Rorug03G0099000

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000145
Physical Location & Seq
Reverse (-)
7738191 .. 7739809
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0099000.1

Sequence Viewer

Length: 603 bp
ATGCATCGCCGATTCCTCGGCAACACCACAGAGCTGCCCTACAACAATGGCAACCGTACAGCGGATTCCTACATAAGCGAGATGAATTTCGACACAAACATGGTCATCATCTTGGCGGCTCTTTTGTGTGCCCTCATATGCGCTCTTGGCTTGAACTCAATAGTGCGTTGCGCGCTTCGCTGCAGCCACAGGTTTACTCTTGAGACCCCGGAGCAGGCTGCAGCGCGACTCGCGGCCACGGGGCTCAAGAAGAGTCATTTGAGGCAGATTCCGGTTGCGGTTTACGGTGAAGGGATTCATATTCCGGCGACCGAGTGTCCGATCTGTCTCGGAGAGTTTGAGGACGGCGAGAAGGTTAGAGTGCTGCCAAAATGTAACCACGGATTCCATGTGAGGTGCATAGACACTTGGCTTGTGTCACACTCATCATGCCCGAATTGTCGGCATTCACTGCTCGAGCAACAACAACCATCGAAGAAAACTAGAACTACTAGTCGTAGTACTGGTAGTACTAGTTCTGAAGCGACAGAGAATTCATCACCAACAGCCAGTGAGTCCCACCAGGAAGGCAGAGTAGTTCTGGTGATTGATGAAGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.02

Weight (kDa)

