIII | TCCGGA | 1 cut(s) | 336 |
| AciI | CCGC | 7 cut(s) | 140, 248, 360, 426, 470, 490, 657 |
| AclWI | GGATC | 5 cut(s) | 509, 522, 699, 734, 998 |
| AcoI | YGGCCR | 2 cut(s) | 40, 405 |
| AcsI | RAATTY | 2 cut(s) | 376, 608 |
| AcuI | CTGAAG | 1 cut(s) | 720 |
| AdeI | CACNNNGTG | 1 cut(s) | 944 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 98, 99, 161, 336 |
| AgsI | TTSAA | 4 cut(s) | 459, 578, 776, 1025 |
| AhlI | ACTAGT | 1 cut(s) | 811 |
| AjnI | CCWGG | 2 cut(s) | 864, 969 |
| AluBI | AGCT | 5 cut(s) | 208, 562, 761, 920, 1028 |
| AluI | AGCT | 5 cut(s) | 208, 562, 761, 920, 1028 |
| Alw21I | GWGCWC | 1 cut(s) | 686 |
| Alw26I | GTCTC | 5 cut(s) | 115, 196, 358, 405, 589 |
| Alw44I | GTGCAC | 1 cut(s) | 682 |
| AlwI | GGATC | 5 cut(s) | 509, 522, 699, 734, 998 |
| Aor13HI | TCCGGA | 1 cut(s) | 336 |
| AoxI | GGCC | 4 cut(s) | 40, 405, 641, 673 |
| ApaLI | GTGCAC | 1 cut(s) | 682 |
| ApeKI | GCWGC | 2 cut(s) | 492, 628 |
| ApoI | RAATTY | 2 cut(s) | 376, 608 |
| AspS9I | GGNCC | 1 cut(s) | 999 |
| AsuHPI | GGTGA | 3 cut(s) | 154, 285, 709 |
| AvaII | GGWCC | 1 cut(s) | 999 |
| BaeGI | GKGCMC | 1 cut(s) | 686 |
| BalI | TGGCCA | 1 cut(s) | 42 |
| BamHI | GGATCC | 1 cut(s) | 514 |
| BauI | CACGAG | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 915 |
| Bbv12I | GWGCWC | 1 cut(s) | 686 |
| BbvI | GCAGC | 2 cut(s) | 504, 615 |
| BceAI | ACGGC | 1 cut(s) | 487 |
| BciT130I | CCWGG | 2 cut(s) | 866, 971 |
| BcoDI | GTCTC | 5 cut(s) | 115, 196, 358, 405, 589 |
| BcuI | ACTAGT | 1 cut(s) | 811 |
| BfaI | CTAG | 2 cut(s) | 614, 812 |
| BfuAI | ACCTGC | 1 cut(s) | 114 |
| BisI | GCNGC | 2 cut(s) | 493, 629 |
| BlsI | GCNGC | 2 cut(s) | 494, 630 |
| Bme1390I | CCNGG | 2 cut(s) | 866, 971 |
| Bme18I | GGWCC | 1 cut(s) | 999 |
| BmgT120I | GGNCC | 1 cut(s) | 999 |
| BmiI | GGNNCC | 1 cut(s) | 516 |
| BmrFI | CCNGG | 2 cut(s) | 866, 971 |
| BmsI | GCATC | 4 cut(s) | 265, 299, 489, 517 |
| BpiI | GAAGAC | 1 cut(s) | 915 |
| BpmI | CTGGAG | 1 cut(s) | 548 |
| BpuEI | CTTGAG | 1 cut(s) | 827 |
| BsaI | GGTCTC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 1 cut(s) | 865 |
| BsaWI | WCCGGW | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 98, 99, 161, 336 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 428 |
| Bse1I | ACTGG | 1 cut(s) | 1002 |
| Bse3DI | GCAATG | 2 cut(s) | 166, 345 |
| BseAI | TCCGGA | 1 cut(s) | 336 |
| BseBI | CCWGG | 2 cut(s) | 866, 971 |
| BseDI | CCNNGG | 1 cut(s) | 865 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 98, 99, 161, 336 |
| BseMI | GCAATG | 2 cut(s) | 166, 345 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 1002 |
| BseRI | GAGGAG | 3 cut(s) | 160, 524, 557 |
| BseSI | GKGCMC | 1 cut(s) | 686 |
| BseX3I | CGGCCG | 1 cut(s) | 405 |
| BseXI | GCAGC | 2 cut(s) | 504, 615 |
| BsgI | GTGCAG | 1 cut(s) | 921 |
| Bsh1236I | CGCG | 1 cut(s) | 362 |
| Bsh1285I | CGRYCG | 1 cut(s) | 408 |
| BshFI | GGCC | 4 cut(s) | 42, 407, 643, 675 |
