Rw5G009500

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000145
Physical Location & Seq
Reverse (-)
10195354 .. 10197732
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009500.1

Sequence Viewer

Length: 651 bp
ATGTCGGAAGATTACCCAAACGCCATTGCTCTGCAGCTCGAGGAGGCTCTGATGGTCCAAGATGAAATTGAGGTCGTCTCTTACACCAAGTTCTGCGATCGATTCCTTGACACAGACTTGCTGCAAAAAACTTGGCCTCTAGTGGAGTCGTGTTTAAGCAAGCATGGCGTTTTGTGCACACTGGATCTGGTATGTGGTAATATGAAGGTCTCTAAAACTAAAAGGGCTGAAGATGAAGACATAATTTTCAAGGCAATTGATATTTTGCAGCTTTTGTCGAGAAGTGTTCCAGCACGTTGGGCAATACGAACGCTGGATTGCAGTTGGCAACATGAGATCATCAAGATTGGGAATCAAGAAGGGGGGATTTGCAACATATTTGGGATCAGTAAGGTGGGTATTACATGTTTCCTTCCTCTCTTTATTATTTTTTTCCTTCCCTTTTCTGCAGCAGGTGGAAATACCATTGCTGTTATTGGTCCACTGCAAGGAATAAAGACGATAACAAAGATTGTGGAAGACTGCATCGCTCATAATGTGCCTCCTGCACCCCGTGTGCGGAGGATTAAAAAGAAGACTCAACTGATGAAGGATGCGAGAATTAAAATGACAAGTGAAGTGATGATGAGTCTCGAGGCTTTTCATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.23

Weight (kDa)

