RchiOBHm_Chr7g0190161

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000145
Physical Location & Seq
Reverse (-)
9324696 .. 9325441
746 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16982

Sequence Viewer

Length: 300 bp
ATGCAGATCGACCAGTCGGCCCCTTCCTGCAACGAGACCTCTTTCTCTGCCCTATTCCATGAAAAACGAGAAAAGAAGTTGCAAGATGCTTGGCCGATGCTGGAATCGTCTTTCGAAGAGTTTGGCGTTTCATGTGCACTGAATCTGGCTGAGCGTTCCGTGATAGTCTCAACAACCGGAAGGACTAAGGGCCGGAATTCTTTTGATAAGGCTACACGCATCGTTGAACTTTTGGCAACAACTCATGTTCCACCATATCTGGTACAAACGGAGATCCCTTTTGTTGTCATCTTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

5.62

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 14 - 79 2.6e-08 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 29, 172
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 1 cut(s) 268
AoxI GGCC 3 cut(s) 18, 92, 190
ApaLI GTGCAC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 19, 190
AsuII TTCGAA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 29, 172
BlpI GCTNAGC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 19, 190
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 3 cut(s) 76, 87, 228
Bpu1102I GCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 139
BshFI GGCC 3 cut(s) 20, 94, 192
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 177, 193
BsmAI GTCTC 2 cut(s) 29, 172
BsnI GGCC 3 cut(s) 20, 94, 192
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 6, 273
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 20, 94, 192
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 13
BssMI GATC 2 cut(s) 6, 273
Bst6I CTCTTC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 150, 186
BstKTI GATC 2 cut(s) 9, 276
BstMAI GTCTC 2 cut(s) 29, 172
BstMBI GATC 2 cut(s) 6, 273
BstSLI GKGCMC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 3 cut(s) 20, 94, 192
BtsIMutI CAGTG 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 19, 190
Csp6I GTAC 1 cut(s) 263
CviAII CATG 3 cut(s) 59, 132, 245
CviJI RGCY 5 cut(s) 20, 94, 149, 192, 212
CviKI_1 RGCY 5 cut(s) 20, 94, 149, 192, 212
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 150, 186
DpnI GATC 2 cut(s) 8, 275
DpnII GATC 2 cut(s) 6, 273
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 196
FaeI CATG 3 cut(s) 62, 135, 248
FaiI YATR 4 cut(s) 60, 133, 246, 256
FatI CATG 3 cut(s) 58, 131, 244
HaeIII GGCC 3 cut(s) 20, 94, 192
HapII CCGG 2 cut(s) 177, 193
Hin1II CATG 3 cut(s) 62, 135, 248
HinfI GANTC 2 cut(s) 104, 142
HpaII CCGG 2 cut(s) 177, 193
Hpy166II GTNNAC 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 33, 174
HpyCH4V TGCA 4 cut(s) 4, 30, 82, 137
HpyF3I CTNAG 2 cut(s) 150, 186
Hsp92II CATG 3 cut(s) 62, 135, 248
Kzo9I GATC 2 cut(s) 6, 273
LpnPI CCDG 7 cut(s) 26, 40, 86, 131, 190, 206, 245
LweI GCATC 3 cut(s) 76, 87, 228
MalI GATC 2 cut(s) 8, 275
MboI GATC 2 cut(s) 6, 273
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 196
MnlI CCTC 1 cut(s) 49
MspI CCGG 2 cut(s) 177, 193
NdeII GATC 2 cut(s) 6, 273
NlaIII CATG 3 cut(s) 62, 135, 248
NlaIV GGNNCC 1 cut(s) 21
NspV TTCGAA 1 cut(s) 114
PfeI GAWTC 2 cut(s) 104, 142
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 19, 190
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
Sau3AI GATC 2 cut(s) 6, 273
Sau96I GGNCC 2 cut(s) 19, 190
SduI GDGCHC 1 cut(s) 139
SetI ASST 1 cut(s) 41
SfaNI GCATC 3 cut(s) 76, 87, 228
SfuI TTCGAA 1 cut(s) 114
Sse9I AATT 1 cut(s) 196
TaqI TCGA 2 cut(s) 9, 114
TasI AATT 1 cut(s) 196
TfiI GAWTC 2 cut(s) 104, 142
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 75, 120
TspGWI ACGGA 2 cut(s) 148, 284
TspRI CASTG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 135
XapI RAATTY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.