FvH4_5g22900

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000145
Physical Location & Seq
Forward (+)
14181864 .. 14185733
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22900.t1

Sequence Viewer

Length: 978 bp
ATGGAGATCGACCCTTGTTCGAAGGAGACTACTTTCTCTGCCTCCTTCCCTCAAAAATACGAAAACAAGTTGCAGGACGCATGGTCGGTGGTCGAGTCATCTTTAGAATTCTATGGCATTGCATGCGCTTTGAATCTGGCTGAGCGCTCTGTGACAATCTCAACAACCACAAGCACTAAGGGCCGGAATTATTTTATCAAGGCTACGCGACTTGTTGAACTTTTGACAACAACTCATGTTCCACCACATATGGCAATAGAAACACTACACGGTAATCAGAAACATATCCTTATCAAGATTGGGAATCAAGAAGGAACGCTTTATAAAACAATGGAAAACTCTCGCCTGCTCCCGAAGGCAGTTGCAGCACGGACGGAGTGCAATCTTTTTCTTAATGAAAACAATCTTGCTGCAGTGGGTTCAGTTCTAGCAGCGGTCAGGATGGTTGTTGTTAAATGCATTGTCAACGACAAGAATCCAGAAACTAAAAAAGAGGTGCAAGAAGCTTGGCCCTTTGTGCACTGGTTTTTAAAAGGATATGGCATTTCTTCCACACTGAATACGGCTGAGCGTTGCTTGATAATATCAACTACCAGAAGGACTATGTATCCAGATATTGTGGACCACGCTGGGGAATTTCTTGAACTTTTGGCTAGAACTAACATTCCGGCAACTAAGGCAGCAGAAATACTGAATGGCCGCCAGCAATATGAAGTCATCAAGACTGGGTTTCAGGATGGTGGACTTTGTGCAAAATTTGATATTGAGGAGCATGGTAAAAATAGGGAAGTGTTGAAGCGCAACTCAAAGGAACTTGCACGCCTTTTGAAATGTGATATTTACATAAATGGATGCAGTGCGGTTGCAGTAGGGGACTTCAGCTTCCGGACTGAGGCTGTTCAGGTCAATTGTGGAATGCTGCTTTTTGAAAAACGAAGATCCTGTAGCTGTTGCGAGGAGGTTAAAGCTGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.27

Weight (kDa)

