Rroxscaffold_2G00091430

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000145
Physical Location & Seq
Forward (+)
12960847 .. 12967956
7110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091430.1

Sequence Viewer

Length: 2490 bp
ATGGAGAAAACAATGGTGGAGGAGAGCGATTCCGGCGTCCTCGAGCAGCCTATCGGCGAGCCTGCTACCCGTGGGCCTATCCCGATGTCGAACAGCAGGTCTTTCCGTCCGATATGCAATCAAAACCGAGCAAAGTTGGCAGAAGCTTGGCCGATGGTCAAATCGTCCTTGGAAGAACTCGGGTATTCATGCACAATGAGTACGGTTGATTCCACAGTCGTAGTGGTATCACCCTGGTCTACAGCCCCAGATATGCGCAAGGCTGTTTATCTTTTCAAGCTTTTGTTCAAGACTCCTGTTCCGGCACTTCTGGCACTAGAGTTGGCACTCCATGGCAGGCAACATGATTTCATCAAGATTGGCACTCAAAAGGGTGGGCTATGCAAAAAATATGGGGTCAAGAAGGAGAAATTTGATAAACTGCAGATACGTCTCAAACGCTCCTTAGAGGAACTTGGTGATATGACCCACTGTACTCTTTTTCTGACCAAGAGCACTCTTACTGCCGTGGGTCCATCTCCAAGATTACACTGGGTCAGGAAGGTTTTGAAATTCTGCACTATTGAGAAGTTGAGTCTTGCACATGTTATTAGGGTTTTCAACCGGAAGCTGAAACGAAAAACAGCGATGATGAAGAACAGCGATACAGTGATGATGGAGAAAAGCGATTTCAGCATCCCTGAGCAGCCAAAATTCAATCAGGAAGTTGGCGACCCTGTTCCGATGTTGAACAGCAGCGGATCTTTCCGTCCGATCTCCAACACAAATCGAGCAAAGTTGACAGAAGCTTGGCCGATGGTCAAATTGTCCTTGGAAGAACTCGGGTATTCATGCGCAATGAGTACGGTTGATTCCACAGTCTTAGTGGTACCACCCTGTTCTACAGATCCAGATATCATGCGCAAGGCTAATTATCTTTTCCGGCTTTTATTCAAGACTCCTGTTCCGGCACCTCTGGCGATAGAGTTGGCGCTCCATGGCAGGCAACATGATCTCATCAAGCTTGGCGCTCAAAAGGGTGGGATATGCAAAAAATATGGGATCAACAAGGAGAAATTTGATAAACTGTGGATACGTCTCAAACGCTCCTTAAAGGAACTTGGTGATCTGACCCATTGTACTCTATTTTTGAACAAGAGCACTCTTACTGCCGTGGGTCCATCTCCGAGATTATGCTGGGTCAGGAAGGTTTTGAAAATTTGCATTACTGAAGAGTTGAGCCCTGCACATGTTATTAGGGTTTTCAACCGGAAGAAGAAACGAACAACAACAATGATGAAGAGCAGCGATACAATGATGATGGAGAAGAGTGATTCTGGCGTCCTTGAGCAGCCAAAATTCAGTCAGGAAGTTAGCGCGCCTGTTCCGTTGTTGAACAGCAGGTCTTTCTGTCCGATCTCCAATGAAAACCAAGCAAAGTTGAGAGAAGCTTGGCCAATGGTCAAATCATCCTTGGAAGAACTTGGGTATTTATGTGCAATGAGTACGGTTGACTGCACAGTCTCACTGGTATTACCCTGGCCTACAGACCCAGGTATCATGCACAAGGCTGATTATCTTTTCAAACTTTTGTTGAAGACTCCTGTTCCGGCACCGCTGGCAATAGAGTTGGCACTCTTTGGCCGGAAACATGATCTCATCAAGCTTGGCACTCAAAAGGGTGGGATATGCAAAAAATATGGGATCAACAAGGAGAAAATTGATAAACTGCGGAAACGTCTCGAACGCTCCTTAAAGGAACTTAGTGATCTGACCCATTGTACTCTTTTTCTGAACAAAAACACTCTTACTGCTGTGGGTCCATCTCCAAGATTACACTTGGTCAGGAGGGTTTTGGAAATCTGTATAAAAAGAAAGGCAAGTCCTGCAGATGTTATTAGCACGTTGATATGCAAGTATGATCAAAAAATTTCATTTGTTCGGGATCTTGATGTCTCTAATGTCAAGAAGACTGGCCATTTGGTGAACAAAGATGGTGCAGCTGTAGTGACATTGCCCTTTCTTGAAAGACGAGGTGTTTGTGTCATTAAGCGTACTGTGACTATCTCAACAACTGGAGCGACCAAAGAGTACCCGGATGCTTTTGAGAAAGCTAGGCATCTTTTGCAACTTTTGACAACAACTAATGTCCCGCCATCTCGGGCTGTAGAATTAGCGATGAATGGCATGAAGCATGAATTCATCGAGATCGGGTTTCAAGAAGGTGGGCTTTGCTCATTGTATGGAATCAAGAAGGAACAATATGTTAAACGGCGTAAATGGCTCATTCGTTCTGCGAAGCGGATTCGAGAATTCACGGAGTGTGATATCTACTGCACAGGAGACACTATTACTGGTGTGAGTCCCTCTCTTGTGGGATTGAGTATGTTCCGGAGGATTGTGTTGACCTGCATTGTTGAAGATACGGATCCTGCACGTCGTATAAGGAAATTTTTACGCTCAGAGTCGAAAAGGAAGCTGAAGAAGATTATCAAGCGCTTGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

829

Amino Acids

93.51

Weight (kDa)

9.78

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 560 - 632 1.3e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1499
Acc16I TGCGCA 3 cut(s) 257, 835, 902
Acc36I ACCTGC 3 cut(s) 87, 1371, 2396
Acc65I GGTACC 1 cut(s) 868
AccB1I GGYRCC 3 cut(s) 868, 949, 1591
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 1358
AccIII TCCGGA 1 cut(s) 2370
AciI CCGC 5 cut(s) 738, 1595, 1711, 2132, 2281
AclWI GGATC 7 cut(s) 748, 881, 1049, 1691, 1932, 2402, 2415
AcoI YGGCCR 5 cut(s) 149, 791, 1433, 1621, 1954
AcuI CTGAAG 2 cut(s) 1230, 2480
AcyI GRCGYC 2 cut(s) 36, 1320
AdeI CACNNNGTG 1 cut(s) 2301
AfaI GTAC 9 cut(s) 202, 475, 844, 870, 1120, 1486, 1762, 2035, 2072
AfeI AGCGCT 1 cut(s) 2477
AflIII ACRYGT 2 cut(s) 583, 1228
AjiI CACGTC 1 cut(s) 2417
AjnI CCWGG 3 cut(s) 233, 1517, 1531
Alw21I GWGCWC 2 cut(s) 497, 1142
Alw26I GTCTC 6 cut(s) 437, 1082, 1507, 1724, 1939, 2316
AlwI GGATC 7 cut(s) 748, 881, 1049, 1691, 1932, 2402, 2415
Ama87I CYCGRG 4 cut(s) 41, 179, 821, 2139
Aor13HI TCCGGA 1 cut(s) 2370
Aor51HI AGCGCT 1 cut(s) 2477
AoxI GGCC 7 cut(s) 74, 149, 791, 1433, 1520, 1621, 1954
ApeKI GCWGC 6 cut(s) 46, 685, 735, 1284, 1330, 1979
ArsI GACNNNNNNTTYG 6 cut(s) 83, 115, 1942, 1974, 2001, 2033
Asp718I GGTACC 1 cut(s) 868
AspLEI GCGC 8 cut(s) 258, 836, 903, 973, 1010, 1358, 1360, 2478
AspS9I GGNCC 4 cut(s) 74, 512, 1157, 1799
AsuC2I CCSGG 1 cut(s) 2075
AsuHPI GGTGA 4 cut(s) 222, 470, 1115, 1975
AvaI CYCGRG 4 cut(s) 41, 179, 821, 2139
AvaII GGWCC 3 cut(s) 512, 1157, 1799
BaeI ACNNNNGTAYC 2 cut(s) 1519, 1552
