Rh7BG118900

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000145
Physical Location & Seq
Forward (+)
8853167 .. 8853602
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG118900.1

Sequence Viewer

Length: 231 bp
ATGTTCTGTGCAGCAAAACTGGTGCAAGAAGCTTGGCCGATGGTGGAATCTTCCTTAGAAAAGTATTGCATTTCGTGCACACTTGATCAGGCTGAGCGTTCCATTACATTCTCAACCAGCTCAAGGACTAGGGGTCCAGATATTGTTAACAAGGCTAGGGATCTTCTTGAGCTTTTAACATTGACTGCGGTTCCATCATGCCAGATCCCGTGTCAGTTCCTAGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

5.18

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 7 - 60 1.6e-10 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 168, 199
AcoI YGGCCR 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 123
AhdI GACNNNNNGTC 1 cut(s) 132
AluBI AGCT 4 cut(s) 32, 120, 172, 224
AluI AGCT 4 cut(s) 32, 120, 172, 224
Alw21I GWGCWC 1 cut(s) 80
Alw44I GTGCAC 1 cut(s) 76
AlwI GGATC 2 cut(s) 168, 199
AoxI GGCC 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 34, 202
BclI TGATCA 1 cut(s) 85
BfaI CTAG 3 cut(s) 129, 156, 221
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 134
BmeRI GACNNNNNGTC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 135, 192
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 106, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 85, 160, 204
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 135, 192
BspPI GGATC 2 cut(s) 168, 199
BsrI ACTGG 1 cut(s) 24
BssMI GATC 3 cut(s) 85, 160, 204
BstAPI GCANNNNNTGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 55, 93
BstKTI GATC 3 cut(s) 88, 163, 207
BstMBI GATC 3 cut(s) 85, 160, 204
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 160, 204
BstYI RGATCY 2 cut(s) 160, 204
BsuRI GGCC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 1 cut(s) 198
CviJI RGCY 7 cut(s) 32, 37, 92, 120, 155, 172, 224
CviKI_1 RGCY 7 cut(s) 32, 37, 92, 120, 155, 172, 224
DdeI CTNAG 2 cut(s) 55, 93
DpnI GATC 3 cut(s) 87, 162, 206
DpnII GATC 3 cut(s) 85, 160, 204
DriI GACNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 134
FaeI CATG 1 cut(s) 201
FaiI YATR 1 cut(s) 199
FatI CATG 1 cut(s) 197
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 3 cut(s) 129, 156, 221
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 1 cut(s) 201
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 1 cut(s) 47
HpaI GTTAAC 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 78, 148
Hpy188III TCNNGA 2 cut(s) 137, 167
Hpy8I GTNNAC 2 cut(s) 78, 148
HpyCH4V TGCA 4 cut(s) 11, 25, 69, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 2 cut(s) 55, 93
Hsp92II CATG 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 85, 160, 204
LpnPI CCDG 5 cut(s) 5, 74, 130, 150, 215
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 3 cut(s) 129, 156, 221
MalI GATC 3 cut(s) 87, 162, 206
MboI GATC 3 cut(s) 85, 160, 204
MboII GAAGA 2 cut(s) 42, 155
MflI RGATCY 2 cut(s) 160, 204
MhlI GDGCHC 1 cut(s) 80
MseI TTAA 2 cut(s) 147, 176
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 3 cut(s) 85, 160, 204
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 135, 192
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 135, 192
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 160, 204
SaqAI TTAA 2 cut(s) 147, 176
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 85, 160, 204
Sau96I GGNCC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 80
SetI ASST 4 cut(s) 34, 122, 174, 226
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 121, 167
SmoI CTYRAG 2 cut(s) 121, 167
SsiI CCGC 1 cut(s) 188
SspMI CTAG 3 cut(s) 129, 156, 221
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 147, 176
Tru9I TTAA 2 cut(s) 147, 176
TseI GCWGC 1 cut(s) 11
VneI GTGCAC 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 134
XspI CTAG 3 cut(s) 129, 156, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.