Rmu_co8324735.1_g000001

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8324735.1
OG0000145
Physical Location & Seq
Reverse (-)
1 .. 910
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8324735.1_g000001.1.cds

Sequence Viewer

Length: 864 bp
atgcgcaaggctaattatcttttccagcttttattcaagactcctgttccggcacctctggcgatagagttggcgctccatggcaggcaacatgatctcatcaagcttggcgctcaaaagggtgggatatgcaaaaaatatgggatcaacaaggagaaatttgataaactgtggatacgtctcaaacgctccttaaaggaacttggtgatctgacccattgtactctatttttgaacaagagcactcttactgctgtgggtccatctccaagattacacttggtcaggagggttttggaaatctgtataaaaagaaagataagtcctgcagatgttattagcacgttgatatgcaagtatgatcaaaaaatttcatttgttcgggatcttgatgtctctaatgtcaagaagactggccatttggtgaacaaagatggtgcagctgaagtgacattgccctttcttgaaagacgagcaacaaggatggaaggagctttgtcaatggtggagtcatcttttgagaaatatggcatttcttgcacactgaatctgattaagcgtaccgtgactatctcaacaactggagcgaccaaagagtacccggatgcttttgagaaagctaggcatcttttgcaacttttgacaacaactaatgtcccgccatctcgggctgtagaattagcgatgaatggcatgaagcatgaattcatcgagatcgggtttcaagaaggtgggctttgctcattgtatggaatcaagaaggaacaatatgttaaacggcgtaaatggctcattcgttctgcgaagcggattcgagaattcacggagtgtgatatctactgcacaggagacactattaccggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.61

Weight (kDa)

