RchiOBHm_Chr7g0210441

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000145
Physical Location & Seq
Reverse (-)
28078523 .. 28080391
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18831

Sequence Viewer

Length: 1869 bp
ATGGTTGTTGGGGAGCCTGCTACCCGCGGGCCTATCCCGATGTCGAACAGCAGGTCTTTCCGTCCGATCTGCAATCAAAACCGAGCAAAGTTGGCAGAAGCTTGGCCGATGGTCAAATCGTCATTGGAAGAACTCGGGTATTCATGCACAATGAGTACGGTTGATTCCACAGTCGTAGTGGTGTCACCCTGGTCTACAGACCCAGATATGCGCAAGGCTGTTTATCTTTTCAAGCTTTTGTTCAAGACTCCTGTTCCAGCACCTCTGGCACTAGAGTTGGCACTCCATGGCAGGCAACATGATTTCATCAAGATTGGCACTCAAAAGGGTGGGCTATGCAAAAAATATGGGATCAAGAAGGAGAAATTTGATAAACTGCGGATACGTCTCAAACGCTCCTTAAAGGAACTTGGTGATATGACCCACTGTACTCTTTTTCTGAACAAGAGCACTCTTACTGCCGTGGGTCCATCTCCAAGATTACACTGGGTCAGGAAGGTTTTGAAATTCTGCGCTATTGAGAAGTTGAGTCCTGCACATGTTATTAGGGTTTTCAACCGGAAGCTGAAACGAAAAACAGCGATGATGAAGAACAGCGATACAGTGATGATGGAGAAAAGCGATTTCGGCATCCCTGAGCAGCCAAAAGTCAATCAGGAAGTTGGCGACCCTGTTCCGATGTTGAACAGCAGCGGGTCTTTCCGTCCGATTTCCAACACAAATCGAGCAAAGTTGACAGAAGCTTGGCCGATGGTCAATTTGTCCTTGGAAGAACTCGGGTATTCATGCGCAATGAGTACGGTTGATTCCACAGTCTTAGTGGTACCACCCTGTTCTACAGATCCAGATATCATGCGCAAGGCTGATTATCTTTTCAAACTTTTGTTGAAGACTCCTGTTCCGGCACCGCTGGCGATAGAGTTGGCGCTCCATGGCAGGCAACATGATCTCATCAAGCTTGGCACTCAAAAGGGTGGGATATGCAAAAAATATGGGATCAACAAGGGGAAAATTGATAAACTGCGGAGACGTCTCGAACACTCCTTAAAGGAACTTGGTGATCTGACCCATTGTACTCTTTTTCTGAACAAAAATACTCTTACTGCTGTGGGTCCATCTCCGAGATTACACTTGGTCAGGAAGGTTTTGGAAATCTGTATAAAAATAAAGATGAGTCCTGCAGATGTTATTAGCACGTTGATATGCCAGTATGATCAAAAAATTTCATTTGTTCGGGATCTTGATGTCTCTAATGTCAAGAAGACTGGCCATTTGGTGAACAAAGATGGTGCAGCTGAAGTGACATTGCCCTTTCTTGAAAGACGAGCAACAAGGATGGAAGGAGCTTTGTCAATGGTGGAGTCATCTTTTGAGAAATATGGCATTTCTTTCACACTGAATCTGATTAAGCGAACCGTGACTATCTCAACAATTGGAGCGACCAAAGAGTACCCGGATGCTTTTGAGAAAGCTAGGCATCTTTTGCAACTTTTGACAACAACTAATGTCCCGCCATCTCGGGCTGTAGAATTAGCGATGAATGGCATGAAGCATGAATTCATCGAGATCGGGTTTCAAGAAGGTGGGCTTTGCTCATTGTATGGAATCAAGAAGGAACAATATGTTAAACGGCGTAAATGGCTCATTCGTTCTGCGAAGCGGATTCGAGAATTCACGGAGTGTGATATCTACTGCACAGGAGACACTATTACTGGTGTGAGTCCCTCTATTGTGGGATTGAGTATGTTCAGGAGGATTGTGTTGACCTGCATTGTTGAAGATACGGATCCTGCACACCGTATAAGGAAATTTTTACGCTCAGAGTCGAAAAGGAAACTGAAGAAGATTATCAAGCGTTTGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