BalI TGGCCA 2 cut(s) 1435, 1956
BamHI GGATCC 1 cut(s) 2407
BanI GGYRCC 3 cut(s) 868, 949, 1591
BanII GRGCYC 1 cut(s) 1223
BbsI GAAGAC 2 cut(s) 1583, 1955
Bbv12I GWGCWC 2 cut(s) 497, 1142
BbvI GCAGC 6 cut(s) 58, 697, 747, 1296, 1342, 1991
BccI CCATC 9 cut(s) 148, 523, 649, 790, 1168, 1294, 1810, 1967, 2143
BceAI ACGGC 3 cut(s) 491, 1136, 2267
BciT130I CCWGG 3 cut(s) 235, 1519, 1533
BciVI GTATCC 1 cut(s) 1065
BclI TGATCA 1 cut(s) 1900
BcnI CCSGG 1 cut(s) 2075
BcoDI GTCTC 6 cut(s) 437, 1082, 1507, 1724, 1939, 2316
BfaI CTAG 2 cut(s) 317, 2094
BfmI CTRYAG 7 cut(s) 240, 422, 882, 1524, 1866, 1983, 2145
BfoI RGCGCY 3 cut(s) 974, 1011, 2479
BfuAI ACCTGC 3 cut(s) 87, 1371, 2396
BfuI GTATCC 1 cut(s) 1065
BisI GCNGC 6 cut(s) 47, 686, 736, 1285, 1331, 1980
BlsI GCNGC 6 cut(s) 48, 687, 737, 1286, 1332, 1981
Bme1390I CCNGG 4 cut(s) 235, 1519, 1533, 2075
Bme18I GGWCC 3 cut(s) 512, 1157, 1799
BmeT110I CYCGRG 4 cut(s) 41, 179, 821, 2139
BmgBI CACGTC 1 cut(s) 2417
BmgT120I GGNCC 4 cut(s) 74, 512, 1157, 1799
BmiI GGNNCC 7 cut(s) 513, 870, 951, 1158, 1593, 1800, 2409
BmrFI CCNGG 4 cut(s) 235, 1519, 1533, 2075
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 3 cut(s) 684, 2068, 2107
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 2 cut(s) 1583, 1955
BplI GAGNNNNNCTC 2 cut(s) 2332, 2364
BpmI CTGGAG 1 cut(s) 2076
Bpu10I CCTNAGC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 1346
BpuMI CCSGG 1 cut(s) 2075
BsaBI GATNNNNATC 1 cut(s) 2406
BsaHI GRCGYC 2 cut(s) 36, 1320
BsaWI WCCGGW 3 cut(s) 603, 1248, 2370
Bse1I ACTGG 5 cut(s) 536, 1512, 1957, 2059, 2338
Bse3DI GCAATG 3 cut(s) 843, 1485, 1991
Bse8I GATNNNNATC 1 cut(s) 2406
BseAI TCCGGA 1 cut(s) 2370
BseBI CCWGG 3 cut(s) 235, 1519, 1533
BseGI GGATG 3 cut(s) 675, 1448, 2083
BseJI GATNNNNATC 1 cut(s) 2406
BseMI GCAATG 3 cut(s) 843, 1485, 1991
BseMII CTCAG 2 cut(s) 672, 2454
BseNI ACTGG 5 cut(s) 536, 1512, 1957, 2059, 2338
BsePI GCGCGC 1 cut(s) 1356
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 6 cut(s) 58, 697, 747, 1296, 1342, 1991
BseYI CCCAGC 1 cut(s) 1176
BsgI GTGCAG 6 cut(s) 541, 1209, 1480, 1998, 2299, 2397
Bsh1236I CGCG 1 cut(s) 1358
BshFI GGCC 7 cut(s) 76, 151, 793, 1435, 1522, 1623, 1956
