pycom13g03890

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000145
Physical Location & Seq
Reverse (-)
2579422 .. 2582883
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03890.1

Sequence Viewer

Length: 1140 bp
ATGGAGACCAGCGAAAACGGCGGCGCTCAGCAGACGCAGAGGCGCAAGGACAAGCACCGCAAGCCGAAGCCTTGGGACGACGACCCTAACATTGACCGCTGGACCATTGAAAAGTTCGACCCTTCTTGGAACGAAGGCGGCATGCTTGAAGTCACCTCCTTCTCTACGCTTTTCCCTCAATACAGAGAAAAATACTTGCAAGAATGCTGGCCAGTGGTGAAATCTTCTTTGAAAGAGTACGGCATCACGTGCGAACTGAATCTGGTTGAGGGTTCCATGACAGTCTCAACAACCAGGAAGACTAAAGACCCCTATATTATTGTCAAAGCTAGGGATCTTATCAAACTTTTGTCAAGAAGTGTTCCTGCTCCTCAGGCAATAAAAATACTTAATGATGAAATGCAATGTGACATTATCAAGATTAGCAGCTTTGTGAGAAGTAAGGAACGATTTGTAAAACGGCGGGACCGACTGATTGGCCCCAATTCGTCCACTTTGAAGGCACTTGAAATACTTACGGGCTGTTATATTCTGGTTCAAGGAAACACCGTTTCGGTAATGGGCTCATTTAAAGCATTGAAGCAAGTCAGGAGGATTGTGGAAGACTGCATGACGAATGCAATGCATCCCATATTTCATATCAAGACTCTCATGGTGCGGAAAGAACTTGAAAAGGATCCGGCGCTGGCTCATGAGAACTGGGATAGATTTCTTCCCAAGTTCAAGAAGAAAAATATTAATCAAAATAAGGTCAAGAGTAAAGAGAAGAGACCATATACACCATTCCCGCCTCCTCAGCAACCTAGCAAGATTGACATACAATTGGAAACTGGAGAATACTTTTTGAACGACAAAGTGAAATCCGCAAAGAAGTGGCAAGAGAAGCAGGAGAAACAGTCTGAAAAAACTGCAGAAAATAAGCGAAAAAGAGAAGCTGCTTTCATTCCTCCTAAGGAGCCTGCAGTCCAGGAGACCAAATCTGATGATGGTAACAAAGATCTGGCTTCCGTAGCCACGTCTCTGAAGAAAAAGGCAAAAGAGTATGGAATACAAAGAATGGCTGAGAATGTAAATCCAGAAGCATATCTTGCGGAATCTGGAGAACCATCGAAAAAGAAATCCAAGCGCAAGCATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

43.73

Weight (kDa)

