RchiOBHm_Chr5g0014041

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000145
Physical Location & Seq
Reverse (-)
9546963 .. 9549697
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29452

Sequence Viewer

Length: 861 bp
ATGATTAGTAATGTATTAAGTAAGTGTCTTCCTCATCATTATTGCTCCTATAAAAACCCCTCCTCTCTTTCTTCTTCGGCACTAGAACTCTACCCTTTGAAACACACATTCTCTTCTAGCTCGCCTCTCGATCTGAACTCATCTAGGGTTTCACACCCAGACAAAACCAACAGCTGCAAATCTGCAATGGAGAACAGCAACCCAAAAGCGGACCAGATCGAGGTGGAAGTGTCTGAGTTCGAGAATGATTTTGATGTCGTCTCTTACACCAAGTTCTACGACGAATTCCTCAATGTGGATTTGCTGCAAGAAAGTTGGCCAAAAGTGGAATCTTCTTTAGAAGAGTATGGCGTTTTATGCACCCTGGATATGGTTGAGGGTAAAATGAAAGTCTCAAGAGCCACAAGGGATCAAGACCCAAATATTATTCTCAGGGCTATGGATGTTTTGGAGCTTTTGTCAAGAAGTGTTCCGGCAGAATGGGCAATACGAGTACTGGATTGCAGTTTCCAGTACGACATCATCAAGATTGGGAATCAAGAAGAGGGGATTTGCAATATGTACGGGATCACTAAGGAGCAATTTCTTGCACGGAGGAAGCTTCTGGCTGGCTATGTCCTAAAGGTACTGTTTGAACTGACAGATTGTGGAATTTTTCTTAAGGGAAACACCATTGCTGTGATTGGTGGTTCACTCCAAGGAATAAATATAGTAAGGAGGATTGTCGAAGACTGCATTGCTCATGATGTGCCTCCTCTACCCCGGGCGCGATTGATGAAAAAGAAGTCTCAAAAGAAGAAGGATGAGATGAATAAAGTGGCAAGTGAATTGATGATAAATCTCGAGGGTATGAGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.32

Weight (kDa)