BshNI GGYRCC 3 cut(s) 868, 949, 1591
BsiHKAI GWGCWC 2 cut(s) 497, 1142
BsiHKCI CYCGRG 4 cut(s) 41, 179, 821, 2139
BslFI GGGAC 2 cut(s) 2114, 2328
BsmAI GTCTC 6 cut(s) 437, 1082, 1507, 1724, 1939, 2316
BsmBI CGTCTC 3 cut(s) 437, 1082, 1724
BsmFI GGGAC 2 cut(s) 2114, 2328
BsnI GGCC 7 cut(s) 76, 151, 793, 1435, 1522, 1623, 1956
BsoBI CYCGRG 4 cut(s) 41, 179, 821, 2139
Bsp1286I GDGCHC 3 cut(s) 497, 1142, 1223
Bsp13I TCCGGA 1 cut(s) 2370
Bsp19I CCATGG 2 cut(s) 331, 976
BspACI CCGC 5 cut(s) 738, 1595, 1711, 2132, 2281
BspANI GGCC 7 cut(s) 76, 151, 793, 1435, 1522, 1623, 1956
BspCNI CTCAG 2 cut(s) 673, 2453
BspEI TCCGGA 1 cut(s) 2370
BspFNI CGCG 1 cut(s) 1358
BspLI GGNNCC 7 cut(s) 513, 870, 951, 1158, 1593, 1800, 2409
BspMAI CTGCAG 2 cut(s) 426, 1870
BspMI ACCTGC 3 cut(s) 87, 1371, 2396
BspPI GGATC 7 cut(s) 748, 881, 1049, 1691, 1932, 2402, 2415
BspQI GCTCTTC 1 cut(s) 1274
BspT107I GGYRCC 3 cut(s) 868, 949, 1591
BsrDI GCAATG 3 cut(s) 843, 1485, 1991
BsrI ACTGG 5 cut(s) 536, 1512, 1957, 2059, 2338
BssHII GCGCGC 1 cut(s) 1356
BssNI GRCGYC 2 cut(s) 36, 1320
BssT1I CCWWGG 5 cut(s) 168, 331, 810, 976, 1452
Bst2UI CCWGG 3 cut(s) 235, 1519, 1533
Bst6I CTCTTC 3 cut(s) 1206, 1274, 1301
BstACI GRCGYC 2 cut(s) 36, 1320
BstAPI GCANNNNNTGC 2 cut(s) 1865, 2104
BstC8I GCNNGC 7 cut(s) 59, 63, 338, 983, 1358, 1599, 2480
BstDEI CTNAG 5 cut(s) 445, 681, 862, 1742, 2440
BstDSI CCRYGG 5 cut(s) 70, 331, 507, 976, 1152
BstF5I GGATG 3 cut(s) 675, 1448, 2083
BstFNI CGCG 1 cut(s) 1358
BstH2I RGCGCY 3 cut(s) 974, 1011, 2479
BstHHI GCGC 8 cut(s) 258, 836, 903, 973, 1010, 1358, 1360, 2478
BstMAI GTCTC 6 cut(s) 437, 1082, 1507, 1724, 1939, 2316
BstMWI GCNNNNNNNGC 9 cut(s) 33, 137, 311, 672, 956, 1598, 1865, 2104, 2260
BstNI CCWGG 3 cut(s) 235, 1519, 1533
BstNSI RCATGY 2 cut(s) 587, 1232
BstSCI CCNGG 4 cut(s) 233, 1517, 1531, 2073
BstSFI CTRYAG 7 cut(s) 240, 422, 882, 1524, 1866, 1983, 2145
BstUI CGCG 1 cut(s) 1358
BstV1I GCAGC 6 cut(s) 58, 697, 747, 1296, 1342, 1991
BstV2I GAAGAC 2 cut(s) 1583, 1955
BstX2I RGATCY 4 cut(s) 740, 886, 1924, 2407
BstYI RGATCY 4 cut(s) 740, 886, 1924, 2407
BsuI GTATCC 1 cut(s) 1065
BsuRI GGCC 7 cut(s) 76, 151, 793, 1435, 1522, 1623, 1956
