Rh7DG111300

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000145
Physical Location & Seq
Reverse (-)
9498041 .. 9502344
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG111300.1

Sequence Viewer

Length: 1044 bp
ATGCAGATCGACCAGTCGGCCCCTTCCTGCAACGAGACCTCTTTCTCTGCCCTATTCCATGAAAAACGAGAAAAGAAGTTGCAAGATGCTTGGCCGATGCTGGAATCGTCTTTCGAAGAGTTTGGCGTTTCATGTGCACTGAATCTGGCTGAGCGTTCCGTGATAGTCTCAACAACCGGAAGGACTAAGGGCCGGAATTCTTTTGATAAGGCTACACGCATCGTTGAACTTTTGGCAACAACTCATGTTCCACCATATCTGGCAATAGAAATACTAAATGGTGATCGGAAACATATCCTCATCAAAACTGGGAATCAACAAGGTGGGCTTTGCTCCATATATGGGATCAAGAAGGATCAATTTGTTAAACAACGGGAATGTCTTGCCTGCTCCCTAGAGGCACTTGGAGCACTGACATTTTGTTATCTTTTTCTTAATGAAGACACTGTTGCTGCAGTGGGAGACCCTCTAGCTTTAATGGCAATCAGGAAGCTTGTCGTAGGCTGCATTGTTAACAATGCGGATCCTGCAACAACTATCAGTGAGGTTAAAACTGTCTTGAGGAGGAGACAAGGAGTGGAAAATCTTCAACACCCAAATGTCGATTACTTGAGAATGGAGAACTCTGGCCCTTCCTTGGATCTGTATGGCATGCTTGAAGTAACCTCTTTCTCTATGACCTGCTATATAGGCCGAGAAAAAGTGGTGCAAGAAGCTTTGCCATTTTTGCAATCATTTTTAGAAGAGTATGGCATTTCATGCACTCTGAATATGGCTGAGCGTTCCATGACACTTTCAACTACCAGAAGAACCAAGGATCCTGATGTTATGGACAAGGCTGTCATTCTTGTTGAGCTTCTGGCAAGAACTAGTATTCCGGCATCTAAGGCAATAGAAATCCTGCACAGCCGCCTGCAACATGAAGTCATCAAGACTGGGTTTCAAGAAGGTGGACTTTGCTCTAAATATGGAATCAAGAAGGAGCGATTTGTTAAAAACAAGGACCGATTCAAGTGCTACTTGCAGGTGCACAAAGTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.85

Weight (kDa)

