Rh3DG203600

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000145
Physical Location & Seq
Reverse (-)
18608152 .. 18629233
21082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG203600.1

Sequence Viewer

Length: 480 bp
ATGGAGTTCGGCGCCGGTCACAAATCGAAGATGCCGTGCCCAAACTCCGACCACATGGAGTCGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACATACCAAAGTTGAAAGATGCTTGGCCGGAGGTGGAATCGGCTTTACAAGAGCATGGAATTTCTTACACACTCAATCTGGCTGAGCTTTACATGACTGTCTCAACCACCCCAAGGACCAAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTACTACTCCGACATATGTGGTAATTAAGATATTGAATGGCGATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGGTGGGCTTGCTGCAATACATGGGATCAAGAAGGTGGGTATTGCATTCTTCTTAGCTCTGCTGTCTTTGAAATTTTTTGCTGAACTTAATAAAGTAACATTTAAGCCTTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.89

Weight (kDa)

7.14

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 28 - 96 1.3e-13 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AclWI GGATC 2 cut(s) 227, 395
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 168, 434
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 3 cut(s) 124, 319, 433
AluBI AGCT 2 cut(s) 196, 419
AluI AGCT 2 cut(s) 196, 419
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 227, 395
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 168, 434
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 2 cut(s) 255, 478
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 375
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 3 cut(s) 21, 118, 340
BmuI ACTGGG 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 83, 115
Bpu1102I GCTNAGC 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 2 cut(s) 15, 137
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 232, 387
Bsp1720I GCTNAGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 184
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 2 cut(s) 227, 395
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 232, 387
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 192, 415
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 235, 390
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 232, 387
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 225
CviAII CATG 5 cut(s) 55, 164, 202, 335, 383
CviJI RGCY 8 cut(s) 136, 152, 191, 196, 254, 370, 419, 469
CviKI_1 RGCY 8 cut(s) 136, 152, 191, 196, 254, 370, 419, 469
DdeI CTNAG 2 cut(s) 192, 415
DinI GGCGCC 1 cut(s) 13
DpnI GATC 2 cut(s) 234, 389
DpnII GATC 2 cut(s) 232, 387
EaeI YGGCCR 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 5 cut(s) 58, 167, 205, 338, 386
FaiI YATR 9 cut(s) 56, 113, 165, 203, 298, 300, 329, 336, 384
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 5 cut(s) 54, 163, 201, 334, 382
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 2 cut(s) 255, 478
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 15, 137
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 58, 167, 205, 338, 386
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 3 cut(s) 59, 92, 146
HpaII CCGG 2 cut(s) 15, 137
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 49, 64, 73, 294
Hpy188III TCNNGA 4 cut(s) 236, 335, 359, 391
HpyAV CCTTC 3 cut(s) 94, 356, 388
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 331, 377, 407
HpyF3I CTNAG 2 cut(s) 192, 415
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 58, 167, 205, 338, 386
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 232, 387
LpnPI CCDG 6 cut(s) 28, 150, 173, 235, 249, 336
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 3 cut(s) 21, 118, 340
MaeI CTAG 2 cut(s) 255, 478
MaeIII GTNAC 3 cut(s) 17, 76, 457
MalI GATC 2 cut(s) 234, 389
MboI GATC 2 cut(s) 232, 387
MboII GAAGA 2 cut(s) 40, 403
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 3 cut(s) 168, 306, 434
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 68, 101
MmeI TCCRAC 3 cut(s) 42, 72, 317
MnlI CCTC 2 cut(s) 91, 133
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 3 cut(s) 309, 450, 465
MspI CCGG 2 cut(s) 15, 137
Mva1269I GAATGC 1 cut(s) 407
NarI GGCGCC 1 cut(s) 12
NdeI CATATG 1 cut(s) 298
NdeII GATC 2 cut(s) 232, 387
NlaIII CATG 5 cut(s) 58, 167, 205, 338, 386
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 17, 76
NsiI ATGCAT 1 cut(s) 333
PagI TCATGA 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 2 cut(s) 67, 100
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 67, 100
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 232
SaqAI TTAA 3 cut(s) 309, 450, 465
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 2 cut(s) 232, 387
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 2 cut(s) 68, 101
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 83, 144, 198, 367, 399, 421
SfaNI GCATC 3 cut(s) 21, 118, 340
SfoI GGCGCC 1 cut(s) 13
SinI GGWCC 1 cut(s) 225
Sse9I AATT 3 cut(s) 168, 306, 434
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 2 cut(s) 255, 478
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 168, 306, 434
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 309, 450, 465
Tru9I TTAA 3 cut(s) 309, 450, 465
TseFI GTSAC 2 cut(s) 17, 76
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 2 cut(s) 17, 76
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 2 cut(s) 168, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 2 cut(s) 255, 478
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.