8.2

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 12 - 77 1.3e-07 Krr1 KH1 domain
KH_KRR1_1st PF17903 165 - 232 3.1e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccII CGCG 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 885
AciI CCGC 3 cut(s) 434, 700, 860
AclWI GGATC 1 cut(s) 933
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 3 cut(s) 107, 635, 755
AcuI CTGAAG 1 cut(s) 862
AfeI AGCGCT 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 631, 892
AgsI TTSAA 6 cut(s) 133, 218, 644, 796, 829, 929
AhdI GACNNNNNGTC 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 4 cut(s) 506, 882, 948, 968
AluI AGCT 4 cut(s) 506, 882, 948, 968
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 1 cut(s) 933
Aor13HI TCCGGA 1 cut(s) 885
Aor51HI AGCGCT 1 cut(s) 146
AoxI GGCC 3 cut(s) 181, 509, 697
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 5 cut(s) 365, 410, 431, 680, 919
ApoI RAATTY 3 cut(s) 107, 635, 755
AspLEI GCGC 3 cut(s) 128, 147, 801
AspS9I GGNCC 3 cut(s) 181, 510, 622
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 5 cut(s) 377, 397, 443, 692, 906
BccI CCATC 2 cut(s) 436, 731
BceAI ACGGC 1 cut(s) 579
BciVI GTATCC 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 428, 654
BfmI CTRYAG 2 cut(s) 411, 943
BfoI RGCGCY 1 cut(s) 148
BfuI GTATCC 1 cut(s) 618
BisI GCNGC 6 cut(s) 366, 411, 432, 681, 700, 920
BlpI GCTNAGC 2 cut(s) 141, 567
BlsI GCNGC 6 cut(s) 367, 412, 433, 682, 701, 921
Bme18I GGWCC 1 cut(s) 622
BmeRI GACNNNNNGTC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 181, 510, 622
BmrI ACTGGG 1 cut(s) 735
BmsI GCATC 1 cut(s) 842
BmuI ACTGGG 1 cut(s) 735
Bpu1102I GCTNAGC 2 cut(s) 141, 567
Bpu14I TTCGAA 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 885
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 892
Bse1I ACTGG 2 cut(s) 527, 730
Bse3DI GCAATG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 885
BseGI GGATG 3 cut(s) 447, 742, 857
BseLI CCNNNNNNNGG 2 cut(s) 631, 892
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 132, 558, 882
BseNI ACTGG 2 cut(s) 527, 730
BseRI GAGGAG 2 cut(s) 782, 971
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 5 cut(s) 377, 397, 443, 692, 906
BseYI CCCAGC 1 cut(s) 629
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 183, 511, 699
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 3 cut(s) 184, 668, 886
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 2 cut(s) 631, 892
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 887
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 3 cut(s) 183, 511, 699
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 522
Bsp13I TCCGGA 1 cut(s) 885
Bsp143I GATC 3 cut(s) 6, 938, 971
Bsp1720I GCTNAGC 2 cut(s) 141, 567
BspACI CCGC 3 cut(s) 434, 700, 860
BspANI GGCC 3 cut(s) 183, 511, 699
BspCNI CTCAG 3 cut(s) 133, 559, 883
BspEI TCCGGA 1 cut(s) 885
BspFNI CGCG 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 1 cut(s) 933
BspT104I TTCGAA 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 2 cut(s) 527, 730
BssMI GATC 3 cut(s) 6, 938, 971
Bst4CI ACNGT 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 124, 347, 704, 820
BstDEI CTNAG 5 cut(s) 141, 177, 567, 675, 891
BstF5I GGATG 3 cut(s) 447, 742, 857
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 3 cut(s) 128, 147, 801
BstKTI GATC 3 cut(s) 9, 941, 974
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 6, 938, 971
BstMWI GCNNNNNNNGC 5 cut(s) 123, 180, 365, 517, 677
BstNSI RCATGY 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 411, 943
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 5 cut(s) 377, 397, 443, 692, 906
BstX2I RGATCY 1 cut(s) 938
BstYI RGATCY 1 cut(s) 938
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 3 cut(s) 183, 511, 699
BtsCI GGATG 3 cut(s) 447, 742, 857
BtsI GCAGTG 2 cut(s) 420, 862
BtsIMutI CAGTG 4 cut(s) 420, 520, 554, 862
Cac8I GCNNGC 4 cut(s) 124, 347, 704, 820
CfoI GCGC 3 cut(s) 128, 147, 801
Cfr13I GGNCC 3 cut(s) 181, 510, 622
CseI GACGC 1 cut(s) 86
CviAII CATG 4 cut(s) 81, 123, 236, 773
DdeI CTNAG 5 cut(s) 141, 177, 567, 675, 891
DpnI GATC 3 cut(s) 8, 940, 973