622

Amino Acids

70.05

Weight (kDa)

9.81

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 537 - 606 9.5e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1033
Acc16I TGCGCA 3 cut(s) 212, 790, 857
Acc36I ACCTGC 2 cut(s) 42, 1775
Acc65I GGTACC 1 cut(s) 823
AccB1I GGYRCC 2 cut(s) 823, 904
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 27
AciI CCGC 8 cut(s) 25, 27, 379, 693, 908, 1024, 1511, 1660
AclWI GGATC 6 cut(s) 359, 836, 1004, 1245, 1781, 1794
AcoI YGGCCR 3 cut(s) 104, 746, 1267
AcsI RAATTY 6 cut(s) 365, 506, 1221, 1556, 1670, 1808
AcuI CTGAAG 2 cut(s) 1317, 1859
AcyI GRCGYC 1 cut(s) 1030
AdeI CACNNNGTG 1 cut(s) 1680
AfaI GTAC 6 cut(s) 157, 430, 799, 825, 1075, 1451
AflIII ACRYGT 1 cut(s) 538
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 8 cut(s) 101, 235, 565, 743, 958, 1295, 1346, 1472
AluI AGCT 8 cut(s) 101, 235, 565, 743, 958, 1295, 1346, 1472
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 5 cut(s) 392, 1021, 1037, 1252, 1695
AlwI GGATC 6 cut(s) 359, 836, 1004, 1245, 1781, 1794
Ama87I CYCGRG 3 cut(s) 134, 776, 1518
AoxI GGCC 4 cut(s) 29, 104, 746, 1267
ApeKI GCWGC 3 cut(s) 640, 690, 1292
ApoI RAATTY 6 cut(s) 365, 506, 1221, 1556, 1670, 1808
ArsI GACNNNNNNTTYG 4 cut(s) 38, 70, 1255, 1287
Asp718I GGTACC 1 cut(s) 823
AspLEI GCGC 5 cut(s) 213, 515, 791, 858, 928
AspS9I GGNCC 3 cut(s) 29, 467, 1112
AsuC2I CCSGG 1 cut(s) 1454
AsuHPI GGTGA 4 cut(s) 177, 425, 1070, 1288
AvaI CYCGRG 3 cut(s) 134, 776, 1518
AvaII GGWCC 2 cut(s) 467, 1112
BalI TGGCCA 1 cut(s) 1269
BamHI GGATCC 1 cut(s) 1786
BanI GGYRCC 2 cut(s) 823, 904
BbsI GAAGAC 2 cut(s) 896, 1268
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 652, 702, 1304
BccI CCATC 8 cut(s) 103, 478, 604, 745, 1123, 1280, 1330, 1522
BceAI ACGGC 2 cut(s) 446, 1646
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 1454
BcoDI GTCTC 5 cut(s) 392, 1021, 1037, 1252, 1695
BfaI CTAG 2 cut(s) 272, 1473
BfmI CTRYAG 4 cut(s) 195, 837, 1179, 1524
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 2 cut(s) 42, 1775
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 3 cut(s) 641, 691, 1293
BlsI GCNGC 3 cut(s) 642, 692, 1294
Bme1390I CCNGG 2 cut(s) 190, 1454
Bme18I GGWCC 2 cut(s) 467, 1112
BmeT110I CYCGRG 3 cut(s) 134, 776, 1518
BmgT120I GGNCC 3 cut(s) 29, 467, 1112
BmiI GGNNCC 6 cut(s) 15, 468, 825, 906, 1113, 1788
BmrFI CCNGG 2 cut(s) 190, 1454
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 3 cut(s) 639, 1447, 1486
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 2 cut(s) 896, 1268
Bpu10I CCTNAGC 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 1454
BsaBI GATNNNNATC 1 cut(s) 1785
BsaHI GRCGYC 1 cut(s) 1030
BsaJI CCNNGG 6 cut(s) 25, 188, 286, 462, 765, 931