8.41

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 14 - 80 2.4e-07 Krr1 KH1 domain
KH_KRR1_2nd PF21800 117 - 182 1.7e-08 KRR1 small subunit processome component, second KH domain
KH_KRR1_1st PF17903 232 - 301 1e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
AasI GACNNNNNNGTC 1 cut(s) 839
Acc36I ACCTGC 2 cut(s) 689, 1015
AciI CCGC 2 cut(s) 521, 910
AclWI GGATC 7 cut(s) 353, 363, 518, 531, 648, 812, 825
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 342, 637
AgsI TTSAA 6 cut(s) 227, 590, 659, 798, 944, 1012
AhlI ACTAGT 1 cut(s) 869
AloI GAACNNNNNNTCC 4 cut(s) 802, 834, 859, 891
AluBI AGCT 4 cut(s) 473, 493, 716, 856
AluI AGCT 4 cut(s) 473, 493, 716, 856
Alw21I GWGCWC 3 cut(s) 139, 412, 1032
Alw26I GTCTC 4 cut(s) 29, 172, 456, 562
Alw44I GTGCAC 2 cut(s) 135, 1028
AlwI GGATC 7 cut(s) 353, 363, 518, 531, 648, 812, 825
AoxI GGCC 5 cut(s) 18, 92, 190, 628, 691
ApaLI GTGCAC 2 cut(s) 135, 1028
ApeKI GCWGC 2 cut(s) 452, 504
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 4 cut(s) 19, 190, 629, 1003
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 1003
BaeGI GKGCMC 2 cut(s) 139, 1032
BamHI GGATCC 2 cut(s) 523, 817
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 3 cut(s) 139, 412, 1032
BbvI GCAGC 2 cut(s) 439, 491
BcgI CGANNNNNNTGC 2 cut(s) 996, 1030
BcoDI GTCTC 4 cut(s) 29, 172, 456, 562
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 3 cut(s) 395, 470, 870
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 2 cut(s) 689, 1015
BisI GCNGC 3 cut(s) 453, 505, 910
BlpI GCTNAGC 2 cut(s) 150, 777
BlsI GCNGC 3 cut(s) 454, 506, 911
Bme18I GGWCC 1 cut(s) 1003
BmgT120I GGNCC 4 cut(s) 19, 190, 629, 1003
BmiI GGNNCC 3 cut(s) 21, 525, 819
BmrI ACTGGG 2 cut(s) 318, 945
BmsI GCATC 4 cut(s) 76, 87, 228, 890
BmuI ACTGGG 2 cut(s) 318, 945
BpiI GAAGAC 1 cut(s) 447
Bpu1102I GCTNAGC 2 cut(s) 150, 777
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 580, 631
BsaI GGTCTC 2 cut(s) 29, 456
BsaJI CCNNGG 2 cut(s) 636, 813
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 637
Bse1I ACTGG 3 cut(s) 13, 313, 940
BseDI CCNNGG 2 cut(s) 636, 813
BseLI CCNNNNNNNGG 2 cut(s) 342, 637
BseMII CTCAG 2 cut(s) 141, 768
BseNI ACTGG 3 cut(s) 13, 313, 940
BseRI GAGGAG 2 cut(s) 577, 580
BseSI GKGCMC 2 cut(s) 139, 1032
BseXI GCAGC 2 cut(s) 439, 491
BsgI GTGCAG 1 cut(s) 887
BshFI GGCC 5 cut(s) 20, 94, 192, 630, 693
BsiHKAI GWGCWC 3 cut(s) 139, 412, 1032
BsiSI CCGG 3 cut(s) 177, 193, 878
BslI CCNNNNNNNGG 2 cut(s) 342, 637
BsmAI GTCTC 4 cut(s) 29, 172, 456, 562
BsnI GGCC 5 cut(s) 20, 94, 192, 630, 693
Bso31I GGTCTC 2 cut(s) 29, 456
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 3 cut(s) 139, 412, 1032
Bsp143I GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
Bsp1720I GCTNAGC 2 cut(s) 150, 777
BspACI CCGC 2 cut(s) 521, 910
BspANI GGCC 5 cut(s) 20, 94, 192, 630, 693
BspCNI CTCAG 2 cut(s) 142, 769
BspLI GGNNCC 3 cut(s) 21, 525, 819
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 2 cut(s) 689, 1015
BspPI GGATC 7 cut(s) 353, 363, 518, 531, 648, 812, 825
BspT104I TTCGAA 1 cut(s) 114
BspTNI GGTCTC 2 cut(s) 29, 456
BsrI ACTGG 3 cut(s) 13, 313, 940
BssECI CCNNGG 2 cut(s) 636, 813
BssMI GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
BssT1I CCWWGG 2 cut(s) 636, 813
Bst4CI ACNGT 2 cut(s) 448, 556
Bst6I CTCTTC 2 cut(s) 111, 738
BstAPI GCANNNNNTGC 1 cut(s) 759
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 388, 653, 914
BstDEI CTNAG 4 cut(s) 150, 186, 777, 885
BstKTI GATC 7 cut(s) 9, 286, 348, 358, 526, 643, 820
BstMAI GTCTC 4 cut(s) 29, 172, 456, 562
BstMBI GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
BstMWI GCNNNNNNNGC 7 cut(s) 407, 479, 527, 690, 727, 759, 887
BstNSI RCATGY 1 cut(s) 655
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 139, 1032
BstV1I GCAGC 2 cut(s) 439, 491
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 3 cut(s) 523, 640, 817
BstYI RGATCY 3 cut(s) 523, 640, 817
BsuRI GGCC 5 cut(s) 20, 94, 192, 630, 693
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 5 cut(s) 137, 410, 444, 462, 547
BveI ACCTGC 2 cut(s) 689, 1015
Cac8I GCNNGC 3 cut(s) 388, 653, 914
Cfr13I GGNCC 4 cut(s) 19, 190, 629, 1003
CviAII CATG 7 cut(s) 59, 132, 245, 652, 759, 787, 920