BtgI CCRYGG 5 cut(s) 70, 331, 507, 976, 1152
BtgZI GCGATG 2 cut(s) 641, 2171
BtrI CACGTC 1 cut(s) 2417
BtsCI GGATG 3 cut(s) 675, 1448, 2083
BtsIMutI CAGTG 4 cut(s) 469, 529, 654, 1505
BveI ACCTGC 3 cut(s) 87, 1371, 2396
Cac8I GCNNGC 7 cut(s) 59, 63, 338, 983, 1358, 1599, 2480
CfoI GCGC 8 cut(s) 258, 836, 903, 973, 1010, 1358, 1360, 2478
Cfr13I GGNCC 4 cut(s) 74, 512, 1157, 1799
CseI GACGC 2 cut(s) 25, 1309
Csp6I GTAC 9 cut(s) 201, 474, 843, 869, 1119, 1485, 1761, 2034, 2071
CviQI GTAC 9 cut(s) 201, 474, 843, 869, 1119, 1485, 1761, 2034, 2071
DdeI CTNAG 5 cut(s) 445, 681, 862, 1742, 2440
DraIII CACNNNGTG 1 cut(s) 2301
DrdI GACNNNNNNGTC 1 cut(s) 1499
DseDI GACNNNNNNGTC 1 cut(s) 1499
EaeI YGGCCR 5 cut(s) 149, 791, 1433, 1621, 1954
Eam1104I CTCTTC 3 cut(s) 1206, 1274, 1301
EarI CTCTTC 3 cut(s) 1206, 1274, 1301
Eco130I CCWWGG 5 cut(s) 168, 331, 810, 976, 1452
Eco24I GRGCYC 1 cut(s) 1223
Eco32I GATATC 2 cut(s) 895, 2308
Eco47I GGWCC 3 cut(s) 512, 1157, 1799
Eco47III AGCGCT 1 cut(s) 2477
Eco57I CTGAAG 2 cut(s) 1230, 2480
Eco88I CYCGRG 4 cut(s) 41, 179, 821, 2139
EcoRI GAATTC 2 cut(s) 2177, 2291
EcoRII CCWGG 3 cut(s) 233, 1517, 1531
EcoRV GATATC 2 cut(s) 895, 2308
EcoT14I CCWWGG 5 cut(s) 168, 331, 810, 976, 1452
EcoT38I GRGCYC 1 cut(s) 1223
ErhI CCWWGG 5 cut(s) 168, 331, 810, 976, 1452
Esp3I CGTCTC 3 cut(s) 437, 1082, 1724
FalI AAGNNNNNCTT 2 cut(s) 2193, 2225
FaqI GGGAC 2 cut(s) 2114, 2328
FauI CCCGC 1 cut(s) 2139
FbaI TGATCA 1 cut(s) 1900
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 6 cut(s) 47, 686, 736, 1285, 1331, 1980
FokI GGATG 3 cut(s) 662, 1435, 2090
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 6 cut(s) 47, 686, 736, 1285, 1331, 1980
FspBI CTAG 2 cut(s) 317, 2094
FspI TGCGCA 3 cut(s) 257, 835, 902
GlaI GCGC 8 cut(s) 257, 835, 902, 972, 1009, 1357, 1359, 2477
GluI GCNGC 6 cut(s) 47, 686, 736, 1285, 1331, 1980
GsaI CCCAGC 1 cut(s) 1180
GsuI CTGGAG 1 cut(s) 2076
HaeII RGCGCY 3 cut(s) 974, 1011, 2479
HaeIII GGCC 7 cut(s) 76, 151, 793, 1435, 1522, 1623, 1956
HgaI GACGC 2 cut(s) 25, 1309
HhaI GCGC 8 cut(s) 258, 836, 903, 973, 1010, 1358, 1360, 2478
Hin1I GRCGYC 2 cut(s) 36, 1320
Hin6I GCGC 8 cut(s) 256, 834, 901, 971, 1008, 1356, 1358, 2476