9.62

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 53 - 132 1.1e-30 Krr1 KH1 domain
KH_KRR1_2nd PF21800 134 - 225 1.8e-43 KRR1 small subunit processome component, second KH domain
KH_PNO1_2nd PF22891 137 - 209 1.4e-07 Eukaryotic type KH-domain (KH-domain type I)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 21, 58, 97, 138, 463, 658, 788, 864, 1091
AclWI GGATC 3 cut(s) 342, 671, 684
AcoI YGGCCR 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 1043
AcvI CACGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 239
AjiI CACGTC 1 cut(s) 1017
AjnI CCWGG 2 cut(s) 293, 966
AluBI AGCT 3 cut(s) 329, 429, 935
AluI AGCT 3 cut(s) 329, 429, 935
Alw26I GTCTC 4 cut(s) 289, 763, 965, 1023
AlwI GGATC 3 cut(s) 342, 671, 684
AoxI GGCC 2 cut(s) 209, 478
ApeKI GCWGC 2 cut(s) 426, 935
AseI ATTAAT 1 cut(s) 738
AspLEI GCGC 4 cut(s) 26, 45, 685, 1128
AspS9I GGNCC 3 cut(s) 102, 466, 479
AsuHPI GGTGA 2 cut(s) 145, 229
AvaII GGWCC 2 cut(s) 102, 466
AxyI CCTNAGG 2 cut(s) 372, 951
BalI TGGCCA 1 cut(s) 211
BamHI GGATCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 566
BbrPI CACGTG 1 cut(s) 249
BbsI GAAGAC 2 cut(s) 305, 609
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 2 cut(s) 438, 922
BccI CCATC 2 cut(s) 980, 1114
BceAI ACGGC 3 cut(s) 34, 256, 476
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 2 cut(s) 295, 968
BcoDI GTCTC 4 cut(s) 289, 763, 965, 1023
BfaI CTAG 3 cut(s) 330, 804, 1138
BfmI CTRYAG 2 cut(s) 909, 960
BfoI RGCGCY 2 cut(s) 27, 686
BglII AGATCT 1 cut(s) 997
BisI GCNGC 4 cut(s) 22, 139, 427, 936
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 4 cut(s) 23, 140, 428, 937
Bme1390I CCNGG 2 cut(s) 295, 968
Bme18I GGWCC 2 cut(s) 102, 466
BmgBI CACGTC 1 cut(s) 1017
BmgT120I GGNCC 3 cut(s) 102, 466, 479
BmiI GGNNCC 5 cut(s) 274, 467, 481, 678, 957
BmrFI CCNGG 2 cut(s) 295, 968
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 2 cut(s) 252, 634
BmuI ACTGGG 1 cut(s) 709
BpiI GAAGAC 2 cut(s) 305, 609
BpmI CTGGAG 2 cut(s) 852, 1119
Bpu10I CCTNAGC 1 cut(s) 795
Bpu1102I GCTNAGC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 249
BsaI GGTCTC 2 cut(s) 763, 965
BsaJI CCNNGG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bse1I ACTGG 3 cut(s) 212, 704, 835
Bse21I CCTNAGG 2 cut(s) 372, 951
Bse3DI GCAATG 2 cut(s) 410, 627
BseBI CCWGG 2 cut(s) 295, 968
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 625
BseMI GCAATG 2 cut(s) 410, 627
BseMII CTCAG 4 cut(s) 41, 386, 809, 1053
BseNI ACTGG 3 cut(s) 212, 704, 835
BseRI GAGGAG 2 cut(s) 360, 783
BseXI GCAGC 2 cut(s) 438, 922
BshFI GGCC 2 cut(s) 211, 480
BsiSI CCGG 1 cut(s) 680
BslFI GGGAC 2 cut(s) 89, 479
BsmAI GTCTC 4 cut(s) 289, 763, 965, 1023
BsmBI CGTCTC 1 cut(s) 1023
BsmFI GGGAC 2 cut(s) 89, 479
BsmI GAATGC 3 cut(s) 209, 622, 1132
BsnI GGCC 2 cut(s) 211, 480
Bso31I GGTCTC 2 cut(s) 763, 965
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 3 cut(s) 334, 676, 997
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 9 cut(s) 21, 58, 97, 138, 463, 658, 788, 864, 1091
BspANI GGCC 2 cut(s) 211, 480
BspCNI CTCAG 4 cut(s) 40, 385, 808, 1054
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 5 cut(s) 274, 467, 481, 678, 957
BspMAI CTGCAG 2 cut(s) 913, 964
BspPI GGATC 3 cut(s) 342, 671, 684
