Rh7CG113000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000145
Physical Location & Seq
Reverse (-)
8742093 .. 8751225
9133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG113000.1

Sequence Viewer

Length: 1161 bp
ATGGAAATCGGCGTCGTTCCGCTGAACATTGACAAGTCCCGTTCCCTTATTCTTCGAACGAGACTTCTTTCTCGGCCTTCTTCCATGAAAAACAAGGCTGAGCGTTCTTTGACAATCTCAACAACCAGAAGGACTAAGGGCCGAAATTATTTTATCAAGGCTAGGCGTCTCGTTGAACTTTTGACAGCAACTCATGTTCCACCACATATGGCAATAGAAACACTAAACGGTGATCGGAGACATATCCTCATCAAGATTGGGAATCAAGAAGGTGGGCTTTGCTCAAAATTTGGGATAAAAAAGGAGAAATTTATCAAACAATGGGAATGTCTTGCCTGCTCTCTAGAGGCACTGGCAGCACTGACGCATTGCAAGCTTTTTCTTAATGAAAACAATCTTGCTGCAGTGGGTCCAGCTCCATCATTCTTGATGGTCAGGAAGATTGTTGTTGACTGCATTGCTAATGACATGAATCCAGAAACTTGTATGAGGGAGTTGATGACAGAATCCTTTCAGATGCGTGCAAAGAAATATGGGGCGATTGAACTTCAACAACCAAATGTCGATGACATTGGAATGGAGAAGTGTGGCCCCTTTTTGGATTTATATGGCATGCTTGAAGCTGAGCGTAGCTTGACAATATCAACTACCAGAAGGACTATACATCCAGATATGGTGGACCAGGCTGGGGCTTTTCTTGAACTTTTGGCTACAACGAGTATTCCGGCAACTAAGGCAGCAGAAATACTGAATGGCCGCCTGCAATATGAAGTCATCAAGACTGCGTTTCAGGATGGTGGACTTTGTGCAAAATATGAGATTGAGAAGGACTGTGCTAAAAACAGGGAACGGTTGAATCGCAACTCACAGGCAGTTGCACGCCTTTTGAAGTGTGATATTTACATAAATGGAAGCAGGGTGGTTGCAGTAGGGAATTCAGCTTCAGGATTGAGGCTGTTCAGGTCAGTTGTGGAATGCTGTTTTATCAAAAATGAAGATCCTGTAGCTGTTGCCAGTAGGTTAAAGCTGGATCGTAAAACCCAGATAGCAAATACTTGGGTCTTGATCTCAGGTGTCATTTGGCATAAGAAGGGGTTCTGGTCTTCTGGAGATGCAGCAGACAAAGGGGAAGATGAAGAGAACGGGAAGATGCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

386

Amino Acids

43.16

Weight (kDa)