9.69

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 2 cut(s) 659, 808
AclWI GGATC 2 cut(s) 152, 393
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 4 cut(s) 158, 369, 704, 818
AcuI CTGAAG 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 828
AfaI GTAC 3 cut(s) 223, 562, 599
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 4 cut(s) 37, 235, 467, 725
AluBI AGCT 5 cut(s) 28, 106, 443, 494, 620
AluI AGCT 5 cut(s) 28, 106, 443, 494, 620
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 185, 400, 843
AlwI GGATC 2 cut(s) 152, 393
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 158, 369, 704, 818
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AsiGI ACCGGT 1 cut(s) 860
AspLEI GCGC 3 cut(s) 6, 76, 113
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 218, 436
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 452
BccI CCATC 4 cut(s) 271, 428, 478, 670
BceAI ACGGC 1 cut(s) 794
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 185, 400, 843
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 327, 672
BfoI RGCGCY 2 cut(s) 77, 114
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 54, 261
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 595, 634
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 860
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 2 cut(s) 418, 586
Bse3DI GCAATG 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 2 cut(s) 489, 610
BseMI GCAATG 1 cut(s) 452
BseNI ACTGG 2 cut(s) 418, 586
BseXI GCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 459, 826
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 860
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 3 cut(s) 50, 602, 861
BslFI GGGAC 1 cut(s) 641
BsmAI GTCTC 3 cut(s) 185, 400, 843
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 6 cut(s) 94, 144, 208, 361, 385, 714
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 2 cut(s) 659, 808
BspANI GGCC 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 54, 261
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 2 cut(s) 152, 393
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 860
BsrI ACTGG 2 cut(s) 418, 586
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 6 cut(s) 94, 144, 208, 361, 385, 714
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 171, 565
BstAPI GCANNNNNTGC 2 cut(s) 537, 631
BstC8I GCNNGC 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 489, 610
BstH2I RGCGCY 2 cut(s) 77, 114
BstHHI GCGC 3 cut(s) 6, 76, 113
BstKTI GATC 6 cut(s) 97, 147, 211, 364, 388, 717
BstMAI GTCTC 3 cut(s) 185, 400, 843
BstMBI GATC 6 cut(s) 94, 144, 208, 361, 385, 714
BstMWI GCNNNNNNNGC 4 cut(s) 59, 537, 631, 787
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 2 cut(s) 327, 672
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 698
BtsCI GGATG 2 cut(s) 489, 610
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 3 cut(s) 6, 76, 113
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 3 cut(s) 222, 561, 598
CspAI ACCGGT 1 cut(s) 860
CviAII CATG 4 cut(s) 80, 92, 694, 701
CviQI GTAC 3 cut(s) 222, 561, 598
DpnI GATC 6 cut(s) 96, 146, 210, 363, 387, 716
DpnII GATC 6 cut(s) 94, 144, 208, 361, 385, 714
DraIII CACNNNGTG 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 79
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 666
EcoRI GAATTC 2 cut(s) 704, 818
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 4 cut(s) 83, 95, 697, 704
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 1 cut(s) 641
FatI CATG 4 cut(s) 79, 91, 693, 700
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 2 cut(s) 496, 617
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 621
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 75, 112
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 2 cut(s) 77, 114
HaeIII GGCC 1 cut(s) 417
HapII CCGG 3 cut(s) 50, 602, 861
HhaI GCGC 3 cut(s) 6, 76, 113
Hin1II CATG 4 cut(s) 83, 95, 697, 704
Hin6I GCGC 3 cut(s) 4, 74, 111
HinP1I GCGC 3 cut(s) 4, 74, 111
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 5 cut(s) 40, 509, 547, 753, 811
HpaII CCGG 3 cut(s) 50, 602, 861
HphI GGTGA 2 cut(s) 218, 436
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 2 cut(s) 213, 552
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 482, 722, 754
HpyCH4III ACNGT 2 cut(s) 171, 565
HpyCH4IV ACGT 2 cut(s) 178, 344
HpyCH4V TGCA 7 cut(s) 132, 329, 354, 440, 540, 634, 843
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 537, 631, 787
HpySE526I ACGT 2 cut(s) 178, 344
Hsp92II CATG 4 cut(s) 83, 95, 697, 704
HspAI GCGC 3 cut(s) 4, 74, 111
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 6 cut(s) 94, 144, 208, 361, 385, 714
LmnI GCTCC 4 cut(s) 81, 194, 491, 584
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 595, 634
MaeI CTAG 1 cut(s) 621
MaeII ACGT 2 cut(s) 178, 344
MaeIII GTNAC 2 cut(s) 448, 565
MalI GATC 6 cut(s) 96, 146, 210, 363, 387, 716
MboI GATC 6 cut(s) 94, 144, 208, 361, 385, 714
MboII GAAGA 1 cut(s) 421
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 6 cut(s) 13, 158, 369, 677, 704, 818
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 2 cut(s) 34, 518
MnlI CCTC 2 cut(s) 66, 282
Mox20I TGGCCA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 417
MseI TTAA 3 cut(s) 194, 555, 774
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 50, 602, 861
MspR9I CCNGG 1 cut(s) 602
MwoI GCNNNNNNNGC 4 cut(s) 59, 537, 631, 787
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 79
NdeII GATC 6 cut(s) 94, 144, 208, 361, 385, 714
NlaIII CATG 4 cut(s) 83, 95, 697, 704
NlaIV GGNNCC 2 cut(s) 54, 261
NmuCI GTSAC 2 cut(s) 448, 565
NsbI TGCGCA 1 cut(s) 5
PfeI GAWTC 3 cut(s) 547, 753, 811
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 34, 517
PpsI GAGTC 2 cut(s) 34, 517
PspN4I GGNNCC 2 cut(s) 54, 261
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 223, 562, 599
RsaNI GTAC 3 cut(s) 222, 561, 598
SaqAI TTAA 3 cut(s) 194, 555, 774
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 6 cut(s) 94, 144, 208, 361, 385, 714
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 2 cut(s) 34, 518
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 1 cut(s) 245
SetI ASST 9 cut(s) 30, 58, 108, 181, 347, 445, 496, 622, 733
SfaNI GCATC 2 cut(s) 595, 634
SfcI CTRYAG 2 cut(s) 327, 672
SinI GGWCC 1 cut(s) 260
Sse9I AATT 6 cut(s) 13, 158, 369, 677, 704, 818
SsiI CCGC 2 cut(s) 659, 808
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 171, 565
TaiI ACGT 2 cut(s) 181, 347
TaqI TCGA 2 cut(s) 711, 814
TasI AATT 6 cut(s) 13, 158, 369, 677, 704, 818
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 3 cut(s) 547, 753, 811
Tru1I TTAA 3 cut(s) 194, 555, 774
Tru9I TTAA 3 cut(s) 194, 555, 774
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 2 cut(s) 448, 565
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 448, 565
TspDTI ATGAA 5 cut(s) 363, 697, 701, 710, 717
TspGWI ACGGA 1 cut(s) 839
TspRI CASTG 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 4 cut(s) 158, 369, 704, 818
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.