DpnII GATC 3 cut(s) 6, 938, 971
DraI TTTAAA 1 cut(s) 531
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 697
Eam1105I GACNNNNNGTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 622
Eco47III AGCGCT 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 461
FaeI CATG 4 cut(s) 84, 126, 239, 776
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 887
FatI CATG 4 cut(s) 80, 122, 235, 772
FauNDI CATATG 1 cut(s) 249
Fnu4HI GCNGC 6 cut(s) 366, 411, 432, 681, 700, 920
FokI GGATG 3 cut(s) 454, 749, 864
Fsp4HI GCNGC 6 cut(s) 366, 411, 432, 681, 700, 920
FspBI CTAG 2 cut(s) 428, 654
GlaI GCGC 3 cut(s) 127, 146, 800
GluI GCNGC 6 cut(s) 366, 411, 432, 681, 700, 920
GsaI CCCAGC 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 3 cut(s) 183, 511, 699
HapII CCGG 3 cut(s) 184, 668, 886
HgaI GACGC 1 cut(s) 86
HhaI GCGC 3 cut(s) 128, 147, 801
Hin1II CATG 4 cut(s) 84, 126, 239, 776
Hin6I GCGC 3 cut(s) 126, 145, 799
HinP1I GCGC 3 cut(s) 126, 145, 799
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 4 cut(s) 95, 133, 304, 475
HpaII CCGG 3 cut(s) 184, 668, 886
Hpy166II GTNNAC 4 cut(s) 466, 520, 622, 743
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 4 cut(s) 466, 520, 622, 743
HpyAV CCTTC 5 cut(s) 16, 55, 305, 349, 591
HpyCH4III ACNGT 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 180, 365, 517, 677
HpyF3I CTNAG 5 cut(s) 141, 177, 567, 675, 891
Hsp92II CATG 4 cut(s) 84, 126, 239, 776
HspAI GCGC 3 cut(s) 126, 145, 799
Kpn2I TCCGGA 1 cut(s) 885
Kzo9I GATC 3 cut(s) 6, 938, 971
LmnI GCTCC 2 cut(s) 354, 769
Lsp1109I GCAGC 5 cut(s) 377, 397, 443, 692, 906
LweI GCATC 1 cut(s) 842
MaeI CTAG 2 cut(s) 428, 654
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 8, 940, 973
MboI GATC 3 cut(s) 6, 938, 971
MboII GAAGA 2 cut(s) 540, 948
MfeI CAATTG 1 cut(s) 907
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 5 cut(s) 107, 187, 635, 755, 907
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 7 cut(s) 52, 60, 487, 760, 886, 949, 952
Mph1103I ATGCAT 1 cut(s) 461
MroI TCCGGA 1 cut(s) 885
MseI TTAA 4 cut(s) 393, 453, 530, 963
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 3 cut(s) 184, 668, 886
MunI CAATTG 1 cut(s) 907
Mva1269I GAATGC 1 cut(s) 921
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 5 cut(s) 123, 180, 365, 517, 677
NdeI CATATG 1 cut(s) 249
NdeII GATC 3 cut(s) 6, 938, 971
NlaIII CATG 4 cut(s) 84, 126, 239, 776
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 461
NspI RCATGY 1 cut(s) 126
NspV TTCGAA 1 cut(s) 20
PaeI GCATGC 1 cut(s) 126
PctI GAATGC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 133, 304, 475
PkrI GCNGC 6 cut(s) 367, 412, 433, 682, 701, 921
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PsiI TTATAA 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 629
PspPI GGNCC 3 cut(s) 181, 510, 622
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 938
SaqAI TTAA 4 cut(s) 393, 453, 530, 963
SatI GCNGC 6 cut(s) 366, 411, 432, 681, 700, 920
Sau3AI GATC 3 cut(s) 6, 938, 971
Sau96I GGNCC 3 cut(s) 181, 510, 622
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 522
SetI ASST 7 cut(s) 498, 508, 884, 906, 950, 963, 970
SfaNI GCATC 1 cut(s) 842
SfcI CTRYAG 2 cut(s) 411, 943
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 622
SphI GCATGC 1 cut(s) 126
Sse9I AATT 5 cut(s) 107, 187, 635, 755, 907
SsiI CCGC 3 cut(s) 434, 700, 860
SspMI CTAG 2 cut(s) 428, 654
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 3 cut(s) 9, 20, 93
TasI AATT 5 cut(s) 107, 187, 635, 755, 907
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 3 cut(s) 133, 304, 475
Tru1I TTAA 4 cut(s) 393, 453, 530, 963
Tru9I TTAA 4 cut(s) 393, 453, 530, 963
TscAI CASTG 4 cut(s) 420, 527, 561, 862
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 5 cut(s) 365, 410, 431, 680, 919
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 411, 726
TspGWI ACGGA 2 cut(s) 385, 389
TspRI CASTG 4 cut(s) 420, 527, 561, 862
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 3 cut(s) 107, 635, 755
XceI RCATGY 1 cut(s) 126
XspI CTAG 2 cut(s) 428, 654
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.