BsaWI WCCGGW 1 cut(s) 558
Bse1I ACTGG 4 cut(s) 491, 1207, 1270, 1717
Bse3DI GCAATG 2 cut(s) 798, 1304
Bse8I GATNNNNATC 1 cut(s) 1785
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 6 cut(s) 25, 188, 286, 462, 765, 931
BseGI GGATG 3 cut(s) 630, 1341, 1462
BseJI GATNNNNATC 1 cut(s) 1785
BseMI GCAATG 2 cut(s) 798, 1304
BseMII CTCAG 2 cut(s) 627, 1833
BseNI ACTGG 4 cut(s) 491, 1207, 1270, 1717
BseXI GCAGC 3 cut(s) 652, 702, 1304
BsgI GTGCAG 4 cut(s) 519, 1311, 1678, 1776
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 4 cut(s) 31, 106, 748, 1269
BshNI GGYRCC 2 cut(s) 823, 904
BsiHKAI GWGCWC 1 cut(s) 452
BsiHKCI CYCGRG 3 cut(s) 134, 776, 1518
BsiSI CCGG 3 cut(s) 559, 902, 1454
BslFI GGGAC 2 cut(s) 1493, 1707
BsmAI GTCTC 5 cut(s) 392, 1021, 1037, 1252, 1695
BsmBI CGTCTC 3 cut(s) 392, 1021, 1037
BsmFI GGGAC 2 cut(s) 1493, 1707
BsnI GGCC 4 cut(s) 31, 106, 748, 1269
BsoBI CYCGRG 3 cut(s) 134, 776, 1518
Bsp1286I GDGCHC 1 cut(s) 452
Bsp19I CCATGG 2 cut(s) 286, 931
BspACI CCGC 8 cut(s) 25, 27, 379, 693, 908, 1024, 1511, 1660
BspANI GGCC 4 cut(s) 31, 106, 748, 1269
BspCNI CTCAG 2 cut(s) 628, 1832
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 6 cut(s) 15, 468, 825, 906, 1113, 1788
BspMAI CTGCAG 1 cut(s) 1183
BspMI ACCTGC 2 cut(s) 42, 1775
BspPI GGATC 6 cut(s) 359, 836, 1004, 1245, 1781, 1794
BspT107I GGYRCC 2 cut(s) 823, 904
BsrDI GCAATG 2 cut(s) 798, 1304
BsrI ACTGG 4 cut(s) 491, 1207, 1270, 1717
BssECI CCNNGG 6 cut(s) 25, 188, 286, 462, 765, 931
BssNI GRCGYC 1 cut(s) 1030
BssT1I CCWWGG 3 cut(s) 286, 765, 931
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 8 cut(s) 160, 172, 428, 604, 802, 814, 1417, 1799
BstACI GRCGYC 1 cut(s) 1030
BstAPI GCANNNNNTGC 1 cut(s) 1483
BstC8I GCNNGC 5 cut(s) 18, 29, 293, 912, 938
BstDEI CTNAG 3 cut(s) 636, 817, 1819
BstDSI CCRYGG 4 cut(s) 25, 286, 462, 931
BstF5I GGATG 3 cut(s) 630, 1341, 1462
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 5 cut(s) 213, 515, 791, 858, 928
BstMAI GTCTC 5 cut(s) 392, 1021, 1037, 1252, 1695
BstMWI GCNNNNNNNGC 6 cut(s) 92, 266, 627, 911, 1483, 1639
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 188, 1452
BstSFI CTRYAG 4 cut(s) 195, 837, 1179, 1524
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 652, 702, 1304
BstV2I GAAGAC 2 cut(s) 896, 1268
BstX2I RGATCY 3 cut(s) 841, 1237, 1786
BstYI RGATCY 3 cut(s) 841, 1237, 1786
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 4 cut(s) 31, 106, 748, 1269
BtgI CCRYGG 4 cut(s) 25, 286, 462, 931
BtgZI GCGATG 2 cut(s) 596, 1550
BtsCI GGATG 3 cut(s) 630, 1341, 1462
BtsIMutI CAGTG 4 cut(s) 424, 484, 609, 1394
BveI ACCTGC 2 cut(s) 42, 1775
Cac8I GCNNGC 5 cut(s) 18, 29, 293, 912, 938
CfoI GCGC 5 cut(s) 213, 515, 791, 858, 928
