Rh7BG110700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000145
Physical Location & Seq
Reverse (-)
8337534 .. 8348647
11114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG110700.1

Sequence Viewer

Length: 1920 bp
ATGACGAACAGGAAAAGGCTCAGAACCTCTAGAAGAACCGCCACCGCCGCTGCACAATCGGATTTCTTCGACGACTTGCCTGACGATCTCGTCGTCTTCATCCTCTGCAAGCTCAGCTCCTCCGCTTCCTCTCCCTCCGATCTCATCAACGTCCTCATCACATGCAAGAGATTGAACCGGTTCGGGCTTCACTCTCTGGTACTATCGAAAGCCGGTCCAGGAGCTTTTGCTATCAAGGCCAAGAGCTGGTCCGACTCGGCTCACCGGTTTCTCAAGCTCTGCGTTAGCGCCGGTAACATCGAAGCTTGCTACACTCTCGGAATGATCCGATTTTATTGCTTACAAAACCGAGGCAGTGGCGCTTCGCTAATGGCCAAGGCCGCCATGCGGTGCCACACGCGTGCGCTCTACTCCCTCGCCGTGATTCAGTTCAACGGCAGCGGCGGTTCCAAGAAAGAGAAGGACCTACGCGCCGGCGTGGCTCTCTGCGCACGCGCCGCCGGGCTCGGCCACATCGACGCGCTCCGCGAGCTTGGGCATTGCCTCCAGGACGGTTACGGTGTCCGCCAGAACGTCTCGGAGGGACGACGCCTCATAGTCCAGGCCAACGCGCAGGAGCTCGCGACGGTTATAACCTCCGCCACGTGGCGGTCCCACCAGTACCAGCACTTCTACGCGTGCCTGACGGGGTTGGTTAGTTGCCCGCTGCTGAGCGACTTCGGGTGCAACGTTCCCGGGCCGGAGGTCCACCCGGCGAACCGGTTCATGAAGGAGTGGTTCGGGTCGGGTCGGTGGTTGGAGGGCGTTGGGCTGAGGATGTGCTCGCACGTGGGGTGCGGGAGGCCCGAGACGAGGCCGCACGAGTTTCGGAGGTGCTCGGTCTGTGGTACGGTCAATTACTGCTCGCGTGGGTGTCAAGCGCTGGATTGGAAGCTGAGGCACAAGGTTCAGTGTAAGCCGATCGATCGGTGGCTAGGGGTTGAAGGCGGTGGCGGTGGTGATGGAGTTGAAGGCGGAGAGGTCGCTCCTTGCTTTCCTCTGACTTCCCTTCCGGTGTTCTGCGGCGCCTCCGATCAGGACCTCTGGTTGTTCGATGAGCCGAGTCGGAGCAGTGCGAGGTTGAATTACTACGACGCCGCTCAGGCCAATAGGATTGCTGATCTGCTTCGTGCTACTGACGTCTCTTGCTTATGGACCCTTCTACGAACGAACGAGACCACTTTCTCTGCCTCCTTCCATGAGAAATACGAAAACAAGTTGCAGGACATATGGCCGGTGGTCGAATCGTCTTTAGAGGACTATGGCATTGCATGCGCTTTGAATCTGGCCGAGCGTTCTTTGACAATCTCAACAACCAGAAGGACTAAGGGCCGAAATTATTTTATCAAGGCTAGGCGACTCGTTGAACTTTTGGCAGCAACTCATGTTCCACCACATATGGCAATAGAAACACTAAACGGCGATCGGAGACATATCCTCATCAAGATTGGGAATCAAGAAGGTGGACTTTGCTCAAAATTTGGGATAAAAAAGGAGAAATTTATCAAACAATGGGAATGTCTTGCCTGCTCCCTAGAGGGGTACACAAATGCACTTGCAGCACTGACGCGTTGCAAGCTTTTTCTTAATGAAAACAATCTTGCTGCAGTGGGTCCAGCGCCATCATTCTTGACGGTCAGGAAGGTTGTCATTGACTGCATTGTTAATGACATGAATCCAGAAACTTGTATGAGGGAGTTGACAACAGAATCCTTACAGATGCGTGCAAAGAAATATGGGGCGATTGAACTTCAACAACCAAATGTCGATGACATTGGAATGGAGAAGTGTGGCCCTTTTTTGGATTTATATGGCATGCTTGAAGTAACCTCTTATTCTTCATGCGTCGTAATAGGCCGAGTTACCTTATTTACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1 zf-MYND