HinP1I GCGC 8 cut(s) 256, 834, 901, 971, 1008, 1356, 1358, 2476
HincII GTYRAC 3 cut(s) 780, 1492, 2385
HindII GTYRAC 3 cut(s) 780, 1492, 2385
HindIII AAGCTT 6 cut(s) 144, 278, 786, 1001, 1428, 1643
HphI GGTGA 4 cut(s) 222, 470, 1115, 1975
Hpy166II GTNNAC 5 cut(s) 240, 780, 1492, 1966, 2385
Hpy8I GTNNAC 5 cut(s) 240, 780, 1492, 1966, 2385
Hpy99I CGWCG 1 cut(s) 2421
HpyAV CCTTC 5 cut(s) 397, 535, 1180, 2195, 2227
HpyCH4IV ACGT 5 cut(s) 430, 1075, 1717, 1883, 2416
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 137, 311, 672, 956, 1598, 1865, 2104, 2260
HpyF3I CTNAG 5 cut(s) 445, 681, 862, 1742, 2440
HpySE526I ACGT 5 cut(s) 430, 1075, 1717, 1883, 2416
Hsp92I GRCGYC 2 cut(s) 36, 1320
HspAI GCGC 8 cut(s) 256, 834, 901, 971, 1008, 1356, 1358, 2476
Kpn2I TCCGGA 1 cut(s) 2370
KpnI GGTACC 1 cut(s) 872
Ksp22I TGATCA 1 cut(s) 1900
LguI GCTCTTC 1 cut(s) 1274
LmnI GCTCC 5 cut(s) 446, 978, 1091, 1733, 2057
Lsp1109I GCAGC 6 cut(s) 58, 697, 747, 1296, 1342, 1991
LweI GCATC 3 cut(s) 684, 2068, 2107
MaeI CTAG 2 cut(s) 317, 2094
MaeII ACGT 5 cut(s) 430, 1075, 1717, 1883, 2416
MaeIII GTNAC 2 cut(s) 1987, 2038
MflI RGATCY 4 cut(s) 740, 886, 1924, 2407
MhlI GDGCHC 3 cut(s) 497, 1142, 1223
MlsI TGGCCA 2 cut(s) 1435, 1956
MluNI TGGCCA 2 cut(s) 1435, 1956
MlyI GAGTC 6 cut(s) 286, 583, 931, 1573, 2350, 2453
MmeI TCCRAC 1 cut(s) 783
MnlI CCTC 8 cut(s) 13, 50, 442, 963, 1821, 2006, 2356, 2367
Mox20I TGGCCA 2 cut(s) 1435, 1956
MroI TCCGGA 1 cut(s) 2370
MscI TGGCCA 2 cut(s) 1435, 1956
MseI TTAA 4 cut(s) 1091, 1733, 2028, 2247
Msp20I TGGCCA 2 cut(s) 1435, 1956
MspA1I CMGCKG 3 cut(s) 738, 1597, 1982
MspR9I CCNGG 4 cut(s) 235, 1519, 1533, 2075
MvaI CCWGG 3 cut(s) 235, 1519, 1533
MvnI CGCG 1 cut(s) 1358
MwoI GCNNNNNNNGC 9 cut(s) 33, 137, 311, 672, 956, 1598, 1865, 2104, 2260
NciI CCSGG 1 cut(s) 2075
NcoI CCATGG 2 cut(s) 331, 976
NlaIV GGNNCC 7 cut(s) 513, 870, 951, 1158, 1593, 1800, 2409
NmuCI GTSAC 2 cut(s) 1987, 2038
NsbI TGCGCA 3 cut(s) 257, 835, 902
NspI RCATGY 2 cut(s) 587, 1232
PaeR7I CTCGAG 1 cut(s) 41
PauI GCGCGC 1 cut(s) 1356
PciI ACATGT 2 cut(s) 583, 1228
PciSI GCTCTTC 1 cut(s) 1274
PfeI GAWTC 6 cut(s) 29, 209, 851, 1313, 2226, 2284
