FvH4_5g09380

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000145
Physical Location & Seq
Reverse (-)
5420238 .. 5422177
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09380.t1

Sequence Viewer

Length: 564 bp
ATGGCGATGGCGCTGGTGACGGCGACGGCTGTGGCCTCGGAGCAGCACCTCAAATCGGAGCTGTGGAGGACCGGAAATACCAATAATCAGAGAAGGTTGGCCATTGATAGGACCTGCTTTGCAGGAGCAAGGTATTTTTTGCCTAGTGAACCTGGAGAAGCGCTACATCAAAATGAAAACCACCAAATACATGAGGGATCCAGATATATTGAAAGGGATAGGGAGTTCATCCAGCTCTTGTCTAAAACTGATGTTTCACCATCTACGTGTATACAAATACTGAATGGCGATCTGCATCATGAGTTCATCAAGCTTATTGGATTCCAAGAAGGTGCGTTGTGCATAATGCATGGCATCAGCAAGGAACTTGAACGCCTGTTGAGTTGTCAGATTTATGTTAATGTAAACTCTGCTACTCTTGTGAGTAGTTCACTTTGGAGCCTAAAGACAGCAAGAAGGGCTGTGGAGAGGTGCTTTGTCGAAAATGTGAGTGCTGCAGATCTTGTCAAGACGATGAAAGCGAAGGTCGCTCTAGAGATGAAGCTTGAGCGTTTGCGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.14

Weight (kDa)

8.31

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 271
AclWI GGATC 2 cut(s) 192, 205
AcoI YGGCCR 1 cut(s) 99
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 55, 108
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 212, 371
AjnI CCWGG 1 cut(s) 151
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 4 cut(s) 61, 235, 313, 544
AluI AGCT 4 cut(s) 61, 235, 313, 544
AlwI GGATC 2 cut(s) 192, 205
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 2 cut(s) 33, 99
ApeKI GCWGC 2 cut(s) 43, 494
AspLEI GCGC 2 cut(s) 13, 163
AspS9I GGNCC 2 cut(s) 69, 111
AsuHPI GGTGA 2 cut(s) 28, 249
AvaII GGWCC 2 cut(s) 69, 111
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 55, 481
BccI CCATC 1 cut(s) 268
BceAI ACGGC 2 cut(s) 36, 42
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 2 cut(s) 144, 533
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 2 cut(s) 14, 164
BfuAI ACCTGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 499
BisI GCNGC 2 cut(s) 44, 495
BlsI GCNGC 2 cut(s) 45, 496
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 69, 111
BmgT120I GGNCC 2 cut(s) 69, 111
BmiI GGNNCC 2 cut(s) 199, 440
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 304, 363
BpmI CTGGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 108
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 55, 108
BseXI GCAGC 2 cut(s) 55, 481
BshFI GGCC 2 cut(s) 35, 101
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 55, 108
BsnI GGCC 2 cut(s) 35, 101
Bsp143I GATC 3 cut(s) 197, 289, 499
BspANI GGCC 2 cut(s) 35, 101
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 199, 440
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 192, 205
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 197, 289, 499
BssNAI GTATAC 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 267
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 2 cut(s) 14, 164
BstHHI GCGC 2 cut(s) 13, 163
BstKTI GATC 3 cut(s) 200, 292, 502
BstMBI GATC 3 cut(s) 197, 289, 499
BstMWI GCNNNNNNNGC 2 cut(s) 458, 527
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 2 cut(s) 55, 481
BstX2I RGATCY 2 cut(s) 197, 499
BstYI RGATCY 2 cut(s) 197, 499
BstZ17I GTATAC 1 cut(s) 272
BsuRI GGCC 2 cut(s) 35, 101
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 122
CciI TCATGA 1 cut(s) 298
CfoI GCGC 2 cut(s) 13, 163
Cfr13I GGNCC 2 cut(s) 69, 111
CviAII CATG 3 cut(s) 191, 299, 350
CviJI RGCY 9 cut(s) 29, 35, 61, 101, 235, 313, 441, 461, 544
CviKI_1 RGCY 9 cut(s) 29, 35, 61, 101, 235, 313, 441, 461, 544
DpnI GATC 3 cut(s) 199, 291, 501
DpnII GATC 3 cut(s) 197, 289, 499
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 69, 111
Eco47III AGCGCT 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 351
FaeI CATG 3 cut(s) 194, 302, 353
FaiI YATR 7 cut(s) 192, 207, 272, 300, 344, 351, 396
FatI CATG 3 cut(s) 190, 298, 349
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 44, 495
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 44, 495
FspBI CTAG 2 cut(s) 144, 533
GlaI GCGC 2 cut(s) 12, 162
GluI GCNGC 2 cut(s) 44, 495
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 2 cut(s) 14, 164
HaeIII GGCC 2 cut(s) 35, 101
HapII CCGG 1 cut(s) 72
HhaI GCGC 2 cut(s) 13, 163
Hin1II CATG 3 cut(s) 194, 302, 353
Hin6I GCGC 2 cut(s) 11, 161
HinP1I GCGC 2 cut(s) 11, 161
HindIII AAGCTT 2 cut(s) 311, 542
HinfI GANTC 1 cut(s) 321
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 28, 249
Hpy166II GTNNAC 4 cut(s) 149, 272, 406, 431
Hpy188I TCNGA 4 cut(s) 40, 58, 90, 390
Hpy188III TCNNGA 4 cut(s) 201, 299, 508, 533
Hpy8I GTNNAC 4 cut(s) 149, 272, 406, 431
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 4 cut(s) 87, 323, 450, 517
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 122, 295, 342, 349, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 527
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 3 cut(s) 194, 302, 353
HspAI GCGC 2 cut(s) 11, 161
Kzo9I GATC 3 cut(s) 197, 289, 499
LmnI GCTCC 4 cut(s) 40, 58, 125, 438
LpnPI CCDG 8 cut(s) 85, 108, 127, 138, 165, 214, 245, 389
Lsp1109I GCAGC 2 cut(s) 55, 481
LweI GCATC 2 cut(s) 304, 363
MaeI CTAG 2 cut(s) 144, 533
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 199, 291, 501
MboI GATC 3 cut(s) 197, 289, 499
MflI RGATCY 2 cut(s) 197, 499
MlsI TGGCCA 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 101
MnlI CCTC 5 cut(s) 46, 59, 60, 187, 462
Mox20I TGGCCA 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 351
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 2 cut(s) 171, 265
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 458, 527
NdeII GATC 3 cut(s) 197, 289, 499
NlaIII CATG 3 cut(s) 194, 302, 353
NlaIV GGNNCC 2 cut(s) 199, 440
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 351
PagI TCATGA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 2 cut(s) 45, 496
Ppu21I YACGTR 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 199, 440
PspPI GGNCC 2 cut(s) 69, 111
PspPPI RGGWCCY 1 cut(s) 111
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 197, 499
RseI CAYNNNNRTG 2 cut(s) 171, 265
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 44, 495
Sau3AI GATC 3 cut(s) 197, 289, 499
Sau96I GGNCC 2 cut(s) 69, 111
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 2 cut(s) 304, 363
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 2 cut(s) 69, 111
SmiMI CAYNNNNRTG 2 cut(s) 171, 265
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SspMI CTAG 2 cut(s) 144, 533
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 480
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 43, 494
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 5 cut(s) 189, 217, 295, 530, 554
VpaK11BI GGWCC 2 cut(s) 69, 111
XbaI TCTAGA 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 2 cut(s) 144, 533
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.