Rh4AG341700

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000145
Physical Location & Seq
Reverse (-)
65046343 .. 65048526
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG341700.1

Sequence Viewer

Length: 291 bp
ATGGAGAACGACGAAAACGGCGCCTTTCAGAGGAAGCCGAAGGTGAAGGGCAAGCACGATAAGCCTAAGCCTTGGGACGATGACCCCAACATCGACCGCTGGAAGATAGAGAAGTTTGACCCTTCCTGGAACGAGGGCGGCATGCTTGACGCAATAAAAGTGCTGAATGATGAAATGCAATGTGACATAATCAAGATTAGCAGCTTGGTGAGAAGTAAGGAAAAATTTATAAAACGAAGGCAACGTCTTATTGGCCCCAATTCCTCCAGTTTAAAGGTGCATACACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.22

Weight (kDa)

9.3

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 59 - 93 4.2e-11 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 2 cut(s) 97, 138
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 30
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 55, 220
BanI GGYRCC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 2 cut(s) 139, 202
BlsI GCNGC 2 cut(s) 140, 203
Bme1390I CCNGG 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 22, 256
BmrFI CCNGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 255
BspACI CCGC 2 cut(s) 97, 138
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 22, 256
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 53, 143
BstDEI CTNAG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 53, 143
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 37, 64, 70, 204, 255
CviKI_1 RGCY 5 cut(s) 37, 64, 70, 204, 255
DdeI CTNAG 1 cut(s) 66
DinI GGCGCC 1 cut(s) 22
DraI TTTAAA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 145
FaiI YATR 4 cut(s) 143, 188, 230, 282
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 139, 202
Fsp4HI GCNGC 2 cut(s) 139, 202
FspBI CTAG 1 cut(s) 289
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 139, 202
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HphI GGTGA 2 cut(s) 55, 220
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 34, 40, 132, 231
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 178, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
LpnPI CCDG 4 cut(s) 85, 112, 139, 280
Lsp1109I GCAGC 1 cut(s) 213
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 1 cut(s) 115
MluCI AATT 2 cut(s) 224, 259
Mly113I GGCGCC 1 cut(s) 21
MnlI CCTC 3 cut(s) 24, 127, 274
MseI TTAA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 21
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 22, 256
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 2 cut(s) 140, 203
PluTI GGCGCC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 22, 256
PspPI GGNCC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 139, 202
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 127
SetI ASST 4 cut(s) 45, 206, 247, 279
SfoI GGCGCC 1 cut(s) 22
SphI GCATGC 1 cut(s) 145
Sse9I AATT 2 cut(s) 224, 259
SsiI CCGC 2 cut(s) 97, 138
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 71
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 224, 259
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 145
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.