FvH4_3g45301

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000145
Physical Location & Seq
Reverse (-)
37612182 .. 37612850
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45301.t1

Sequence Viewer

Length: 576 bp
ATGTTGTACGATTACCCAAATACCATTGTTCTGGAGCTCGAGGAGGCTATCCCTTTGATGATCAACGATGCCATTGAAGTCATCTCCTACATCAGGTTCTACGATGAATTCCTAAACACAGACGTGCTGCAAAAAACTTGGCCGATAGTGGAGTCGAGTAAAGGGAGCATGGTGTCTTGTGCACGCGAAGTGTTCCAGCAAGATGGGCAATACGAACATGAGATCATCAAAATTGGGAATCTAGAAGGGGGGATTTGCGATTTGTTTGGGATCAATAATGAGCAATTTCTTGCACGGAGGAATCTTCTCGTTGGTGTCATACAGGAGCTTTTTGAGCTAGCTGGCTGTGGCATTTTTCTTAAGGGAAACACCATTGCTGTTATTGGTTCGCTGCAAGGAATAAAGATGATAACAAAGATTGTGGAAGACTGCATTGCTCATGATGTGCCTCCTGCCCCCCGTGCGAGGAGGATTAAGAAGAAGACTCGACCGAAGAAGGATGCGAGGATTAAAATGACAAGTGAAGTGATGATGAGTCTCGCTCGAAGCATTGTGTGTGTGTCTGAATTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.5

Weight (kDa)

5.52

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 91 - 153 1.2e-10 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 186
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 93, 465
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 77
AjiI CACGTC 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 4 cut(s) 37, 328, 337, 341
AluI AGCT 4 cut(s) 37, 328, 337, 341
Alw21I GWGCWC 2 cut(s) 39, 184
Alw26I GTCTC 1 cut(s) 542
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 127, 391
ApoI RAATTY 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 432, 488
Bbv12I GWGCWC 2 cut(s) 39, 184
BbvI GCAGC 2 cut(s) 114, 378
BccI CCATC 1 cut(s) 197
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 242, 338
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 2 cut(s) 128, 392
BlsI GCNGC 2 cut(s) 129, 393
BmeT110I CYCGRG 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 124
BmsI GCATC 2 cut(s) 58, 490
BmtI GCTAGC 1 cut(s) 341
BpiI GAAGAC 2 cut(s) 432, 488
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 53
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 465
Bse3DI GCAATG 2 cut(s) 372, 432
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 2 cut(s) 93, 465
BseMI GCAATG 2 cut(s) 372, 432
BseRI GAGGAG 2 cut(s) 56, 481
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 114, 378
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 39, 184
BsiHKCI CYCGRG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 93, 465
BsmAI GTCTC 1 cut(s) 542
BsnI GGCC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 39, 184
Bsp143I GATC 3 cut(s) 60, 222, 270
BspANI GGCC 1 cut(s) 142
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 372, 432
BssMI GATC 3 cut(s) 60, 222, 270
BstAFI CTTAAG 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 184, 339, 343
BstENI CCTNNNNNAGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 3 cut(s) 63, 225, 273
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 60, 222, 270
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 205, 334, 461
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 114, 378
BstV2I GAAGAC 2 cut(s) 432, 488
BstXI CCANNNNNNTGG 2 cut(s) 31, 203
BsuRI GGCC 1 cut(s) 142
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 184, 339, 343
CciI TCATGA 1 cut(s) 439
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 3 cut(s) 169, 218, 440
CviJI RGCY 7 cut(s) 37, 47, 142, 328, 337, 341, 345
CviKI_1 RGCY 7 cut(s) 37, 47, 142, 328, 337, 341, 345
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 62, 224, 272
DpnII GATC 3 cut(s) 60, 222, 270
EaeI YGGCCR 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 3 cut(s) 172, 221, 443
FaiI YATR 5 cut(s) 170, 219, 320, 441, 574
FatI CATG 3 cut(s) 168, 217, 439
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 128, 392
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 128, 392
FspBI CTAG 2 cut(s) 242, 338
GluI GCNGC 2 cut(s) 128, 392
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 142
Hin1II CATG 3 cut(s) 172, 221, 443
HinfI GANTC 5 cut(s) 152, 238, 301, 484, 535
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 3 cut(s) 32, 242, 440
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 239, 490
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 130, 182, 293, 394, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 334, 461
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 172, 221, 443
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 222, 270
LmnI GCTCC 3 cut(s) 34, 165, 325
LpnPI CCDG 6 cut(s) 17, 79, 209, 308, 327, 465
Lsp1109I GCAGC 2 cut(s) 114, 378
LweI GCATC 2 cut(s) 58, 490
MaeI CTAG 2 cut(s) 242, 338
MaeII ACGT 1 cut(s) 123
MalI GATC 3 cut(s) 62, 224, 272
MboI GATC 3 cut(s) 60, 222, 270
MboII GAAGA 5 cut(s) 296, 437, 490, 493, 505
MhlI GDGCHC 2 cut(s) 39, 184
MluCI AATT 4 cut(s) 107, 231, 284, 566
MlyI GAGTC 3 cut(s) 161, 478, 544
MnlI CCTC 7 cut(s) 34, 37, 291, 459, 459, 462, 498
MseI TTAA 3 cut(s) 360, 474, 510
MslI CAYNNNNRTG 1 cut(s) 122
MspCI CTTAAG 1 cut(s) 359
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 205, 334, 461
NdeII GATC 3 cut(s) 60, 222, 270
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 3 cut(s) 172, 221, 443
OliI CACNNNNGTG 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 38
PagI TCATGA 1 cut(s) 439
PfeI GAWTC 2 cut(s) 238, 301
PkrI GCNGC 2 cut(s) 129, 393
PleI GAGTC 3 cut(s) 160, 478, 543
PpsI GAGTC 3 cut(s) 160, 478, 543
Psp124BI GAGCTC 1 cut(s) 39
PspXI VCTCGAGB 1 cut(s) 38
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 360, 474, 510
SatI GCNGC 2 cut(s) 128, 392
Sau3AI GATC 3 cut(s) 60, 222, 270
SchI GAGTC 3 cut(s) 161, 478, 544
SduI GDGCHC 2 cut(s) 39, 184
SetI ASST 6 cut(s) 39, 98, 126, 330, 339, 343
SfaNI GCATC 2 cut(s) 58, 490
Sfr274I CTCGAG 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 38, 359
SmoI CTYRAG 2 cut(s) 38, 359
Sse9I AATT 4 cut(s) 107, 231, 284, 566
SspMI CTAG 2 cut(s) 242, 338
SstI GAGCTC 1 cut(s) 39
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 39, 155, 487, 544
TaqII GACCGA 1 cut(s) 505
TasI AATT 4 cut(s) 107, 231, 284, 566
TfiI GAWTC 2 cut(s) 238, 301
Tru1I TTAA 3 cut(s) 360, 474, 510
Tru9I TTAA 3 cut(s) 360, 474, 510
TseI GCWGC 2 cut(s) 127, 391
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 91
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 2 cut(s) 242, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.