7.6

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 105 - 148 1.3e-15 Ring finger domain
zf-RING_11 PF17123 105 - 134 1.4e-12 RING-like zinc finger
zf-C3HC4_2 PF13923 105 - 147 6.1e-10 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 105 - 148 2.6e-07 RING-H2 zinc finger domain
zf-C3HC4 PF00097 106 - 147 8.4e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 173, 226, 233
AciI CCGC 4 cut(s) 62, 116, 233, 278
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 2 cut(s) 85, 532
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 3 cut(s) 58, 502, 511
AfiI CCNNNNNNNGG 2 cut(s) 61, 214
AgsI TTSAA 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 315
AhlI ACTAGT 2 cut(s) 491, 512
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 197, 332
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 6 cut(s) 34, 180, 183, 218, 221, 364
ApoI RAATTY 2 cut(s) 85, 532
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 4 cut(s) 143, 173, 175, 226
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 299, 531, 595
AvaI CYCGRG 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 246
BbvI GCAGC 6 cut(s) 21, 167, 195, 205, 233, 351
BccI CCATC 1 cut(s) 478
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 563
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 197, 332
BcuI ACTAGT 2 cut(s) 491, 512
BfaI CTAG 3 cut(s) 483, 492, 513
BfmI CTRYAG 2 cut(s) 181, 219
BisI GCNGC 8 cut(s) 35, 117, 181, 184, 219, 222, 234, 365
BlsI GCNGC 8 cut(s) 36, 118, 182, 185, 220, 223, 235, 366
BmcAI AGTACT 2 cut(s) 502, 511
Bme1390I CCNGG 2 cut(s) 209, 563
BmeRI GACNNNNNGTC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 209, 563
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 2 cut(s) 221, 230
BpuMI CCSGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 16, 207, 237, 379
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 214
Bse1I ACTGG 2 cut(s) 508, 549
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 4 cut(s) 16, 207, 237, 379
BseLI CCNNNNNNNGG 2 cut(s) 61, 214
BseNI ACTGG 2 cut(s) 508, 549
BsePI GCGCGC 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 6 cut(s) 21, 167, 195, 205, 233, 351
Bsh1236I CGCG 3 cut(s) 173, 226, 233
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 3 cut(s) 209, 272, 305
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 61, 214
BsmAI GTCTC 2 cut(s) 197, 332
BsmFI GGGAC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 133, 246
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 4 cut(s) 62, 116, 233, 278
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 3 cut(s) 173, 226, 233
BspMAI CTGCAG 2 cut(s) 185, 223
BspTNI GGTCTC 1 cut(s) 197
BsrI ACTGG 2 cut(s) 508, 549
BssECI CCNNGG 4 cut(s) 16, 207, 237, 379
BssHII GCGCGC 1 cut(s) 171
BssMI GATC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 56, 287
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 173, 216
BstDSI CCRYGG 2 cut(s) 237, 379
BstFNI CGCG 3 cut(s) 173, 226, 233
BstHHI GCGC 4 cut(s) 143, 173, 175, 226
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 2 cut(s) 197, 332
BstMBI GATC 1 cut(s) 321
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 5 cut(s) 147, 172, 177, 230, 451
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 207, 561
BstSFI CTRYAG 2 cut(s) 181, 219
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 3 cut(s) 173, 226, 233
BstV1I GCAGC 6 cut(s) 21, 167, 195, 205, 233, 351
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 237, 379
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 449, 556
Cac8I GCNNGC 2 cut(s) 173, 216
CfoI GCGC 4 cut(s) 143, 173, 175, 226
Csp6I GTAC 3 cut(s) 57, 501, 510
CviAII CATG 3 cut(s) 100, 389, 429
CviJI RGCY 9 cut(s) 34, 119, 150, 186, 218, 236, 244, 412, 548
CviKI_1 RGCY 9 cut(s) 34, 119, 150, 186, 218, 236, 244, 412, 548
CviQI GTAC 3 cut(s) 57, 501, 510
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
DriI GACNNNNNGTC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 561
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 103, 392, 432
FaiI YATR 8 cut(s) 74, 101, 137, 139, 300, 390, 401, 430
FaqI GGGAC 1 cut(s) 541
FatI CATG 3 cut(s) 99, 388, 428
FauNDI CATATG 1 cut(s) 137
Fnu4HI GCNGC 8 cut(s) 35, 117, 181, 184, 219, 222, 234, 365
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 8 cut(s) 35, 117, 181, 184, 219, 222, 234, 365
FspBI CTAG 3 cut(s) 483, 492, 513
GlaI GCGC 4 cut(s) 142, 172, 174, 225
GluI GCNGC 8 cut(s) 35, 117, 181, 184, 219, 222, 234, 365
HaeIII GGCC 1 cut(s) 236
HapII CCGG 3 cut(s) 209, 272, 305
HhaI GCGC 4 cut(s) 143, 173, 175, 226
Hin1II CATG 3 cut(s) 103, 392, 432
Hin6I GCGC 4 cut(s) 141, 171, 173, 224
HinP1I GCGC 4 cut(s) 141, 171, 173, 224
HinfI GANTC 8 cut(s) 12, 65, 228, 253, 268, 295, 384, 554
HpaII CCGG 3 cut(s) 209, 272, 305
HphI GGTGA 3 cut(s) 299, 531, 595
Hpy166II GTNNAC 2 cut(s) 195, 283
Hpy188I TCNGA 3 cut(s) 321, 332, 520
Hpy188III TCNNGA 2 cut(s) 200, 247
Hpy8I GTNNAC 2 cut(s) 195, 283
HpyAV CCTTC 3 cut(s) 284, 346, 560
HpyCH4III ACNGT 2 cut(s) 56, 287
HpyCH4V TGCA 4 cut(s) 4, 183, 221, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 172, 177, 230, 451
Hsp92II CATG 3 cut(s) 103, 392, 432
HspAI GCGC 4 cut(s) 141, 171, 173, 224
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 6 cut(s) 21, 167, 195, 205, 233, 351
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 483, 492, 513
MaeIII GTNAC 2 cut(s) 374, 417
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 262, 487
MhlI GDGCHC 2 cut(s) 133, 246
MluCI AATT 3 cut(s) 85, 436, 532
MlyI GAGTC 3 cut(s) 222, 262, 563
MnlI CCTC 5 cut(s) 26, 143, 255, 334, 387
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 209, 272, 305
MspR9I CCNGG 2 cut(s) 209, 563
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 3 cut(s) 173, 226, 233
MwoI GCNNNNNNNGC 5 cut(s) 147, 172, 177, 230, 451
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 137
NdeII GATC 1 cut(s) 321
NlaIII CATG 3 cut(s) 103, 392, 432
NmuCI GTSAC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 455
PauI GCGCGC 1 cut(s) 171
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 5 cut(s) 12, 65, 268, 295, 384
PkrI GCNGC 8 cut(s) 36, 118, 182, 185, 220, 223, 235, 366
PleI GAGTC 3 cut(s) 222, 261, 562
PpsI GAGTC 3 cut(s) 222, 261, 562
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspXI VCTCGAGB 1 cut(s) 455
PsrI GAACNNNNNNTAC 2 cut(s) 499, 531
PstI CTGCAG 2 cut(s) 185, 223
PteI GCGCGC 1 cut(s) 171
RsaI GTAC 3 cut(s) 58, 502, 511
RsaNI GTAC 3 cut(s) 57, 501, 510
RseI CAYNNNNRTG 1 cut(s) 98
SatI GCNGC 8 cut(s) 35, 117, 181, 184, 219, 222, 234, 365
Sau3AI GATC 1 cut(s) 321
ScaI AGTACT 2 cut(s) 502, 511
SchI GAGTC 3 cut(s) 222, 262, 563
ScrFI CCNGG 2 cut(s) 209, 563
SduI GDGCHC 2 cut(s) 133, 246
SetI ASST 5 cut(s) 36, 194, 357, 398, 602
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 181, 219
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 200, 245, 455
SmoI CTYRAG 3 cut(s) 200, 245, 455
SpeI ACTAGT 2 cut(s) 491, 512
Sse9I AATT 3 cut(s) 85, 436, 532
SsiI CCGC 4 cut(s) 62, 116, 233, 278
SspMI CTAG 3 cut(s) 483, 492, 513
StyD4I CCNGG 2 cut(s) 207, 561
TaaI ACNGT 2 cut(s) 56, 287
TaqI TCGA 3 cut(s) 90, 456, 473
TaqII GACCGA 1 cut(s) 326
TasI AATT 3 cut(s) 85, 436, 532
TatI WGTACW 2 cut(s) 500, 509
TauI GCSGC 2 cut(s) 119, 236
TfiI GAWTC 5 cut(s) 12, 65, 268, 295, 384
TscAI CASTG 2 cut(s) 456, 556
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 6 cut(s) 34, 180, 183, 218, 221, 364
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 3 cut(s) 98, 287, 525
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 2 cut(s) 456, 556
XapI RAATTY 2 cut(s) 85, 532
XhoI CTCGAG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 3 cut(s) 483, 492, 513
ZrmI AGTACT 2 cut(s) 502, 511
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.