Prupe.6G351800_v2.0.a1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000145
Physical Location & Seq
Reverse (-)
29976409 .. 29981222
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G351800.4

Sequence Viewer

Length: 576 bp
ATGACAAACAAGGTCAACATGGAGGAGATAATCGCCTACAACATGAAGGCCAAGTCTTACTGCCCATATGATTTGAGCGTTCTCCGTATGCCCATTAATATATGCACGGAAGAACAAAGCTTTCTTACCTATGAGTCTTGGCGTTGTTTTTTCACAGCAAAAGATTTGCAAGAAGCTTGGCCAGTGCTAAAATCTGCTTTAAAAGAGTATGGCATTTCATGTGCATTGGATTTGGATCACTGCAGCAGCTGGAGGCTTCGAAAGTTTAAGTGCCCAAACCTCTTGTGCCATATCTTGGAGCATTCTTGCACATTTGTTTTCAAGGCAGTAAAAGTACTGAATGGAATGCCATGCTACCTCGTCTACACTGGGATAAGTATGTTTTCAGGAAAAAAACTGCTCATGAGTCTCCCGGTACAGGAACTTGAAAAACTGACATGCTGTAACATTTATCTTTGCCCAGAGGTTGCCGTTGTGGAAGACTGCATTGTTCATAACATGCCTCCGGCACCTCGTGTAAGGAGGCTTGCAAATTACATTCAAGCGATTAAAGGTGTTGAGGCGTTGAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.95

Weight (kDa)

8.38

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 1 cut(s) 363
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 2 cut(s) 336, 417
AfiI CCNNNNNNNGG 2 cut(s) 295, 418
AgsI TTSAA 3 cut(s) 322, 428, 542
AluBI AGCT 3 cut(s) 120, 176, 249
AluI AGCT 3 cut(s) 120, 176, 249
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 2 cut(s) 48, 179
ApeKI GCWGC 2 cut(s) 243, 246
AseI ATTAAT 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 508
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 255, 258
BceAI ACGGC 1 cut(s) 455
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 2 cut(s) 244, 247
BlsI GCNGC 2 cut(s) 245, 248
BmcAI AGTACT 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 418
Bse1I ACTGG 2 cut(s) 182, 373
Bse8I GATNNNNATC 1 cut(s) 234
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 295, 418
BseNI ACTGG 2 cut(s) 182, 373
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 2 cut(s) 255, 258
BshFI GGCC 2 cut(s) 50, 181
BshNI GGYRCC 1 cut(s) 508
BsiSI CCGG 2 cut(s) 413, 506
BslI CCNNNNNNNGG 2 cut(s) 295, 418
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 2 cut(s) 301, 351
BsnI GGCC 2 cut(s) 50, 181
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 235
BspANI GGCC 2 cut(s) 50, 181
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 245
BspPI GGATC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 508
BsrI ACTGG 2 cut(s) 182, 373
BssMI GATC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 528
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 1 cut(s) 235
BstNSI RCATGY 2 cut(s) 441, 502
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 255, 258
BstV2I GAAGAC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 50, 181
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 3 cut(s) 189, 238, 366
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 402
Csp6I GTAC 2 cut(s) 335, 416
CviAII CATG 7 cut(s) 19, 43, 219, 351, 403, 438, 499
CviJI RGCY 7 cut(s) 50, 120, 176, 181, 249, 256, 526
CviKI_1 RGCY 7 cut(s) 50, 120, 176, 181, 249, 256, 526
CviQI GTAC 2 cut(s) 335, 416
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraI TTTAAA 1 cut(s) 201
DraIII CACNNNGTG 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 179
FaeI CATG 7 cut(s) 22, 46, 222, 354, 406, 441, 502
FatI CATG 7 cut(s) 18, 42, 218, 350, 402, 437, 498
FauNDI CATATG 1 cut(s) 67
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 244, 247
Fsp4HI GCNGC 2 cut(s) 244, 247
GluI GCNGC 2 cut(s) 244, 247
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 2 cut(s) 50, 181
HapII CCGG 2 cut(s) 413, 506
Hin1II CATG 7 cut(s) 22, 46, 222, 354, 406, 441, 502
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 118, 174
HinfI GANTC 2 cut(s) 134, 406
HpaII CCGG 2 cut(s) 413, 506
Hpy166II GTNNAC 2 cut(s) 16, 364
Hpy188III TCNNGA 2 cut(s) 387, 403
Hpy8I GTNNAC 2 cut(s) 16, 364
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 7 cut(s) 105, 169, 224, 243, 309, 486, 530
Hsp92II CATG 7 cut(s) 22, 46, 222, 354, 406, 441, 502
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 8 cut(s) 195, 235, 354, 372, 404, 426, 474, 519
Lsp1109I GCAGC 2 cut(s) 255, 258
MaeIII GTNAC 1 cut(s) 443
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 122, 491
MhlI GDGCHC 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 1 cut(s) 532
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 2 cut(s) 143, 415
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 4 cut(s) 96, 200, 267, 549
Msp20I TGGCCA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 413, 506
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 2 cut(s) 301, 351
NciI CCSGG 1 cut(s) 413
NdeI CATATG 1 cut(s) 67
NdeII GATC 1 cut(s) 235
NlaIII CATG 7 cut(s) 22, 46, 222, 354, 406, 441, 502
NlaIV GGNNCC 1 cut(s) 510
NspI RCATGY 2 cut(s) 441, 502
NspV TTCGAA 1 cut(s) 259
PagI TCATGA 1 cut(s) 402
PctI GAATGC 2 cut(s) 301, 351
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 2 cut(s) 245, 248
PleI GAGTC 2 cut(s) 142, 414
PpsI GAGTC 2 cut(s) 142, 414
PshBI ATTAAT 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 510
PstI CTGCAG 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 2 cut(s) 336, 417
RsaNI GTAC 2 cut(s) 335, 416
SaqAI TTAA 4 cut(s) 96, 200, 267, 549
SatI GCNGC 2 cut(s) 244, 247
Sau3AI GATC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 336
SchI GAGTC 2 cut(s) 143, 415
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 259
Sse9I AATT 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 411
TaqI TCGA 1 cut(s) 259
TasI AATT 1 cut(s) 532
TatI WGTACW 1 cut(s) 334
Tru1I TTAA 4 cut(s) 96, 200, 267, 549
Tru9I TTAA 4 cut(s) 96, 200, 267, 549
TscAI CASTG 3 cut(s) 189, 245, 373
TseI GCWGC 2 cut(s) 243, 246
TspDTI ATGAA 3 cut(s) 59, 207, 482
TspGWI ACGGA 2 cut(s) 74, 122
TspRI CASTG 3 cut(s) 189, 245, 373
Van91I CCANNNNNTGG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 96
XceI RCATGY 2 cut(s) 441, 502
XmiI GTMKAC 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.