Rh4AG341600

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000145
Physical Location & Seq
Reverse (-)
65044106 .. 65045792
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG341600.1

Sequence Viewer

Length: 504 bp
ATGGTGAGGAAAGAACTTGAAAAGGATCCAACACTTGCACTGGAGAACTGGGACAGATTTCTTCCAAAGTTCAATAAGAAAAATGTTAATCAACCCAAACCTAAGCAAAGTAAAAAGAAGAAGCCAGAATATACACCCATACCACCTCCTCAACCACCAAGCAAGGTTGACATACAATTGGCAACTGGAGAATACTTTCTGAGTGACAAAGTAAAATCGGAAAAGAAGTGGAAAGAGCAGCAGGAGAGACAAGCTGGAAAAACAGCAGAAAATAAGCGAAAAAGAGAAGCTGCTTTTGTTCCTCCAGAGGAGCCTGCAATACAGCATAACAAATCAGATGATGGTAACAAAGATGTCGCTGCCCTGGCCACGTCTCTGAAGAAAAAAGCAAAAGAGTACGGAAATCAAAAGTTGATTGAGAACGTAAATCCAGAAGCATATATTGCAGAATCTGGAGTACCTTCAAAAAAGAAATCCAAGAAATCCAAGGGCTCAAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

9.81

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 20, 33
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 2 cut(s) 398, 459
AgsI TTSAA 3 cut(s) 20, 73, 465
AjiI CACGTC 1 cut(s) 372
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 2 cut(s) 254, 290
AluI AGCT 2 cut(s) 254, 290
Alw26I GTCTC 2 cut(s) 241, 378
AlwI GGATC 2 cut(s) 20, 33
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 238, 290, 359
Asp700I GAANNNNTTC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 250, 277, 346
BccI CCATC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 241, 378
BisI GCNGC 3 cut(s) 239, 291, 360
BlsI GCNGC 3 cut(s) 240, 292, 361
Bme1390I CCNGG 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 27, 312
BmrFI CCNGG 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpmI CTGGAG 4 cut(s) 62, 207, 288, 474
Bpu10I CCTNAGC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 363, 486
Bse1I ACTGG 3 cut(s) 45, 53, 190
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 363, 486
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 3 cut(s) 45, 53, 190
BseRI GAGGAG 2 cut(s) 138, 323
BseXI GCAGC 3 cut(s) 250, 277, 346
BshFI GGCC 1 cut(s) 368
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 241, 378
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 27, 312
BspPI GGATC 2 cut(s) 20, 33
BsrI ACTGG 3 cut(s) 45, 53, 190
BssECI CCNNGG 2 cut(s) 363, 486
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 102, 200, 501
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 241, 378
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 365, 443
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 250, 277, 346
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 368
BtrI CACGTC 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 452
Csp6I GTAC 2 cut(s) 397, 458
CviJI RGCY 6 cut(s) 124, 254, 290, 313, 368, 492
CviKI_1 RGCY 6 cut(s) 124, 254, 290, 313, 368, 492
CviQI GTAC 2 cut(s) 397, 458
DdeI CTNAG 3 cut(s) 102, 200, 501
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 378
FaiI YATR 6 cut(s) 132, 140, 173, 327, 439, 441
FaqI GGGAC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 239, 291, 360
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 239, 291, 360
GluI GCNGC 3 cut(s) 239, 291, 360
GsuI CTGGAG 4 cut(s) 62, 207, 288, 474
HaeIII GGCC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 449
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 4 cut(s) 201, 220, 337, 378
Hpy188III TCNNGA 3 cut(s) 305, 431, 453
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 471
HpyCH4IV ACGT 2 cut(s) 371, 423
HpyCH4V TGCA 3 cut(s) 38, 317, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 443
HpyF3I CTNAG 3 cut(s) 102, 200, 501
HpySE526I ACGT 2 cut(s) 371, 423
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 250, 277, 346
MaeII ACGT 2 cut(s) 371, 423
MaeIII GTNAC 2 cut(s) 203, 344
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 53, 130, 391
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 494
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 4 cut(s) 156, 159, 301, 312
Mox20I TGGCCA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 365, 443
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 27, 312
NmuCI GTSAC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 3 cut(s) 240, 292, 361
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 27, 312
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 398, 459
RsaNI GTAC 2 cut(s) 397, 458
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 3 cut(s) 239, 291, 360
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 494
SetI ASST 8 cut(s) 103, 148, 168, 256, 292, 374, 426, 463
Sse9I AATT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 486
TaiI ACGT 2 cut(s) 374, 426
TasI AATT 1 cut(s) 176
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 238, 290, 359
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.