| BsiEI | CGRYCG | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 1 cut(s) | 686 |
| BsiSI | CCGG | 5 cut(s) | 337, 404, 408, 429, 797 |
| BslFI | GGGAC | 1 cut(s) | 822 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 98, 99, 161, 336 |
| BsmAI | GTCTC | 5 cut(s) | 115, 196, 358, 405, 589 |
| BsmBI | CGTCTC | 1 cut(s) | 589 |
| BsmFI | GGGAC | 1 cut(s) | 822 |
| BsnI | GGCC | 4 cut(s) | 42, 407, 643, 675 |
| Bso31I | GGTCTC | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 1 cut(s) | 686 |
| Bsp13I | TCCGGA | 1 cut(s) | 336 |
| Bsp143I | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| BspACI | CCGC | 7 cut(s) | 140, 248, 360, 426, 470, 490, 657 |
| BspANI | GGCC | 4 cut(s) | 42, 407, 643, 675 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspEI | TCCGGA | 1 cut(s) | 336 |
| BspFNI | CGCG | 1 cut(s) | 362 |
| BspHI | TCATGA | 1 cut(s) | 922 |
| BspLI | GGNNCC | 1 cut(s) | 516 |
| BspMI | ACCTGC | 1 cut(s) | 114 |
| BspPI | GGATC | 5 cut(s) | 509, 522, 699, 734, 998 |
| BspQI | GCTCTTC | 1 cut(s) | 959 |
| BspTNI | GGTCTC | 1 cut(s) | 358 |
| BsrDI | GCAATG | 2 cut(s) | 166, 345 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 428 |
| BsrI | ACTGG | 1 cut(s) | 1002 |
| BssAI | RCCGGY | 2 cut(s) | 407, 428 |
| BssECI | CCNNGG | 1 cut(s) | 865 |
| BssMI | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| BssSI | CACGAG | 1 cut(s) | 36 |
| Bst2BI | CACGAG | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 2 cut(s) | 866, 971 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 914 |
| Bst6I | CTCTTC | 3 cut(s) | 602, 660, 959 |
| BstC8I | GCNNGC | 1 cut(s) | 280 |
| BstDEI | CTNAG | 2 cut(s) | 204, 661 |
| BstFNI | CGCG | 1 cut(s) | 362 |
| BstKTI | GATC | 5 cut(s) | 152, 517, 694, 742, 993 |
| BstMAI | GTCTC | 5 cut(s) | 115, 196, 358, 405, 589 |
| BstMBI | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| BstMCI | CGRYCG | 1 cut(s) | 408 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 681 |
| BstNI | CCWGG | 2 cut(s) | 866, 971 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstSCI | CCNGG | 2 cut(s) | 864, 969 |
| BstSLI | GKGCMC | 1 cut(s) | 686 |
| BstUI | CGCG | 1 cut(s) | 362 |
| BstV1I | GCAGC | 2 cut(s) | 504, 615 |
| BstV2I | GAAGAC | 1 cut(s) | 915 |
| BstX2I | RGATCY | 3 cut(s) | 514, 691, 739 |
| BstYI | RGATCY | 3 cut(s) | 514, 691, 739 |
| BstZI | CGGCCG | 1 cut(s) | 405 |
| BsuRI | GGCC | 4 cut(s) | 42, 407, 643, 675 |
| BtsIMutI | CAGTG | 1 cut(s) | 1009 |
| BveI | ACCTGC | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 280 |
| CciI | TCATGA | 1 cut(s) | 922 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 428 |
| Cfr13I | GGNCC | 1 cut(s) | 999 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 447, 482 |
| CviAII | CATG | 4 cut(s) | 279, 639, 878, 923 |
| DdeI | CTNAG | 2 cut(s) | 204, 661 |
| DpnI | GATC | 5 cut(s) | 151, 516, 693, 741, 992 |
| DpnII | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| DraIII | CACNNNGTG | 1 cut(s) | 944 |