DdeI CTNAG 4 cut(s) 150, 186, 777, 885
DpnI GATC 7 cut(s) 8, 285, 347, 357, 525, 642, 819
DpnII GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
DrdI GACNNNNNNGTC 1 cut(s) 839
DseDI GACNNNNNNGTC 1 cut(s) 839
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 111, 738
EarI CTCTTC 2 cut(s) 111, 738
Eco130I CCWWGG 2 cut(s) 636, 813
Eco31I GGTCTC 2 cut(s) 29, 456
Eco47I GGWCC 1 cut(s) 1003
EcoRI GAATTC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 636, 813
ErhI CCWWGG 2 cut(s) 636, 813
FaeI CATG 7 cut(s) 62, 135, 248, 655, 762, 790, 923
FalI AAGNNNNNCTT 6 cut(s) 312, 344, 939, 971, 1004, 1036
FatI CATG 7 cut(s) 58, 131, 244, 651, 758, 786, 919
Fnu4HI GCNGC 3 cut(s) 453, 505, 910
Fsp4HI GCNGC 3 cut(s) 453, 505, 910
FspBI CTAG 3 cut(s) 395, 470, 870
GluI GCNGC 3 cut(s) 453, 505, 910
HaeIII GGCC 5 cut(s) 20, 94, 192, 630, 693
HapII CCGG 3 cut(s) 177, 193, 878
Hin1II CATG 7 cut(s) 62, 135, 248, 655, 762, 790, 923
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 2 cut(s) 491, 714
HinfI GANTC 5 cut(s) 104, 142, 313, 972, 1008
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 3 cut(s) 177, 193, 878
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 4 cut(s) 137, 514, 953, 1030
Hpy188I TCNGA 2 cut(s) 288, 768
Hpy188III TCNNGA 7 cut(s) 349, 487, 559, 821, 931, 944, 976
Hpy8I GTNNAC 4 cut(s) 137, 514, 953, 1030
HpyAV CCTTC 6 cut(s) 33, 174, 346, 642, 941, 973
HpyCH4III ACNGT 2 cut(s) 448, 556
HpyF10VI GCNNNNNNNGC 7 cut(s) 407, 479, 527, 690, 727, 759, 887
HpyF3I CTNAG 4 cut(s) 150, 186, 777, 885
Hsp92II CATG 7 cut(s) 62, 135, 248, 655, 762, 790, 923
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
LmnI GCTCC 4 cut(s) 338, 395, 407, 982
Lsp1109I GCAGC 2 cut(s) 439, 491
LweI GCATC 4 cut(s) 76, 87, 228, 890
MaeI CTAG 3 cut(s) 395, 470, 870
MaeIII GTNAC 1 cut(s) 661
MalI GATC 7 cut(s) 8, 285, 347, 357, 525, 642, 819
MboI GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
MboII GAAGA 5 cut(s) 128, 452, 578, 755, 819
MflI RGATCY 3 cut(s) 523, 640, 817
MhlI GDGCHC 3 cut(s) 139, 412, 1032
MluCI AATT 2 cut(s) 196, 359
MnlI CCTC 8 cut(s) 49, 308, 391, 477, 538, 555, 558, 676
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 6 cut(s) 366, 435, 476, 513, 549, 993
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 3 cut(s) 177, 193, 878
MwoI GCNNNNNNNGC 7 cut(s) 407, 479, 527, 690, 727, 759, 887
NdeII GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
NlaIII CATG 7 cut(s) 62, 135, 248, 655, 762, 790, 923
NlaIV GGNNCC 3 cut(s) 21, 525, 819
NmeAIII GCCGAG 1 cut(s) 719
NspI RCATGY 1 cut(s) 655
NspV TTCGAA 1 cut(s) 114
PaeI GCATGC 1 cut(s) 655
PaqCI CACCTGC 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 5 cut(s) 104, 142, 313, 972, 1008
PkrI GCNGC 3 cut(s) 454, 506, 911
PspN4I GGNNCC 3 cut(s) 21, 525, 819
PspPI GGNCC 4 cut(s) 19, 190, 629, 1003
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 523, 640, 817
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 6 cut(s) 366, 435, 476, 513, 549, 993
SatI GCNGC 3 cut(s) 453, 505, 910
Sau3AI GATC 7 cut(s) 6, 283, 345, 355, 523, 640, 817
Sau96I GGNCC 4 cut(s) 19, 190, 629, 1003
SduI GDGCHC 3 cut(s) 139, 412, 1032
SfaNI GCATC 4 cut(s) 76, 87, 228, 890
SfcI CTRYAG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 1003
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 559, 610
SmoI CTYRAG 2 cut(s) 559, 610
SpeI ACTAGT 1 cut(s) 869
SphI GCATGC 1 cut(s) 655
Sse9I AATT 2 cut(s) 196, 359
SsiI CCGC 2 cut(s) 521, 910
SspMI CTAG 3 cut(s) 395, 470, 870
StyI CCWWGG 2 cut(s) 636, 813
TaaI ACNGT 2 cut(s) 448, 556
TaqI TCGA 3 cut(s) 9, 114, 603
TaqII GACCGA 1 cut(s) 1020
TasI AATT 2 cut(s) 196, 359
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 5 cut(s) 104, 142, 313, 972, 1008
Tru1I TTAA 6 cut(s) 366, 435, 476, 513, 549, 993
Tru9I TTAA 6 cut(s) 366, 435, 476, 513, 549, 993
TscAI CASTG 5 cut(s) 144, 417, 451, 462, 547
TseI GCWGC 2 cut(s) 452, 504
TspDTI ATGAA 5 cut(s) 75, 120, 453, 747, 936
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 5 cut(s) 144, 417, 451, 462, 547
VneI GTGCAC 2 cut(s) 135, 1028
VpaK11BI GGWCC 1 cut(s) 1003
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 3 cut(s) 395, 470, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.