Rroxscaffold_1G00062640

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000145
Physical Location & Seq
Forward (+)
84704862 .. 84708241
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062640.1

Sequence Viewer

Length: 684 bp
ATGCCGTTGGAGGAGGATCCACACGACGACGCTATGGAAATCGAGGAGTCTGACATTCCGAAGCTACAGACTGACTTTGAACTCGTCTCTTACACTCTCTTCTACGATGAATTTCTAGACACAGATTTGCTGCAAAGAACATGGCCTATTGTGGAATCTGCCTTAGAAGAGTATGGCCTTTCGTGCACTCTGGATCTGGTGAAGGGTTATATGAGAGTGTCCACAACCAAAATGGCTTCAGATCCAGATTTTATATTCACAGCTATTGATATTCTTGAACTTTTGTCAAGAAGTGTTCCGGCAGATTGGGCAATAAAGATTCTTGATTGCAGTTGCCAACATGACATCATTAAAATTGGGAATCAAGAAGATGGTCTTTGCAGGATATTTGGGATCAATAAGGAGCAATTTCTTGCACGGAGAGCACTTCTCATGGGCGGTGTCATGAAGGGACTTGTTGCCGTGACGGTTTGTGGTATTTTTCTCAAGGGAAACACTATTGCTGTCCTGGGTTCACTTCATGGATTAAAGATGGTAAGGAGGATTGTGGAAGACTGTATAGCTTATGATGTGCCTCCTGCACCCCGTGTCCAGAGGATGAAAAAGAAGAGCCAAGCAAAGAAGGATAGGAGGATCAAAAGGACGAGTGAAGTGACGATGAATCTCCAAGCTTTGCGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.69

Weight (kDa)

5.35

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 31 - 109 2.4e-14 Krr1 KH1 domain
KH_KRR1_2nd PF21800 115 - 203 7.1e-13 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 438
AclWI GGATC 6 cut(s) 11, 24, 201, 236, 401, 641
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 587
AgsI TTSAA 2 cut(s) 80, 278
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 4 cut(s) 64, 263, 563, 671
AluI AGCT 4 cut(s) 64, 263, 563, 671
Alw21I GWGCWC 2 cut(s) 188, 427
Alw26I GTCTC 1 cut(s) 91
Alw44I GTGCAC 1 cut(s) 184
AlwI GGATC 6 cut(s) 11, 24, 201, 236, 401, 641
AoxI GGCC 2 cut(s) 143, 175
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 188
BamHI GGATCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 2 cut(s) 188, 427
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 365, 526
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpuEI CTTGAG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 26, 59
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 2 cut(s) 145, 177
BsiHKAI GWGCWC 2 cut(s) 188, 427
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 465
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 145, 177
Bsp1286I GDGCHC 2 cut(s) 188, 427
Bsp143I GATC 5 cut(s) 16, 193, 241, 393, 633
BspACI CCGC 1 cut(s) 438
BspANI GGCC 2 cut(s) 145, 177
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 6 cut(s) 11, 24, 201, 236, 401, 641
BspQI GCTCTTC 1 cut(s) 602
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 5 cut(s) 16, 193, 241, 393, 633
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 469, 557
Bst6I CTCTTC 3 cut(s) 104, 162, 602
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 603
BstKTI GATC 5 cut(s) 19, 196, 244, 396, 636
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 5 cut(s) 16, 193, 241, 393, 633
BstMWI GCNNNNNNNGC 3 cut(s) 183, 308, 422
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 3 cut(s) 16, 193, 241
BstYI RGATCY 3 cut(s) 16, 193, 241
BsuRI GGCC 2 cut(s) 145, 177
BtsCI GGATG 1 cut(s) 603
CciI TCATGA 1 cut(s) 444
CseI GACGC 1 cut(s) 38
CviAII CATG 5 cut(s) 141, 341, 433, 445, 521
CviJI RGCY 8 cut(s) 64, 145, 177, 236, 263, 563, 612, 671
CviKI_1 RGCY 8 cut(s) 64, 145, 177, 236, 263, 563, 612, 671
DdeI CTNAG 1 cut(s) 163
DpnI GATC 5 cut(s) 18, 195, 243, 395, 635
DpnII GATC 5 cut(s) 16, 193, 241, 393, 633
DraIII CACNNNGTG 1 cut(s) 587
Eam1104I CTCTTC 3 cut(s) 104, 162, 602
EarI CTCTTC 3 cut(s) 104, 162, 602
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 144, 344, 436, 448, 524
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 1 cut(s) 465
FatI CATG 5 cut(s) 140, 340, 432, 444, 520
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 610
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 2 cut(s) 145, 177
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 38
Hin1II CATG 5 cut(s) 144, 344, 436, 448, 524
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 5 cut(s) 47, 155, 319, 361, 661
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 3 cut(s) 186, 222, 515
Hpy188I TCNGA 3 cut(s) 52, 60, 241
Hpy188III TCNNGA 9 cut(s) 116, 191, 245, 275, 288, 323, 365, 445, 592
Hpy8I GTNNAC 3 cut(s) 186, 222, 515
Hpy99I CGWCG 2 cut(s) 29, 32
HpyAV CCTTC 3 cut(s) 196, 442, 616
HpyCH4III ACNGT 2 cut(s) 469, 557
HpyCH4V TGCA 6 cut(s) 133, 186, 330, 381, 416, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 308, 422
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 5 cut(s) 144, 344, 436, 448, 524
Kzo9I GATC 5 cut(s) 16, 193, 241, 393, 633
LguI GCTCTTC 1 cut(s) 602
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 9 cut(s) 176, 182, 258, 312, 367, 494, 521, 591, 605
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 463, 652
MalI GATC 5 cut(s) 18, 195, 243, 395, 635
MboI GATC 5 cut(s) 16, 193, 241, 393, 633
MboII GAAGA 5 cut(s) 91, 179, 380, 563, 619
MflI RGATCY 3 cut(s) 16, 193, 241
MhlI GDGCHC 2 cut(s) 188, 427
MluCI AATT 3 cut(s) 110, 354, 407
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 7 cut(s) 4, 7, 37, 534, 585, 588, 624
MseI TTAA 2 cut(s) 351, 527
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 183, 308, 422
NdeII GATC 5 cut(s) 16, 193, 241, 393, 633
NlaIII CATG 5 cut(s) 144, 344, 436, 448, 524
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 463, 652
PagI TCATGA 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 602
PfeI GAWTC 4 cut(s) 155, 319, 361, 661
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 3 cut(s) 16, 193, 241
SapI GCTCTTC 1 cut(s) 602
SaqAI TTAA 2 cut(s) 351, 527
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 5 cut(s) 16, 193, 241, 393, 633
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 188, 427
SetI ASST 4 cut(s) 66, 265, 565, 673
SfcI CTRYAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 3 cut(s) 110, 354, 407
SsiI CCGC 1 cut(s) 438
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 469, 557
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 110, 354, 407
TfiI GAWTC 4 cut(s) 155, 319, 361, 661
Tru1I TTAA 2 cut(s) 351, 527
Tru9I TTAA 2 cut(s) 351, 527
TseFI GTSAC 2 cut(s) 463, 652
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 2 cut(s) 463, 652
TspDTI ATGAA 5 cut(s) 123, 461, 509, 614, 674
TspGWI ACGGA 1 cut(s) 433
VneI GTGCAC 1 cut(s) 184
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.