| EaeI | YGGCCR | 2 cut(s) | 40, 405 |
| EagI | CGGCCG | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 3 cut(s) | 602, 660, 959 |
| EarI | CTCTTC | 3 cut(s) | 602, 660, 959 |
| EciI | GGCGGA | 2 cut(s) | 485, 646 |
| EclXI | CGGCCG | 1 cut(s) | 405 |
| Eco31I | GGTCTC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 1 cut(s) | 999 |
| Eco52I | CGGCCG | 1 cut(s) | 405 |
| Eco57I | CTGAAG | 1 cut(s) | 720 |
| EcoRII | CCWGG | 2 cut(s) | 864, 969 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| Esp3I | CGTCTC | 1 cut(s) | 589 |
| FaeI | CATG | 4 cut(s) | 282, 642, 881, 926 |
| FaqI | GGGAC | 1 cut(s) | 822 |
| FatI | CATG | 4 cut(s) | 278, 638, 877, 922 |
| FblI | GTMKAC | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 2 cut(s) | 493, 629 |
| Fsp4HI | GCNGC | 2 cut(s) | 493, 629 |
| FspBI | CTAG | 2 cut(s) | 614, 812 |
| GluI | GCNGC | 2 cut(s) | 493, 629 |
| GsuI | CTGGAG | 1 cut(s) | 548 |
| HaeIII | GGCC | 4 cut(s) | 42, 407, 643, 675 |
| HapII | CCGG | 5 cut(s) | 337, 404, 408, 429, 797 |
| Hin1II | CATG | 4 cut(s) | 282, 642, 881, 926 |
| HindIII | AAGCTT | 1 cut(s) | 1026 |
| HinfI | GANTC | 4 cut(s) | 189, 545, 653, 1018 |
| HpaII | CCGG | 5 cut(s) | 337, 404, 408, 429, 797 |
| HphI | GGTGA | 3 cut(s) | 154, 285, 709 |
| Hpy166II | GTNNAC | 4 cut(s) | 260, 684, 720, 872 |
| Hpy188I | TCNGA | 3 cut(s) | 550, 558, 739 |
| Hpy8I | GTNNAC | 4 cut(s) | 260, 684, 720, 872 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 527 |
| HpyAV | CCTTC | 2 cut(s) | 694, 973 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 914 |
| HpyCH4IV | ACGT | 1 cut(s) | 29 |
| HpyCH4V | TGCA | 7 cut(s) | 159, 278, 290, 350, 631, 684, 938 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 681 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 661 |
| HpySE526I | ACGT | 1 cut(s) | 29 |
| Hsp92II | CATG | 4 cut(s) | 282, 642, 881, 926 |
| Kpn2I | TCCGGA | 1 cut(s) | 336 |
| Kzo9I | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| LguI | GCTCTTC | 1 cut(s) | 959 |
| LmnI | GCTCC | 1 cut(s) | 567 |
| Lsp1109I | GCAGC | 2 cut(s) | 504, 615 |
| LweI | GCATC | 4 cut(s) | 265, 299, 489, 517 |
| MaeI | CTAG | 2 cut(s) | 614, 812 |
| MaeII | ACGT | 1 cut(s) | 29 |
| MaeIII | GTNAC | 4 cut(s) | 25, 129, 820, 1009 |
| MalI | GATC | 5 cut(s) | 151, 516, 693, 741, 992 |
| MboI | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| MboII | GAAGA | 8 cut(s) | 589, 677, 910, 920, 964, 976, 988, 1013 |
| MfeI | CAATTG | 2 cut(s) | 180, 369 |
| MflI | RGATCY | 3 cut(s) | 514, 691, 739 |
| MhlI | GDGCHC | 1 cut(s) | 686 |
| MlsI | TGGCCA | 1 cut(s) | 42 |
| MluCI | AATT | 6 cut(s) | 49, 180, 264, 369, 376, 608 |
| MluNI | TGGCCA | 1 cut(s) | 42 |
| MlyI | GAGTC | 2 cut(s) | 198, 554 |
| MmeI | TCCRAC | 2 cut(s) | 224, 486 |
| Mox20I | TGGCCA | 1 cut(s) | 42 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MroI | TCCGGA | 1 cut(s) | 336 |