PkrI GCNGC 6 cut(s) 48, 687, 737, 1286, 1332, 1981
PleI GAGTC 6 cut(s) 286, 582, 931, 1573, 2349, 2452
PpsI GAGTC 6 cut(s) 286, 582, 931, 1573, 2349, 2452
PscI ACATGT 2 cut(s) 583, 1228
Psp6I CCWGG 3 cut(s) 233, 1517, 1531
PspFI CCCAGC 1 cut(s) 1176
PspGI CCWGG 3 cut(s) 233, 1517, 1531
PspN4I GGNNCC 7 cut(s) 513, 870, 951, 1158, 1593, 1800, 2409
PspPI GGNCC 4 cut(s) 74, 512, 1157, 1799
PspXI VCTCGAGB 1 cut(s) 41
PstI CTGCAG 2 cut(s) 426, 1870
PsuI RGATCY 4 cut(s) 740, 886, 1924, 2407
PteI GCGCGC 1 cut(s) 1356
PvuII CAGCTG 1 cut(s) 1982
RsaI GTAC 9 cut(s) 202, 475, 844, 870, 1120, 1486, 1762, 2035, 2072
RsaNI GTAC 9 cut(s) 201, 474, 843, 869, 1119, 1485, 1761, 2034, 2071
SapI GCTCTTC 1 cut(s) 1274
SaqAI TTAA 4 cut(s) 1091, 1733, 2028, 2247
SatI GCNGC 6 cut(s) 47, 686, 736, 1285, 1331, 1980
Sau96I GGNCC 4 cut(s) 74, 512, 1157, 1799
SchI GAGTC 6 cut(s) 286, 583, 931, 1573, 2350, 2453
ScrFI CCNGG 4 cut(s) 235, 1519, 1533, 2075
SduI GDGCHC 3 cut(s) 497, 1142, 1223
SfaNI GCATC 3 cut(s) 684, 2068, 2107
SfcI CTRYAG 7 cut(s) 240, 422, 882, 1524, 1866, 1983, 2145
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 3 cut(s) 512, 1157, 1799
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 41, 1325
SmoI CTYRAG 2 cut(s) 41, 1325
SsiI CCGC 5 cut(s) 738, 1595, 1711, 2132, 2281
SspMI CTAG 2 cut(s) 317, 2094
StyD4I CCNGG 4 cut(s) 233, 1517, 1531, 2073
StyI CCWWGG 5 cut(s) 168, 331, 810, 976, 1452
TaiI ACGT 5 cut(s) 433, 1078, 1720, 1886, 2419
TaqI TCGA 7 cut(s) 42, 89, 769, 1722, 2184, 2287, 2447
TatI WGTACW 3 cut(s) 473, 1118, 1760
TfiI GAWTC 6 cut(s) 29, 209, 851, 1313, 2226, 2284
Tru1I TTAA 4 cut(s) 1091, 1733, 2028, 2247
Tru9I TTAA 4 cut(s) 1091, 1733, 2028, 2247
TscAI CASTG 4 cut(s) 476, 536, 654, 1512
TseFI GTSAC 2 cut(s) 1987, 2038
TseI GCWGC 6 cut(s) 46, 685, 735, 1284, 1330, 1979
Tsp45I GTSAC 2 cut(s) 1987, 2038
TspGWI ACGGA 5 cut(s) 95, 737, 1356, 2312, 2420
TspRI CASTG 4 cut(s) 476, 536, 654, 1512
VpaK11BI GGWCC 3 cut(s) 512, 1157, 1799
XceI RCATGY 2 cut(s) 587, 1232
XcmI CCANNNNNNNNNTGG 3 cut(s) 220, 528, 862
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 2 cut(s) 317, 2094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.