6.88

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 39 - 105 5.6e-11 Krr1 KH1 domain
KH_KRR1_2nd PF21800 152 - 197 1.1e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 443
AciI CCGC 1 cut(s) 559
AclWI GGATC 2 cut(s) 192, 392
AcuI CTGAAG 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 488, 558
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 2 cut(s) 37, 271
AluI AGCT 2 cut(s) 37, 271
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 3 cut(s) 82, 214, 635
Alw44I GTGCAC 1 cut(s) 175
AlwI GGATC 2 cut(s) 192, 392
Ama87I CYCGRG 2 cut(s) 38, 632
AoxI GGCC 1 cut(s) 134
ApaLI GTGCAC 1 cut(s) 175
ApeKI GCWGC 4 cut(s) 34, 121, 268, 449
AspS9I GGNCC 2 cut(s) 55, 479
AvaI CYCGRG 2 cut(s) 38, 632
AvaII GGWCC 2 cut(s) 55, 479
BaeGI GKGCMC 1 cut(s) 179
BbsI GAAGAC 3 cut(s) 243, 525, 581
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 46, 108, 280, 461
BccI CCATC 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 82, 214, 635
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 32, 447
BfuAI ACCTGC 1 cut(s) 443
BisI GCNGC 4 cut(s) 35, 122, 269, 450
BlsI GCNGC 4 cut(s) 36, 123, 270, 451
Bme18I GGWCC 2 cut(s) 55, 479
BmeT110I CYCGRG 2 cut(s) 38, 632
BmgT120I GGNCC 2 cut(s) 55, 479
BmsI GCATC 2 cut(s) 534, 583
BpiI GAAGAC 3 cut(s) 243, 525, 581
BplI GAGNNNNNCTC 2 cut(s) 62, 94
Bsa29I ATCGAT 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 558
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 24, 465
BseCI ATCGAT 1 cut(s) 100
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 488, 558
BseMI GCAATG 2 cut(s) 24, 465
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 4 cut(s) 46, 108, 280, 461
BsgI GTGCAG 1 cut(s) 531
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 38, 632
BslI CCNNNNNNNGG 2 cut(s) 488, 558
BsmAI GTCTC 3 cut(s) 82, 214, 635
BsmBI CGTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 2 cut(s) 38, 632
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 97, 184, 336, 384
BspACI CCGC 1 cut(s) 559
BspANI GGCC 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 100
BspMAI CTGCAG 2 cut(s) 36, 451
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 2 cut(s) 192, 392
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 24, 465
BsrI ACTGG 1 cut(s) 186
BssMI GATC 4 cut(s) 97, 184, 336, 384
BstC8I GCNNGC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 4 cut(s) 100, 187, 339, 387
BstMAI GTCTC 3 cut(s) 82, 214, 635
BstMBI GATC 4 cut(s) 97, 184, 336, 384
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 165, 174, 299
BstNSI RCATGY 1 cut(s) 408
BstSFI CTRYAG 2 cut(s) 32, 447
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 4 cut(s) 46, 108, 280, 461
BstV2I GAAGAC 3 cut(s) 243, 525, 581
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 100
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 511
BtsCI GGATG 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 2 cut(s) 179, 482
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 55, 479
ClaI ATCGAT 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 4 cut(s) 164, 332, 405, 644
CviJI RGCY 6 cut(s) 37, 47, 136, 227, 271, 638
CviKI_1 RGCY 6 cut(s) 37, 47, 136, 227, 271, 638
DpnI GATC 4 cut(s) 99, 186, 338, 386
DpnII GATC 4 cut(s) 97, 184, 336, 384
DraIII CACNNNGTG 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 55, 479
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 38, 632
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 4 cut(s) 167, 335, 408, 647
FaiI YATR 9 cut(s) 165, 193, 203, 242, 333, 377, 406, 534, 645
FatI CATG 4 cut(s) 163, 331, 404, 643
Fnu4HI GCNGC 4 cut(s) 35, 122, 269, 450
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 4 cut(s) 35, 122, 269, 450
FspBI CTAG 1 cut(s) 140
GluI GCNGC 4 cut(s) 35, 122, 269, 450
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 4 cut(s) 167, 335, 408, 647
HinfI GANTC 5 cut(s) 102, 146, 352, 577, 628
Hpy166II GTNNAC 2 cut(s) 177, 482
Hpy188I TCNGA 3 cut(s) 7, 51, 650
Hpy188III TCNNGA 4 cut(s) 279, 343, 356, 632
Hpy8I GTNNAC 2 cut(s) 177, 482
HpyAV CCTTC 5 cut(s) 199, 353, 422, 446, 583
HpyCH4IV ACGT 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 174, 299
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 4 cut(s) 167, 335, 408, 647
Kzo9I GATC 4 cut(s) 97, 184, 336, 384
LpnPI CCDG 6 cut(s) 167, 173, 299, 303, 438, 558
Lsp1109I GCAGC 4 cut(s) 46, 108, 280, 461
LweI GCATC 2 cut(s) 534, 583
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 295
MalI GATC 4 cut(s) 99, 186, 338, 386
MboI GATC 4 cut(s) 97, 184, 336, 384
MboII GAAGA 5 cut(s) 20, 242, 248, 530, 586
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 4 cut(s) 66, 243, 255, 600
MlyI GAGTC 3 cut(s) 155, 571, 637
MnlI CCTC 8 cut(s) 34, 37, 64, 147, 426, 552, 555, 628
MseI TTAA 3 cut(s) 155, 567, 603
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 165, 174, 299
NdeII GATC 4 cut(s) 97, 184, 336, 384
NlaIII CATG 4 cut(s) 167, 335, 408, 647
NspI RCATGY 1 cut(s) 408
PaeR7I CTCGAG 2 cut(s) 38, 632
PaqCI CACCTGC 1 cut(s) 443
PciI ACATGT 1 cut(s) 404
PfeI GAWTC 2 cut(s) 102, 352
PkrI GCNGC 4 cut(s) 36, 123, 270, 451
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 3 cut(s) 154, 571, 636
PpsI GAGTC 3 cut(s) 154, 571, 636
PscI ACATGT 1 cut(s) 404
PspPI GGNCC 2 cut(s) 55, 479
PspXI VCTCGAGB 1 cut(s) 38
PstI CTGCAG 2 cut(s) 36, 451
PsuI RGATCY 1 cut(s) 184
PvuI CGATCG 1 cut(s) 100
SaqAI TTAA 3 cut(s) 155, 567, 603
SatI GCNGC 4 cut(s) 35, 122, 269, 450
Sau3AI GATC 4 cut(s) 97, 184, 336, 384
Sau96I GGNCC 2 cut(s) 55, 479
SchI GAGTC 3 cut(s) 155, 571, 637
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 39, 75, 210, 273, 298, 396, 457
SfaNI GCATC 2 cut(s) 534, 583
SfcI CTRYAG 2 cut(s) 32, 447
Sfr274I CTCGAG 2 cut(s) 38, 632
SinI GGWCC 2 cut(s) 55, 479
SlaI CTCGAG 2 cut(s) 38, 632
SmlI CTYRAG 2 cut(s) 38, 632
SmoI CTYRAG 2 cut(s) 38, 632
Sse9I AATT 4 cut(s) 66, 243, 255, 600
SsiI CCGC 1 cut(s) 559
SspMI CTAG 1 cut(s) 140
TaiI ACGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 39, 100, 278, 633
TasI AATT 4 cut(s) 66, 243, 255, 600
TfiI GAWTC 2 cut(s) 102, 352
Tru1I TTAA 3 cut(s) 155, 567, 603
Tru9I TTAA 3 cut(s) 155, 567, 603
TscAI CASTG 2 cut(s) 186, 489
TseI GCWGC 4 cut(s) 34, 121, 268, 449
TspDTI ATGAA 5 cut(s) 78, 218, 249, 602, 632
TspRI CASTG 2 cut(s) 186, 489
VneI GTGCAC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 55, 479
XceI RCATGY 1 cut(s) 408
XhoI CTCGAG 2 cut(s) 38, 632
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.