BspTNI GGTCTC 2 cut(s) 763, 965
BsrDI GCAATG 2 cut(s) 410, 627
BsrI ACTGG 3 cut(s) 212, 704, 835
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 3 cut(s) 334, 676, 997
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 295, 968
Bst4CI ACNGT 3 cut(s) 283, 550, 897
Bst6I CTCTTC 1 cut(s) 761
BstAPI GCANNNNNTGC 2 cut(s) 249, 1088
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 6 cut(s) 62, 143, 209, 687, 960, 1130
BstDEI CTNAG 5 cut(s) 27, 372, 795, 951, 1062
BstF5I GGATG 1 cut(s) 625
BstH2I RGCGCY 2 cut(s) 27, 686
BstHHI GCGC 4 cut(s) 26, 45, 685, 1128
BstKTI GATC 3 cut(s) 337, 679, 1000
BstMAI GTCTC 4 cut(s) 289, 763, 965, 1023
BstMBI GATC 3 cut(s) 334, 676, 997
BstMWI GCNNNNNNNGC 8 cut(s) 18, 61, 249, 374, 796, 883, 1010, 1088
BstNI CCWGG 2 cut(s) 295, 968
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 293, 966
BstSFI CTRYAG 2 cut(s) 909, 960
BstV1I GCAGC 2 cut(s) 438, 922
BstV2I GAAGAC 2 cut(s) 305, 609
BstX2I RGATCY 3 cut(s) 334, 676, 997
BstYI RGATCY 3 cut(s) 334, 676, 997
Bsu36I CCTNAGG 2 cut(s) 372, 951
BsuRI GGCC 2 cut(s) 211, 480
BtrI CACGTC 1 cut(s) 1017
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 6 cut(s) 62, 143, 209, 687, 960, 1130
CciI TCATGA 1 cut(s) 691
CfoI GCGC 4 cut(s) 26, 45, 685, 1128
Cfr13I GGNCC 3 cut(s) 102, 466, 479
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 238
CviAII CATG 5 cut(s) 142, 277, 610, 652, 692
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 27, 372, 795, 951, 1062
DpnI GATC 3 cut(s) 336, 678, 999
DpnII GATC 3 cut(s) 334, 676, 997
DraI TTTAAA 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 2 cut(s) 763, 965
Eco47I GGWCC 2 cut(s) 102, 466
Eco57I CTGAAG 1 cut(s) 1043
Eco72I CACGTG 1 cut(s) 249
Eco81I CCTNAGG 2 cut(s) 372, 951
EcoRII CCWGG 2 cut(s) 293, 966
EcoT14I CCWWGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 1023
FaeI CATG 5 cut(s) 145, 280, 613, 655, 695
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 2 cut(s) 89, 479
FatI CATG 5 cut(s) 141, 276, 609, 651, 691
FauI CCCGC 2 cut(s) 456, 795
Fnu4HI GCNGC 4 cut(s) 22, 139, 427, 936
FokI GGATG 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 4 cut(s) 22, 139, 427, 936
FspBI CTAG 3 cut(s) 330, 804, 1138
GlaI GCGC 4 cut(s) 25, 44, 684, 1127
GluI GCNGC 4 cut(s) 22, 139, 427, 936
GsuI CTGGAG 2 cut(s) 852, 1119
HaeII RGCGCY 2 cut(s) 27, 686
HaeIII GGCC 2 cut(s) 211, 480
HapII CCGG 1 cut(s) 680
HgaI GACGC 1 cut(s) 43
HhaI GCGC 4 cut(s) 26, 45, 685, 1128
Hin1II CATG 5 cut(s) 145, 280, 613, 655, 695
Hin6I GCGC 4 cut(s) 24, 43, 683, 1126
HinP1I GCGC 4 cut(s) 24, 43, 683, 1126
HinfI GANTC 3 cut(s) 259, 646, 1094
HpaII CCGG 1 cut(s) 680
HphI GGTGA 2 cut(s) 145, 229
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 3 cut(s) 901, 982, 1023
Hpy188III TCNNGA 9 cut(s) 354, 418, 589, 643, 692, 724, 754, 1076, 1098
Hpy8I GTNNAC 1 cut(s) 492
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 128, 132, 169, 493
HpyCH4III ACNGT 3 cut(s) 283, 550, 897
HpyCH4IV ACGT 2 cut(s) 248, 1016
HpyCH4V TGCA 7 cut(s) 199, 403, 609, 620, 625, 911, 962
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 61, 249, 374, 796, 883, 1010, 1088
HpyF3I CTNAG 5 cut(s) 27, 372, 795, 951, 1062
HpySE526I ACGT 2 cut(s) 248, 1016