9.24

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 100 - 168 7.4e-08 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 757
AclWI GGATC 2 cut(s) 992, 1038
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 3 cut(s) 287, 308, 934
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 2 cut(s) 12, 166
AfiI CCNNNNNNNGG 2 cut(s) 598, 688
AgsI TTSAA 7 cut(s) 176, 545, 551, 620, 701, 856, 889
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 7 cut(s) 376, 416, 623, 633, 941, 1007, 1027
AluI AGCT 7 cut(s) 376, 416, 623, 633, 941, 1007, 1027
Alw26I GTCTC 3 cut(s) 55, 173, 232
AlwI GGATC 2 cut(s) 992, 1038
AoxI GGCC 4 cut(s) 74, 139, 589, 754
ApeKI GCWGC 4 cut(s) 356, 401, 737, 1115
ApoI RAATTY 3 cut(s) 287, 308, 934
Asp700I GAANNNNTTC 2 cut(s) 510, 1094
AspS9I GGNCC 4 cut(s) 139, 410, 590, 679
AsuHPI GGTGA 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 55
AvaII GGWCC 2 cut(s) 410, 679
BbsI GAAGAC 1 cut(s) 1095
BbvI GCAGC 4 cut(s) 368, 388, 749, 1127
BccI CCATC 3 cut(s) 424, 427, 788
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 55, 173, 232
BfaI CTAG 2 cut(s) 162, 344
BfmI CTRYAG 2 cut(s) 402, 1002
BisI GCNGC 5 cut(s) 357, 402, 738, 757, 1116
BlpI GCTNAGC 2 cut(s) 99, 624
BlsI GCNGC 5 cut(s) 358, 403, 739, 758, 1117
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 2 cut(s) 410, 679
BmgT120I GGNCC 4 cut(s) 139, 410, 590, 679
BmiI GGNNCC 2 cut(s) 411, 592
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 3 cut(s) 507, 1102, 1140
BpiI GAAGAC 1 cut(s) 1095
BpmI CTGGAG 1 cut(s) 1128
Bpu1102I GCTNAGC 2 cut(s) 99, 624
Bpu14I TTCGAA 1 cut(s) 55
BsaHI GRCGYC 2 cut(s) 12, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 688
Bse1I ACTGG 2 cut(s) 357, 1014
Bse3DI GCAATG 2 cut(s) 367, 456
BseBI CCWGG 1 cut(s) 683
BseGI GGATG 2 cut(s) 664, 799
BseLI CCNNNNNNNGG 2 cut(s) 598, 688
BseMI GCAATG 2 cut(s) 367, 456
BseMII CTCAG 3 cut(s) 90, 615, 1083
BseNI ACTGG 2 cut(s) 357, 1014
BseXI GCAGC 4 cut(s) 368, 388, 749, 1127
BseYI CCCAGC 1 cut(s) 686
BshFI GGCC 4 cut(s) 76, 141, 591, 756
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 598, 688
BsmAI GTCTC 3 cut(s) 55, 173, 232
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 4 cut(s) 76, 141, 591, 756
Bsp119I TTCGAA 1 cut(s) 55
Bsp143I GATC 4 cut(s) 232, 997, 1030, 1065
Bsp1720I GCTNAGC 2 cut(s) 99, 624
BspACI CCGC 2 cut(s) 20, 757
BspANI GGCC 4 cut(s) 76, 141, 591, 756
BspCNI CTCAG 3 cut(s) 91, 616, 1082
BspLI GGNNCC 2 cut(s) 411, 592
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 2 cut(s) 992, 1038
BspT104I TTCGAA 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 367, 456
BsrI ACTGG 2 cut(s) 357, 1014
BssMI GATC 4 cut(s) 232, 997, 1030, 1065
BssNI GRCGYC 2 cut(s) 12, 166
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 3 cut(s) 230, 833, 852
Bst6I CTCTTC 1 cut(s) 1131
BstACI GRCGYC 2 cut(s) 12, 166
BstBI TTCGAA 1 cut(s) 55
BstC8I GCNNGC 6 cut(s) 337, 374, 522, 614, 761, 880
BstDEI CTNAG 5 cut(s) 99, 135, 624, 732, 1069
BstF5I GGATG 2 cut(s) 664, 799
BstKTI GATC 4 cut(s) 235, 1000, 1033, 1068
BstMAI GTCTC 3 cut(s) 55, 173, 232
BstMBI GATC 4 cut(s) 232, 997, 1030, 1065
BstMWI GCNNNNNNNGC 3 cut(s) 356, 373, 734
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 402, 1002
BstV1I GCAGC 4 cut(s) 368, 388, 749, 1127
BstV2I GAAGAC 1 cut(s) 1095
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BsuRI GGCC 4 cut(s) 76, 141, 591, 756
BtsCI GGATG 2 cut(s) 664, 799
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 350, 359, 411
Cac8I GCNNGC 6 cut(s) 337, 374, 522, 614, 761, 880
Cfr13I GGNCC 4 cut(s) 139, 410, 590, 679
CseI GACGC 2 cut(s) 155, 373
CviAII CATG 4 cut(s) 85, 194, 469, 613
DdeI CTNAG 5 cut(s) 99, 135, 624, 732, 1069
DpnI GATC 4 cut(s) 234, 999, 1032, 1067
DpnII GATC 4 cut(s) 232, 997, 1030, 1065
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 1131
EarI CTCTTC 1 cut(s) 1131
Eco47I GGWCC 2 cut(s) 410, 679
Eco57I CTGAAG 1 cut(s) 927
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 1 cut(s) 681
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 88, 197, 472, 616
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 84, 193, 468, 612
FauNDI CATATG 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 357, 402, 738, 757, 1116
FokI GGATG 2 cut(s) 651, 806
Fsp4HI GCNGC 5 cut(s) 357, 402, 738, 757, 1116
FspBI CTAG 2 cut(s) 162, 344
GluI GCNGC 5 cut(s) 357, 402, 738, 757, 1116
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 4 cut(s) 76, 141, 591, 756
HapII CCGG 1 cut(s) 725
HgaI GACGC 2 cut(s) 155, 373
Hin1I GRCGYC 2 cut(s) 12, 166
Hin1II CATG 4 cut(s) 88, 197, 472, 616
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 4 cut(s) 262, 472, 506, 856
HpaII CCGG 1 cut(s) 725
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 451, 679, 800
Hpy188I TCNGA 2 cut(s) 237, 516
Hpy8I GTNNAC 3 cut(s) 451, 679, 800
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 6 cut(s) 87, 123, 263, 648, 820, 1084
HpyCH4III ACNGT 3 cut(s) 230, 833, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 373, 734
HpyF3I CTNAG 5 cut(s) 99, 135, 624, 732, 1069
Hsp92I GRCGYC 2 cut(s) 12, 166
Hsp92II CATG 4 cut(s) 88, 197, 472, 616
Kzo9I GATC 4 cut(s) 232, 997, 1030, 1065
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 368, 388, 749, 1127
LweI GCATC 3 cut(s) 507, 1102, 1140
MaeI CTAG 2 cut(s) 162, 344
MalI GATC 4 cut(s) 234, 999, 1032, 1067
MboI GATC 4 cut(s) 232, 997, 1030, 1065
MboII GAAGA 8 cut(s) 44, 72, 451, 1007, 1095, 1142, 1148, 1159
MflI RGATCY 1 cut(s) 997
MluCI AATT 4 cut(s) 145, 287, 308, 934
MnlI CCTC 4 cut(s) 257, 340, 483, 945
MroXI GAANNNNTTC 2 cut(s) 510, 1094
MseI TTAA 2 cut(s) 384, 1022
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 1 cut(s) 683
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 3 cut(s) 356, 373, 734
NdeI CATATG 1 cut(s) 207
NdeII GATC 4 cut(s) 232, 997, 1030, 1065
NlaIII CATG 4 cut(s) 88, 197, 472, 616
NlaIV GGNNCC 2 cut(s) 411, 592
NmeAIII GCCGAG 1 cut(s) 52
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 55
PaeI GCATGC 1 cut(s) 616
PctI GAATGC 1 cut(s) 980
PdmI GAANNNNTTC 2 cut(s) 510, 1094
PfeI GAWTC 4 cut(s) 262, 472, 506, 856
PkrI GCNGC 5 cut(s) 358, 403, 739, 758, 1117
Psp6I CCWGG 1 cut(s) 681
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 2 cut(s) 411, 592
PspPI GGNCC 4 cut(s) 139, 410, 590, 679
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 997
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 2 cut(s) 384, 1022
SatI GCNGC 5 cut(s) 357, 402, 738, 757, 1116
Sau3AI GATC 4 cut(s) 232, 997, 1030, 1065
Sau96I GGNCC 4 cut(s) 139, 410, 590, 679
ScrFI CCNGG 1 cut(s) 683
SfaNI GCATC 3 cut(s) 507, 1102, 1140
SfcI CTRYAG 2 cut(s) 402, 1002
SfuI TTCGAA 1 cut(s) 55
SinI GGWCC 2 cut(s) 410, 679
SmiMI CAYNNNNRTG 1 cut(s) 575
SphI GCATGC 1 cut(s) 616
Sse9I AATT 4 cut(s) 145, 287, 308, 934
SsiI CCGC 2 cut(s) 20, 757
SspMI CTAG 2 cut(s) 162, 344
StyD4I CCNGG 1 cut(s) 681
TaaI ACNGT 3 cut(s) 230, 833, 852
TaqI TCGA 2 cut(s) 55, 564
TasI AATT 4 cut(s) 145, 287, 308, 934
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 4 cut(s) 262, 472, 506, 856
Tru1I TTAA 2 cut(s) 384, 1022
Tru9I TTAA 2 cut(s) 384, 1022
TscAI CASTG 3 cut(s) 357, 366, 411
TseI GCWGC 4 cut(s) 356, 401, 737, 1115
TspDTI ATGAA 6 cut(s) 101, 402, 485, 783, 1008, 1149
TspRI CASTG 3 cut(s) 357, 366, 411
VpaK11BI GGWCC 2 cut(s) 410, 679
XapI RAATTY 3 cut(s) 287, 308, 934
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 1 cut(s) 616
XmnI GAANNNNTTC 2 cut(s) 510, 1094
XspI CTAG 2 cut(s) 162, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.