5.83

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 91 - 167 2.7e-15 Krr1 KH1 domain
KH_KRR1_2nd PF21800 172 - 262 2.8e-11 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 769
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 417, 575
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 2 cut(s) 284, 651
AfaI GTAC 4 cut(s) 495, 515, 563, 627
AfiI CCNNNNNNNGG 4 cut(s) 208, 220, 295, 370
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 2 cut(s) 100, 635
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 4 cut(s) 120, 174, 454, 601
AluI AGCT 4 cut(s) 120, 174, 454, 601
Alw26I GTCTC 3 cut(s) 265, 397, 792
AlwI GGATC 2 cut(s) 417, 575
Ama87I CYCGRG 2 cut(s) 762, 842
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 174, 304
ApoI RAATTY 2 cut(s) 284, 651
AspLEI GCGC 1 cut(s) 769
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 2 cut(s) 763, 764
AvaI CYCGRG 2 cut(s) 762, 842
AvaII GGWCC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 319
BbsI GAAGAC 2 cut(s) 20, 735
BbvI GCAGC 2 cut(s) 161, 291
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 763, 764
BcoDI GTCTC 3 cut(s) 265, 397, 792
BfaI CTAG 3 cut(s) 83, 117, 144
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 2 cut(s) 175, 305
BlsI GCNGC 2 cut(s) 176, 306
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 3 cut(s) 365, 763, 764
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 2 cut(s) 762, 842
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 365, 763, 764
BpiI GAAGAC 2 cut(s) 20, 735
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 2 cut(s) 763, 764
BsaJI CCNNGG 4 cut(s) 363, 697, 761, 762
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 220, 295, 370
Bse1I ACTGG 2 cut(s) 501, 511
Bse3DI GCAATG 3 cut(s) 192, 672, 735
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 4 cut(s) 363, 697, 761, 762
BseGI GGATG 2 cut(s) 448, 808
BseLI CCNNNNNNNGG 4 cut(s) 208, 220, 295, 370
BseMI GCAATG 3 cut(s) 192, 672, 735
BseMII CTCAG 2 cut(s) 225, 445
BseNI ACTGG 2 cut(s) 501, 511
BseRI GAGGAG 2 cut(s) 52, 744
BseXI GCAGC 2 cut(s) 161, 291
Bsh1236I CGCG 1 cut(s) 769
BshFI GGCC 1 cut(s) 319
BsiHKCI CYCGRG 2 cut(s) 762, 842
BsiSI CCGG 2 cut(s) 473, 763
BslI CCNNNNNNNGG 4 cut(s) 208, 220, 295, 370
BsmAI GTCTC 3 cut(s) 265, 397, 792
BsmBI CGTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 319
BsoBI CYCGRG 2 cut(s) 762, 842
Bsp143I GATC 5 cut(s) 130, 216, 409, 567, 855
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 226, 444
BspFNI CGCG 1 cut(s) 769
BspHI TCATGA 1 cut(s) 742
BspPI GGATC 2 cut(s) 417, 575
BspTI CTTAAG 1 cut(s) 659
BsrDI GCAATG 3 cut(s) 192, 672, 735
BsrI ACTGG 2 cut(s) 501, 511
BssECI CCNNGG 4 cut(s) 363, 697, 761, 762
BssMI GATC 5 cut(s) 130, 216, 409, 567, 855
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 630
Bst6I CTCTTC 3 cut(s) 118, 336, 537
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 122, 610
BstDEI CTNAG 3 cut(s) 234, 431, 573
BstF5I GGATG 2 cut(s) 448, 808
BstFNI CGCG 1 cut(s) 769
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 5 cut(s) 133, 219, 412, 570, 858
BstMAI GTCTC 3 cut(s) 265, 397, 792
BstMBI GATC 5 cut(s) 130, 216, 409, 567, 855
BstMWI GCNNNNNNNGC 2 cut(s) 357, 482
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 363, 761, 762
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 2 cut(s) 161, 291
BstV2I GAAGAC 2 cut(s) 20, 735
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 448, 808
Cac8I GCNNGC 2 cut(s) 122, 610
CciI TCATGA 1 cut(s) 742
CfoI GCGC 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 211
Cfr9I CCCGGG 1 cut(s) 762
Csp6I GTAC 4 cut(s) 494, 514, 562, 626
CviAII CATG 1 cut(s) 743
CviJI RGCY 9 cut(s) 120, 174, 319, 401, 437, 454, 601, 608, 612
CviKI_1 RGCY 9 cut(s) 120, 174, 319, 401, 437, 454, 601, 608, 612
CviQI GTAC 4 cut(s) 494, 514, 562, 626
DdeI CTNAG 3 cut(s) 234, 431, 573
DpnI GATC 5 cut(s) 132, 218, 411, 569, 857
DpnII GATC 5 cut(s) 130, 216, 409, 567, 855
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 118, 336, 537
EarI CTCTTC 3 cut(s) 118, 336, 537
Eco130I CCWWGG 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 211
Eco88I CYCGRG 2 cut(s) 762, 842
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 1 cut(s) 746
FatI CATG 1 cut(s) 742
Fnu4HI GCNGC 2 cut(s) 175, 305
FokI GGATG 2 cut(s) 455, 815
Fsp4HI GCNGC 2 cut(s) 175, 305
FspBI CTAG 3 cut(s) 83, 117, 144
GlaI GCGC 1 cut(s) 768
GluI GCNGC 2 cut(s) 175, 305
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 473, 763
HhaI GCGC 1 cut(s) 769
Hin1II CATG 1 cut(s) 746
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 2 cut(s) 329, 535
HpaII CCGG 2 cut(s) 473, 763
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 3 cut(s) 135, 235, 860
Hpy188III TCNNGA 9 cut(s) 128, 241, 396, 413, 462, 526, 539, 743, 842
Hpy8I GTNNAC 1 cut(s) 692
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 793
HpyCH4III ACNGT 1 cut(s) 630
HpyCH4V TGCA 8 cut(s) 177, 185, 307, 360, 504, 555, 590, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 482
HpyF3I CTNAG 3 cut(s) 234, 431, 573
Hsp92II CATG 1 cut(s) 746
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 5 cut(s) 130, 216, 409, 567, 855
LmnI GCTCC 3 cut(s) 50, 451, 577
Lsp1109I GCAGC 2 cut(s) 161, 291
MaeI CTAG 3 cut(s) 83, 117, 144
MalI GATC 5 cut(s) 132, 218, 411, 569, 857
MboI GATC 5 cut(s) 130, 216, 409, 567, 855
MboII GAAGA 9 cut(s) 20, 63, 66, 105, 324, 353, 554, 740, 808
MflI RGATCY 1 cut(s) 855
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 4 cut(s) 284, 581, 651, 827
MluNI TGGCCA 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 319
MseI TTAA 2 cut(s) 17, 660
MslI CAYNNNNRTG 1 cut(s) 677
Msp20I TGGCCA 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 473, 763
MspR9I CCNGG 3 cut(s) 365, 763, 764
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 2 cut(s) 357, 482
NciI CCSGG 2 cut(s) 763, 764
NdeII GATC 5 cut(s) 130, 216, 409, 567, 855
NlaIII CATG 1 cut(s) 746
PaeR7I CTCGAG 1 cut(s) 842
PagI TCATGA 1 cut(s) 742
PfeI GAWTC 2 cut(s) 329, 535
PkrI GCNGC 2 cut(s) 176, 306
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 4 cut(s) 495, 515, 563, 627
RsaNI GTAC 4 cut(s) 494, 514, 562, 626
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 2 cut(s) 17, 660
SatI GCNGC 2 cut(s) 175, 305
Sau3AI GATC 5 cut(s) 130, 216, 409, 567, 855
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 495
ScrFI CCNGG 3 cut(s) 365, 763, 764
SetI ASST 6 cut(s) 122, 176, 225, 456, 603, 627
Sfr274I CTCGAG 1 cut(s) 842
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 842
SmaI CCCGGG 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 3 cut(s) 394, 659, 842
SmoI CTYRAG 3 cut(s) 394, 659, 842
Sse9I AATT 4 cut(s) 284, 581, 651, 827
SsiI CCGC 1 cut(s) 209
SspI AATATT 1 cut(s) 424
SspMI CTAG 3 cut(s) 83, 117, 144
StyD4I CCNGG 3 cut(s) 363, 761, 762
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 630
TaqI TCGA 5 cut(s) 129, 219, 240, 726, 843
TasI AATT 4 cut(s) 284, 581, 651, 827
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 329, 535
Tru1I TTAA 2 cut(s) 17, 660
Tru9I TTAA 2 cut(s) 17, 660
TseI GCWGC 2 cut(s) 174, 304
TspDTI ATGAA 3 cut(s) 401, 791, 824
TspGWI ACGGA 1 cut(s) 607
TspMI CCCGGG 1 cut(s) 762
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 2 cut(s) 284, 651
XhoI CTCGAG 1 cut(s) 842
XmaI CCCGGG 1 cut(s) 762
XspI CTAG 3 cut(s) 83, 117, 144
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.