Hsp92II CATG 5 cut(s) 145, 280, 613, 655, 695
HspAI GCGC 4 cut(s) 24, 43, 683, 1126
Kzo9I GATC 3 cut(s) 334, 676, 997
LmnI GCTCC 2 cut(s) 373, 955
Lsp1109I GCAGC 2 cut(s) 438, 922
LweI GCATC 2 cut(s) 252, 634
MaeI CTAG 3 cut(s) 330, 804, 1138
MaeII ACGT 2 cut(s) 248, 1016
MaeIII GTNAC 3 cut(s) 151, 407, 989
MalI GATC 3 cut(s) 336, 678, 999
MboI GATC 3 cut(s) 334, 676, 997
MboII GAAGA 7 cut(s) 216, 310, 614, 704, 739, 778, 1036
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 3 cut(s) 334, 676, 997
MhlI GDGCHC 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 2 cut(s) 484, 821
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 1 cut(s) 640
MnlI CCTC 9 cut(s) 33, 166, 186, 262, 381, 585, 801, 804, 957
Mox20I TGGCCA 1 cut(s) 211
Mph1103I ATGCAT 1 cut(s) 627
MscI TGGCCA 1 cut(s) 211
MseI TTAA 3 cut(s) 390, 570, 738
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 2 cut(s) 295, 968
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 3 cut(s) 209, 622, 1132
MvaI CCWGG 2 cut(s) 295, 968
MwoI GCNNNNNNNGC 8 cut(s) 18, 61, 249, 374, 796, 883, 1010, 1088
NdeII GATC 3 cut(s) 334, 676, 997
NlaIII CATG 5 cut(s) 145, 280, 613, 655, 695
NlaIV GGNNCC 5 cut(s) 274, 467, 481, 678, 957
NmuCI GTSAC 2 cut(s) 151, 407
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PagI TCATGA 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PctI GAATGC 3 cut(s) 209, 622, 1132
PfeI GAWTC 2 cut(s) 259, 1094
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 4 cut(s) 23, 140, 428, 937
PleI GAGTC 1 cut(s) 640
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
PpsI GAGTC 1 cut(s) 640
Ppu21I YACGTR 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 293, 966
PspCI CACGTG 1 cut(s) 249
PspGI CCWGG 2 cut(s) 293, 966
PspN4I GGNNCC 5 cut(s) 274, 467, 481, 678, 957
PspPI GGNCC 3 cut(s) 102, 466, 479
PstI CTGCAG 2 cut(s) 913, 964
PsuI RGATCY 3 cut(s) 334, 676, 997
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 3 cut(s) 390, 570, 738
SatI GCNGC 4 cut(s) 22, 139, 427, 936
Sau3AI GATC 3 cut(s) 334, 676, 997
Sau96I GGNCC 3 cut(s) 102, 466, 479
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 2 cut(s) 295, 968
SduI GDGCHC 1 cut(s) 566
SetI ASST 8 cut(s) 158, 251, 331, 431, 753, 805, 937, 1019
SfaNI GCATC 2 cut(s) 252, 634
SfcI CTRYAG 2 cut(s) 909, 960
SinI GGWCC 2 cut(s) 102, 466
SphI GCATGC 1 cut(s) 145
Sse9I AATT 2 cut(s) 484, 821
SsiI CCGC 9 cut(s) 21, 58, 97, 138, 463, 658, 788, 864, 1091
SspI AATATT 1 cut(s) 736
SspMI CTAG 3 cut(s) 330, 804, 1138
StyD4I CCNGG 2 cut(s) 293, 966
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 283, 550, 897
TaiI ACGT 2 cut(s) 251, 1019
TaqI TCGA 2 cut(s) 117, 1109
TaqII GACCGA 1 cut(s) 483
TasI AATT 2 cut(s) 484, 821
TauI GCSGC 2 cut(s) 24, 141
TfiI GAWTC 2 cut(s) 259, 1094
Tru1I TTAA 3 cut(s) 390, 570, 738
Tru9I TTAA 3 cut(s) 390, 570, 738
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 151, 407
TseI GCWGC 2 cut(s) 426, 935
Tsp45I GTSAC 2 cut(s) 151, 407
TspDTI ATGAA 3 cut(s) 411, 626, 931
TspGWI ACGGA 1 cut(s) 997
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 102, 466
VspI ATTAAT 1 cut(s) 738
XceI RCATGY 1 cut(s) 145
XspI CTAG 3 cut(s) 330, 804, 1138
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.