Cfr13I GGNCC 3 cut(s) 29, 467, 1112
Cfr42I CCGCGG 1 cut(s) 28
Csp6I GTAC 6 cut(s) 156, 429, 798, 824, 1074, 1450
CviQI GTAC 6 cut(s) 156, 429, 798, 824, 1074, 1450
DdeI CTNAG 3 cut(s) 636, 817, 1819
DraIII CACNNNGTG 1 cut(s) 1680
EaeI YGGCCR 3 cut(s) 104, 746, 1267
Eco130I CCWWGG 3 cut(s) 286, 765, 931
Eco32I GATATC 2 cut(s) 850, 1687
Eco47I GGWCC 2 cut(s) 467, 1112
Eco57I CTGAAG 2 cut(s) 1317, 1859
Eco88I CYCGRG 3 cut(s) 134, 776, 1518
EcoRI GAATTC 2 cut(s) 1556, 1670
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 2 cut(s) 850, 1687
EcoT14I CCWWGG 3 cut(s) 286, 765, 931
ErhI CCWWGG 3 cut(s) 286, 765, 931
Esp3I CGTCTC 3 cut(s) 392, 1021, 1037
FalI AAGNNNNNCTT 2 cut(s) 1572, 1604
FaqI GGGAC 2 cut(s) 1493, 1707
FauI CCCGC 4 cut(s) 20, 32, 686, 1518
FbaI TGATCA 1 cut(s) 1213
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 641, 691, 1293
FokI GGATG 3 cut(s) 617, 1348, 1469
Fsp4HI GCNGC 3 cut(s) 641, 691, 1293
FspBI CTAG 2 cut(s) 272, 1473
FspI TGCGCA 3 cut(s) 212, 790, 857
GlaI GCGC 5 cut(s) 212, 514, 790, 857, 927
GluI GCNGC 3 cut(s) 641, 691, 1293
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 4 cut(s) 31, 106, 748, 1269
HapII CCGG 3 cut(s) 559, 902, 1454
HhaI GCGC 5 cut(s) 213, 515, 791, 858, 928
Hin1I GRCGYC 1 cut(s) 1030
Hin6I GCGC 5 cut(s) 211, 513, 789, 856, 926
HinP1I GCGC 5 cut(s) 211, 513, 789, 856, 926
HincII GTYRAC 2 cut(s) 735, 1764
HindII GTYRAC 2 cut(s) 735, 1764
HindIII AAGCTT 4 cut(s) 99, 233, 741, 956
HpaII CCGG 3 cut(s) 559, 902, 1454
HphI GGTGA 4 cut(s) 177, 425, 1070, 1288
Hpy166II GTNNAC 4 cut(s) 195, 735, 1279, 1764
Hpy8I GTNNAC 4 cut(s) 195, 735, 1279, 1764
HpyAV CCTTC 6 cut(s) 352, 490, 1135, 1334, 1574, 1606
HpyCH4III ACNGT 8 cut(s) 160, 172, 428, 604, 802, 814, 1417, 1799
HpyCH4IV ACGT 3 cut(s) 385, 1030, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 266, 627, 911, 1483, 1639
HpyF3I CTNAG 3 cut(s) 636, 817, 1819
HpySE526I ACGT 3 cut(s) 385, 1030, 1196
Hsp92I GRCGYC 1 cut(s) 1030
HspAI GCGC 5 cut(s) 211, 513, 789, 856, 926
KpnI GGTACC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 1213
KspI CCGCGG 1 cut(s) 28
LmnI GCTCC 5 cut(s) 13, 401, 933, 1343, 1436
Lsp1109I GCAGC 3 cut(s) 652, 702, 1304
LweI GCATC 3 cut(s) 639, 1447, 1486
MaeI CTAG 2 cut(s) 272, 1473
MaeII ACGT 3 cut(s) 385, 1030, 1196
MaeIII GTNAC 3 cut(s) 183, 1300, 1417
MboII GAAGA 8 cut(s) 140, 601, 782, 901, 1273, 1790, 1852, 1855
MfeI CAATTG 1 cut(s) 1431
MflI RGATCY 3 cut(s) 841, 1237, 1786
MhlI GDGCHC 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 1269
MluNI TGGCCA 1 cut(s) 1269
MlyI GAGTC 7 cut(s) 241, 538, 886, 1183, 1370, 1729, 1832
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 3 cut(s) 273, 1735, 1746
