Rroxscaffold_3G00265870

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000145
Physical Location & Seq
Forward (+)
59266892 .. 59269053
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265870.1

Sequence Viewer

Length: 252 bp
ATGACTGTCTCAACCACCCCAAGGACCGAAGATCCAAACATCATGCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTACTGTTCCGACATATGTGGTAATTAATATACTGAATGGCTATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGGTGGGCTTGCCGCAATACATGGGATCAAGAAGGAGCAATTTGCGAAACGGAGGACCAGATTCTTGGAAAACCTAAAGGACCATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

9.69

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclWI GGATC 2 cut(s) 26, 194
AfiI CCNNNNNNNGG 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 26, 194
AseI ATTAAT 1 cut(s) 108
AspS9I GGNCC 3 cut(s) 24, 216, 241
AvaII GGWCC 3 cut(s) 24, 216, 241
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme18I GGWCC 3 cut(s) 24, 216, 241
BmgT120I GGNCC 3 cut(s) 24, 216, 241
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 31, 186
BspACI CCGC 1 cut(s) 174
BspHI TCATGA 1 cut(s) 133
BspPI GGATC 2 cut(s) 26, 194
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 31, 186
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 7, 88
BstC8I GCNNGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 34, 189
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 31, 186
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 24, 216, 241
CviAII CATG 4 cut(s) 43, 134, 182, 245
CviJI RGCY 3 cut(s) 53, 123, 169
CviKI_1 RGCY 3 cut(s) 53, 123, 169
DpnI GATC 2 cut(s) 33, 188
DpnII GATC 2 cut(s) 31, 186
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 24, 216, 241
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 46, 137, 185, 248
FaiI YATR 9 cut(s) 44, 97, 99, 113, 126, 128, 135, 183, 246
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 4 cut(s) 42, 133, 181, 244
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 46, 137, 185, 248
HinfI GANTC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 3 cut(s) 134, 158, 190
HpyAV CCTTC 2 cut(s) 155, 187
HpyCH4III ACNGT 2 cut(s) 7, 88
HpyCH4V TGCA 2 cut(s) 46, 130
Hsp92II CATG 4 cut(s) 46, 137, 185, 248
Kzo9I GATC 2 cut(s) 31, 186
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 3 cut(s) 34, 135, 232
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 54
MalI GATC 2 cut(s) 33, 188
MboI GATC 2 cut(s) 31, 186
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 31
MluCI AATT 2 cut(s) 105, 200
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 132
MseI TTAA 1 cut(s) 108
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 31, 186
NlaIII CATG 4 cut(s) 46, 137, 185, 248
NsiI ATGCAT 1 cut(s) 132
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 108
PspPI GGNCC 3 cut(s) 24, 216, 241
PsuI RGATCY 1 cut(s) 31
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 31, 186
Sau96I GGNCC 3 cut(s) 24, 216, 241
SetI ASST 2 cut(s) 166, 237
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 3 cut(s) 24, 216, 241
Sse9I AATT 2 cut(s) 105, 200
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 7, 88
TaqII GACCGA 1 cut(s) 41
TasI AATT 2 cut(s) 105, 200
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 24, 216, 241
VspI ATTAAT 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.