RLG00000003688

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000145
Physical Location & Seq
Reverse (-)
51669004 .. 51669459
456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003688

Sequence Viewer

Length: 456 bp
ATGACAAGTTTGCAAGACATTTGGCCGATTGTGGAATTGTCTCTGCTAGAAGAGTATGGCATTGCATGCGCTTTGAATCTGCCTGAACGTTGCACGACAGTGTCAACAACCAGAAGGACTGAGGACCGAAATTATTTTGAGATGGCGAAGCGTCTCGTTGAACTTTTGACAACAACTAACGTTCCACCACATATGGCAATAGAAACACTAGGGTGTCATATCCTCATCAAGATCGGGAATCAAGAAGGTGGACTTTGCTCCCAATTTGGGATCAAGAATGAACAATTTGTTAAGCAGCGGGAATGTCTTGCCTGCTCCCTAGAGGCACTTACAGCATTGACGAGTTGTAAACTTTTTCTCAACGACAACACTCTTAATTGCTGCTGTGGGTGTATCTCGGTCGTTCTTGCTAAGTTGCTAGTCAGGAAGATTGTCGTCGACTGCATTGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

5.7

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 298
AclI AACGTT 2 cut(s) 88, 180
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 76, 161
AleI CACNNNNGTG 2 cut(s) 98, 211
Alw26I GTCTC 2 cut(s) 45, 158
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 295, 381
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 307, 368
BccI CCATC 1 cut(s) 136
BcgI CGANNNNNNTGC 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 45, 158
BfaI CTAG 4 cut(s) 47, 209, 320, 419
BisI GCNGC 2 cut(s) 296, 382
BlsI GCNGC 2 cut(s) 297, 383
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse3DI GCAATG 2 cut(s) 60, 444
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 2 cut(s) 60, 444
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 307, 368
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 45, 158
BsmBI CGTCTC 1 cut(s) 158
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 231, 270
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 60, 444
BssMI GATC 2 cut(s) 231, 270
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 67, 313
BstDEI CTNAG 2 cut(s) 120, 411
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 234, 273
BstMAI GTCTC 2 cut(s) 45, 158
BstMBI GATC 2 cut(s) 231, 270
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 2 cut(s) 66, 332
BstNSI RCATGY 2 cut(s) 69, 453
BstV1I GCAGC 2 cut(s) 307, 368
BsuRI GGCC 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 67, 313
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 140
CviAII CATG 2 cut(s) 66, 450
CviJI RGCY 1 cut(s) 25
CviKI_1 RGCY 1 cut(s) 25
DdeI CTNAG 2 cut(s) 120, 411
DpnI GATC 2 cut(s) 233, 272
DpnII GATC 2 cut(s) 231, 270
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 2 cut(s) 69, 453
FaiI YATR 6 cut(s) 57, 67, 192, 194, 219, 451
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 2 cut(s) 65, 449
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 296, 382
Fsp4HI GCNGC 2 cut(s) 296, 382
FspBI CTAG 4 cut(s) 47, 209, 320, 419
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 296, 382
HaeIII GGCC 1 cut(s) 25
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 71
Hin1II CATG 2 cut(s) 69, 453
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 2 cut(s) 105, 439
HindII GTYRAC 2 cut(s) 105, 439
HinfI GANTC 2 cut(s) 76, 238
Hpy166II GTNNAC 4 cut(s) 105, 251, 350, 439
Hpy188III TCNNGA 5 cut(s) 229, 235, 242, 274, 424
Hpy8I GTNNAC 4 cut(s) 105, 251, 350, 439
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 108, 239
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 88, 180
HpyCH4V TGCA 5 cut(s) 13, 65, 93, 444, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 332
HpyF3I CTNAG 2 cut(s) 120, 411
HpySE526I ACGT 2 cut(s) 88, 180
Hsp92II CATG 2 cut(s) 69, 453
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 231, 270
LmnI GCTCC 2 cut(s) 263, 320
LpnPI CCDG 4 cut(s) 96, 124, 325, 409
Lsp1109I GCAGC 2 cut(s) 307, 368
MaeI CTAG 4 cut(s) 47, 209, 320, 419
MaeII ACGT 2 cut(s) 88, 180
MalI GATC 2 cut(s) 233, 272
MboI GATC 2 cut(s) 231, 270
MboII GAAGA 2 cut(s) 62, 439
MluCI AATT 5 cut(s) 35, 130, 263, 284, 376
MnlI CCTC 3 cut(s) 115, 233, 316
MseI TTAA 3 cut(s) 291, 375, 454
MslI CAYNNNNRTG 2 cut(s) 98, 211
MspA1I CMGCKG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 66, 332
NdeI CATATG 1 cut(s) 192
NdeII GATC 2 cut(s) 231, 270
NlaIII CATG 2 cut(s) 69, 453
NspI RCATGY 2 cut(s) 69, 453
OliI CACNNNNGTG 2 cut(s) 98, 211
PaeI GCATGC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 76, 238
PflFI GACNNNGTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 297, 383
Psp1406I AACGTT 2 cut(s) 88, 180
PspPI GGNCC 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 98, 211
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 291, 375, 454
SatI GCNGC 2 cut(s) 296, 382
Sau3AI GATC 2 cut(s) 231, 270
Sau96I GGNCC 1 cut(s) 124
SetI ASST 3 cut(s) 91, 183, 250
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 2 cut(s) 98, 211
SphI GCATGC 1 cut(s) 69
Sse9I AATT 5 cut(s) 35, 130, 263, 284, 376
SsiI CCGC 1 cut(s) 298
SspMI CTAG 4 cut(s) 47, 209, 320, 419
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 91, 183
TaqI TCGA 1 cut(s) 438
TaqII GACCGA 2 cut(s) 141, 388
TasI AATT 5 cut(s) 35, 130, 263, 284, 376
TfiI GAWTC 2 cut(s) 76, 238
Tru1I TTAA 3 cut(s) 291, 375, 454
Tru9I TTAA 3 cut(s) 291, 375, 454
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 295, 381
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 2 cut(s) 69, 453
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 4 cut(s) 47, 209, 320, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.