Mox20I TGGCCA 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 1269
MseI TTAA 4 cut(s) 401, 1046, 1407, 1626
Msp20I TGGCCA 1 cut(s) 1269
MspA1I CMGCKG 4 cut(s) 27, 693, 910, 1295
MspI CCGG 3 cut(s) 559, 902, 1454
MspR9I CCNGG 2 cut(s) 190, 1454
MunI CAATTG 1 cut(s) 1431
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 6 cut(s) 92, 266, 627, 911, 1483, 1639
NciI CCSGG 1 cut(s) 1454
NcoI CCATGG 2 cut(s) 286, 931
NlaIV GGNNCC 6 cut(s) 15, 468, 825, 906, 1113, 1788
NmuCI GTSAC 3 cut(s) 183, 1300, 1417
NsbI TGCGCA 3 cut(s) 212, 790, 857
NspI RCATGY 1 cut(s) 542
PciI ACATGT 1 cut(s) 538
PfeI GAWTC 5 cut(s) 164, 806, 1399, 1605, 1663
PkrI GCNGC 3 cut(s) 642, 692, 1294
PleI GAGTC 7 cut(s) 241, 537, 886, 1182, 1369, 1728, 1831
PpsI GAGTC 7 cut(s) 241, 537, 886, 1182, 1369, 1728, 1831
PscI ACATGT 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 6 cut(s) 15, 468, 825, 906, 1113, 1788
PspPI GGNCC 3 cut(s) 29, 467, 1112
PstI CTGCAG 1 cut(s) 1183
PsuI RGATCY 3 cut(s) 841, 1237, 1786
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 6 cut(s) 157, 430, 799, 825, 1075, 1451
RsaNI GTAC 6 cut(s) 156, 429, 798, 824, 1074, 1450
SacII CCGCGG 1 cut(s) 28
SaqAI TTAA 4 cut(s) 401, 1046, 1407, 1626
SatI GCNGC 3 cut(s) 641, 691, 1293
Sau96I GGNCC 3 cut(s) 29, 467, 1112
SchI GAGTC 7 cut(s) 241, 538, 886, 1183, 1370, 1729, 1832
ScrFI CCNGG 2 cut(s) 190, 1454
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 3 cut(s) 639, 1447, 1486
SfcI CTRYAG 4 cut(s) 195, 837, 1179, 1524
Sfr303I CCGCGG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 28
SinI GGWCC 2 cut(s) 467, 1112
SsiI CCGC 8 cut(s) 25, 27, 379, 693, 908, 1024, 1511, 1660
SspMI CTAG 2 cut(s) 272, 1473
StyD4I CCNGG 2 cut(s) 188, 1452
StyI CCWWGG 3 cut(s) 286, 765, 931
TaaI ACNGT 8 cut(s) 160, 172, 428, 604, 802, 814, 1417, 1799
TaiI ACGT 3 cut(s) 388, 1033, 1199
TaqI TCGA 6 cut(s) 44, 724, 1035, 1563, 1666, 1826
TatI WGTACW 2 cut(s) 428, 1073
TfiI GAWTC 5 cut(s) 164, 806, 1399, 1605, 1663
Tru1I TTAA 4 cut(s) 401, 1046, 1407, 1626
Tru9I TTAA 4 cut(s) 401, 1046, 1407, 1626
TscAI CASTG 4 cut(s) 431, 491, 609, 1401
TseFI GTSAC 3 cut(s) 183, 1300, 1417
TseI GCWGC 3 cut(s) 640, 690, 1292
Tsp45I GTSAC 3 cut(s) 183, 1300, 1417
TspDTI ATGAA 9 cut(s) 132, 295, 602, 774, 1215, 1549, 1553, 1562, 1569
TspGWI ACGGA 4 cut(s) 50, 692, 1691, 1799
TspRI CASTG 4 cut(s) 431, 491, 609, 1401
VpaK11BI GGWCC 2 cut(s) 467, 1112
XapI RAATTY 6 cut(s) 365, 506, 1221, 1556, 1670, 1808
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 3 cut(s) 175, 483, 817
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 2 cut(s) 272, 1473
ZraI GACGTC 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.