| MscI | TGGCCA | 1 cut(s) | 42 |
| MseI | TTAA | 3 cut(s) | 68, 168, 884 |
| MslI | CAYNNNNRTG | 1 cut(s) | 525 |
| Msp20I | TGGCCA | 1 cut(s) | 42 |
| MspI | CCGG | 5 cut(s) | 337, 404, 408, 429, 797 |
| MspR9I | CCNGG | 2 cut(s) | 866, 971 |
| MunI | CAATTG | 2 cut(s) | 180, 369 |
| MvaI | CCWGG | 2 cut(s) | 866, 971 |
| MvnI | CGCG | 1 cut(s) | 362 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 681 |
| NdeII | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| NlaIII | CATG | 4 cut(s) | 282, 642, 881, 926 |
| NlaIV | GGNNCC | 1 cut(s) | 516 |
| NmuCI | GTSAC | 3 cut(s) | 129, 820, 1009 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| NspI | RCATGY | 1 cut(s) | 282 |
| PaeI | GCATGC | 1 cut(s) | 282 |
| PagI | TCATGA | 1 cut(s) | 922 |
| PciSI | GCTCTTC | 1 cut(s) | 959 |
| PfeI | GAWTC | 2 cut(s) | 653, 1018 |
| PkrI | GCNGC | 2 cut(s) | 494, 630 |
| PleI | GAGTC | 2 cut(s) | 197, 553 |
| PpsI | GAGTC | 2 cut(s) | 197, 553 |
| Psp6I | CCWGG | 2 cut(s) | 864, 969 |
| PspGI | CCWGG | 2 cut(s) | 864, 969 |
| PspN4I | GGNNCC | 1 cut(s) | 516 |
| PspPI | GGNCC | 1 cut(s) | 999 |
| PsuI | RGATCY | 3 cut(s) | 514, 691, 739 |
| RseI | CAYNNNNRTG | 1 cut(s) | 525 |
| SapI | GCTCTTC | 1 cut(s) | 959 |
| SaqAI | TTAA | 3 cut(s) | 68, 168, 884 |
| SatI | GCNGC | 2 cut(s) | 493, 629 |
| Sau3AI | GATC | 5 cut(s) | 149, 514, 691, 739, 990 |
| Sau96I | GGNCC | 1 cut(s) | 999 |
| SchI | GAGTC | 2 cut(s) | 198, 554 |
| ScrFI | CCNGG | 2 cut(s) | 866, 971 |
| SduI | GDGCHC | 1 cut(s) | 686 |
| SfaNI | GCATC | 4 cut(s) | 265, 299, 489, 517 |
| SinI | GGWCC | 1 cut(s) | 999 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 525 |
| SmlI | CTYRAG | 1 cut(s) | 842 |
| SmoI | CTYRAG | 1 cut(s) | 842 |
| SpeI | ACTAGT | 1 cut(s) | 811 |
| SphI | GCATGC | 1 cut(s) | 282 |
| Sse9I | AATT | 6 cut(s) | 49, 180, 264, 369, 376, 608 |
| SsiI | CCGC | 7 cut(s) | 140, 248, 360, 426, 470, 490, 657 |
| SspMI | CTAG | 2 cut(s) | 614, 812 |
| StyD4I | CCNGG | 2 cut(s) | 864, 969 |
| TaaI | ACNGT | 2 cut(s) | 109, 914 |
| TaiI | ACGT | 1 cut(s) | 32 |
| TaqI | TCGA | 4 cut(s) | 187, 393, 449, 540 |
| TasI | AATT | 6 cut(s) | 49, 180, 264, 369, 376, 608 |
| TfiI | GAWTC | 2 cut(s) | 653, 1018 |
| Tru1I | TTAA | 3 cut(s) | 68, 168, 884 |
| Tru9I | TTAA | 3 cut(s) | 68, 168, 884 |
| TscAI | CASTG | 1 cut(s) | 1009 |
| TseFI | GTSAC | 3 cut(s) | 129, 820, 1009 |
| TseI | GCWGC | 2 cut(s) | 492, 628 |
| Tsp45I | GTSAC | 3 cut(s) | 129, 820, 1009 |
| TspDTI | ATGAA | 4 cut(s) | 621, 866, 971, 1031 |
| TspGWI | ACGGA | 1 cut(s) | 839 |
| TspRI | CASTG | 1 cut(s) | 1009 |
| VneI | GTGCAC | 1 cut(s) | 682 |
| VpaK11BI | GGWCC | 1 cut(s) | 999 |
| XapI | RAATTY | 2 cut(s) | 376, 608 |
| XbaI | TCTAGA | 1 cut(s) | 613 |
| XceI | RCATGY | 1 cut(s) | 282 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 727 |
| XmiI | GTMKAC | 1 cut(s) | 259 |
| XspI | CTAG | 2 cut(s) | 614, 812 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |