Rh7DG194400

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000145
Physical Location & Seq
Forward (+)
18241874 .. 18242302
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG194400.1

Sequence Viewer

Length: 429 bp
ATGAATCCATATACTATAGACAAGGTTGGTGTTGTTCTTGAACTTGTGGTAAGTAATCGAACTAGTCTTCCGGCAACCAACCCAGTAGAAATAATAAATGGTCGTGTGCAATATGAAGTCATCAAGACTGGGTTTCACAATGGTGGGCTTTGTGCAAAATTGGTATACGAGAAGGATAAGTATGTTAAAAACAGGGAACGTTTGAGGCAAAACTCACAGGCACTCGGACGCCTGTTGAAGTGTGACATTTATATAAATGGATACATTATTGTTGCAGTGGGGACTTCAGCTGCAGAATTAAGGCTGTTCAGGTCAGTTGTGGAATGTTGTTTTCTTAGAAATGAAGATCCTGTAACAGTTGCCAGGAGGTTAAAACTGGATCGTAAAGTGTACCGGTTGATGAACAAGATTCAAGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.17

Weight (kDa)

9.61

Isoelectric Point (pI)

22.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 53 - 130 1.6e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AclI AACGTT 1 cut(s) 199
AclWI GGATC 2 cut(s) 341, 387
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 1 cut(s) 392
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 41, 238, 413
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 362
AleI CACNNNNGTG 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 290, 416
AluI AGCT 2 cut(s) 290, 416
AlwI GGATC 2 cut(s) 341, 387
ApeKI GCWGC 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 2 cut(s) 15, 291
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 364
BmrI ACTGGG 2 cut(s) 77, 138
BmuI ACTGGG 2 cut(s) 77, 138
BpiI GAAGAC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 83, 133, 381
BseBI CCWGG 1 cut(s) 364
BseNI ACTGG 3 cut(s) 83, 133, 381
BseXI GCAGC 1 cut(s) 277
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 2 cut(s) 71, 394
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 346, 379
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 2 cut(s) 341, 387
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 3 cut(s) 83, 133, 381
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 2 cut(s) 346, 379
BssNAI GTATAC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 335
BstKTI GATC 2 cut(s) 349, 382
BstMBI GATC 2 cut(s) 346, 379
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 2 cut(s) 15, 291
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 166
BsuI GTATCC 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 393
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 393
CviJI RGCY 4 cut(s) 148, 290, 304, 416
CviKI_1 RGCY 4 cut(s) 148, 290, 304, 416
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 348, 381
DpnII GATC 2 cut(s) 346, 379
Eco57I CTGAAG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 362
FaiI YATR 8 cut(s) 10, 12, 17, 114, 166, 183, 252, 254
FaqI GGGAC 1 cut(s) 295
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 291
HapII CCGG 2 cut(s) 71, 394
HgaI GACGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 2 cut(s) 4, 409
HpaII CCGG 2 cut(s) 71, 394
Hpy166II GTNNAC 2 cut(s) 166, 391
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 38, 124
Hpy8I GTNNAC 2 cut(s) 166, 391
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 109, 155, 275, 293
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 346, 379
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 242, 352
MalI GATC 2 cut(s) 348, 381
MboI GATC 2 cut(s) 346, 379
MboII GAAGA 2 cut(s) 59, 356
MflI RGATCY 1 cut(s) 346
MluCI AATT 2 cut(s) 158, 296
MnlI CCTC 2 cut(s) 198, 360
MseI TTAA 3 cut(s) 186, 299, 371
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 71, 394
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
NdeII GATC 2 cut(s) 346, 379
NmuCI GTSAC 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 141
PfeI GAWTC 2 cut(s) 4, 409
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 1 cut(s) 292
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 3 cut(s) 186, 299, 371
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 346, 379
ScrFI CCNGG 1 cut(s) 364
SetI ASST 6 cut(s) 27, 202, 292, 314, 371, 418
SfcI CTRYAG 2 cut(s) 15, 291
SmiMI CAYNNNNRTG 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 158, 296
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 58
TasI AATT 2 cut(s) 158, 296
TfiI GAWTC 2 cut(s) 4, 409
Tru1I TTAA 3 cut(s) 186, 299, 371
Tru9I TTAA 3 cut(s) 186, 299, 371
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 4 cut(s) 17, 129, 357, 416
TspRI CASTG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.