Rh5CG117500

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000145
Physical Location & Seq
Reverse (-)
9713585 .. 9716449
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG117500.1

Sequence Viewer

Length: 525 bp
ATGATGCACATATTAAATCGTTGGTTTTCTAATTATGCTCAGGTTAAGGGTAATATGAAGGTTTTTAAAACTAAAGGGGCTGAAGATGAAGACATAATTTTCAAGGCAATTGATATTTTGCAGCTTTTGTCGAGAAGTGTTCCAGCACGTTGGGCAATACGAACGCTGGATTGCAGTTGGCAACATGAGATCATCAAGATTGGGAATCAAGAAGGGGGGATTTGCAACATATTTGGGATCAGTAAGGAGCAATTTCTTGCACGGAGGAATCTTATCGTTGGTGTCATGAAGGGACTTTTTGAACTTACTGGCTGTGGCGTTTTTCTTAAGGGAAATACCATTGCTGTTATAGGTCCACTGCAAGGAATAAAGACGATAACAAAGATTGTGGAAGACTGCATCGCTCATAATGTGCCTCCTGCACCCCGTGTGCGGAGGATTAAAAAGAAGACTCAACTGATGAAGGATGCGAGAATTAAAATGACAAGTGAAGTGATGATGAGTCTCGAGGCTTTTCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.67

Weight (kDa)

9.79

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 80 - 155 2.3e-13 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 433
AclWI GGATC 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 362, 432
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 2 cut(s) 103, 302
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 96, 399, 455
BbvI GCAGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 2 cut(s) 408, 457
BpiI GAAGAC 3 cut(s) 96, 399, 455
Bpu10I CCTNAGC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 432
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 339
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 2 cut(s) 362, 432
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 362, 432
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 506
Bsp143I GATC 2 cut(s) 189, 237
BspACI CCGC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 285
BspPI GGATC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 313
BssMI GATC 2 cut(s) 189, 237
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 472
BstKTI GATC 2 cut(s) 192, 240
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 2 cut(s) 189, 237
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 3 cut(s) 96, 399, 455
BstXI CCANNNNNNTGG 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 472
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 3 cut(s) 185, 286, 518
CviJI RGCY 4 cut(s) 80, 124, 312, 512
CviKI_1 RGCY 4 cut(s) 80, 124, 312, 512
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 191, 239
DpnII GATC 2 cut(s) 189, 237
DraI TTTAAA 1 cut(s) 67
DraIII CACNNNGTG 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 506
FaeI CATG 3 cut(s) 188, 289, 521
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 184, 285, 517
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 188, 289, 521
HinfI GANTC 4 cut(s) 205, 268, 451, 502
Hpy166II GTNNAC 1 cut(s) 356
Hpy188III TCNNGA 5 cut(s) 132, 196, 209, 286, 506
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 52, 206, 283, 457
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 8 cut(s) 7, 121, 174, 225, 260, 361, 399, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 188, 289, 521
Kzo9I GATC 2 cut(s) 189, 237
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 26, 152, 156, 294, 432
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 408, 457
MaeII ACGT 1 cut(s) 148
MalI GATC 2 cut(s) 191, 239
MboI GATC 2 cut(s) 189, 237
MboII GAAGA 4 cut(s) 95, 101, 404, 460
MfeI CAATTG 1 cut(s) 108
MluCI AATT 5 cut(s) 31, 96, 108, 251, 474
MlyI GAGTC 2 cut(s) 445, 511
MnlI CCTC 4 cut(s) 258, 426, 429, 502
MseI TTAA 6 cut(s) 14, 45, 66, 327, 441, 477
MspCI CTTAAG 1 cut(s) 326
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 189, 237
NlaIII CATG 3 cut(s) 188, 289, 521
PaeR7I CTCGAG 1 cut(s) 506
PagI TCATGA 1 cut(s) 285
PfeI GAWTC 2 cut(s) 205, 268
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 2 cut(s) 445, 510
PpsI GAGTC 2 cut(s) 445, 510
PspPI GGNCC 1 cut(s) 353
SaqAI TTAA 6 cut(s) 14, 45, 66, 327, 441, 477
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 2 cut(s) 189, 237
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 2 cut(s) 445, 511
SetI ASST 5 cut(s) 45, 63, 126, 151, 355
SfaNI GCATC 2 cut(s) 408, 457
Sfr274I CTCGAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 326, 506
SmoI CTYRAG 2 cut(s) 326, 506
Sse9I AATT 5 cut(s) 31, 96, 108, 251, 474
SsiI CCGC 1 cut(s) 433
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 131, 507
TasI AATT 5 cut(s) 31, 96, 108, 251, 474
TfiI GAWTC 2 cut(s) 205, 268
Tru1I TTAA 6 cut(s) 14, 45, 66, 327, 441, 477
Tru9I TTAA 6 cut(s) 14, 45, 66, 327, 441, 477
TscAI CASTG 1 cut(s) 363
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 5 cut(s) 71, 102, 302, 476, 506
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.