Protein Analysis

639

Amino Acids

70.54

Weight (kDa)

8.81

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_27 PF23310 83 - 156 8.7e-13 Plant tetratrico peptide repeats
zf-MYND PF01753 279 - 318 1.3e-07 MYND finger
KH_KRR1_1st PF17903 408 - 473 3.1e-08 Krr1 KH1 domain
KH_KRR1_2nd PF21800 510 - 580 9.3e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AasI GACNNNNNNGTC 1 cut(s) 89
AatII GACGTC 1 cut(s) 1182
Acc16I TGCGCA 1 cut(s) 490
AccB1I GGYRCC 2 cut(s) 390, 1064
AccB7I CCANNNNNTGG 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 1139
AclI AACGTT 1 cut(s) 729
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 4 cut(s) 372, 508, 1271, 1326
AcsI RAATTY 2 cut(s) 1517, 1538
AcvI CACGTG 2 cut(s) 645, 829
AcyI GRCGYC 4 cut(s) 589, 1065, 1134, 1179
AfaI GTAC 4 cut(s) 201, 662, 889, 1583
AfeI AGCGCT 1 cut(s) 921
AfiI CCNNNNNNNGG 7 cut(s) 246, 387, 645, 648, 852, 1578, 1840
AflIII ACRYGT 3 cut(s) 398, 675, 1607
AgeI ACCGGT 3 cut(s) 177, 264, 759
AjnI CCWGG 3 cut(s) 217, 546, 600
AleI CACNNNNGTG 1 cut(s) 399
Alw21I GWGCWC 3 cut(s) 621, 824, 878
Alw26I GTCTC 5 cut(s) 580, 842, 1186, 1208, 1462
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 2 cut(s) 734, 845
Aor51HI AGCGCT 1 cut(s) 921
ApeKI GCWGC 6 cut(s) 50, 438, 706, 1415, 1598, 1643
ApoI RAATTY 2 cut(s) 1517, 1538
AsiGI ACCGGT 3 cut(s) 177, 264, 759
Asp700I GAANNNNTTC 2 cut(s) 179, 761
AsuC2I CCSGG 4 cut(s) 502, 735, 736, 752
AsuHPI GGTGA 2 cut(s) 254, 1010
AvaI CYCGRG 2 cut(s) 734, 845
AvaII GGWCC 8 cut(s) 215, 249, 463, 651, 745, 1078, 1194, 1652
BalI TGGCCA 1 cut(s) 374
BanI GGYRCC 2 cut(s) 390, 1064
BanII GRGCYC 2 cut(s) 507, 621
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BauI CACGAG 1 cut(s) 860
BbrPI CACGTG 2 cut(s) 645, 829
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 3 cut(s) 621, 824, 878
BbvCI CCTCAGC 2 cut(s) 812, 935
BbvI GCAGC 6 cut(s) 37, 450, 693, 1427, 1610, 1630
BccI CCATC 2 cut(s) 995, 1669
BceAI ACGGC 3 cut(s) 404, 451, 1474
BcgI CGANNNNNNTGC 4 cut(s) 318, 352, 848, 882
BciT130I CCWGG 3 cut(s) 219, 548, 602
BcnI CCSGG 4 cut(s) 502, 735, 736, 752
BcoDI GTCTC 5 cut(s) 580, 842, 1186, 1208, 1462
BfaI CTAG 4 cut(s) 30, 974, 1392, 1574
BfmI CTRYAG 1 cut(s) 1644
BfoI RGCGCY 5 cut(s) 291, 363, 923, 1068, 1661
BglI GCCNNNNNGGC 2 cut(s) 479, 1142
BlpI GCTNAGC 2 cut(s) 113, 710
Bme1390I CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
Bme18I GGWCC 8 cut(s) 215, 249, 463, 651, 745, 1078, 1194, 1652
BmeT110I CYCGRG 2 cut(s) 734, 845
BmiI GGNNCC 6 cut(s) 392, 448, 653, 1066, 1196, 1653
BmrFI CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
BmsI GCATC 1 cut(s) 1749
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 3 cut(s) 812, 935, 1140
Bpu1102I GCTNAGC 2 cut(s) 113, 710
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 4 cut(s) 502, 735, 736, 752
Bsa29I ATCGAT 1 cut(s) 963
BsaAI YACGTR 2 cut(s) 645, 829
BsaHI GRCGYC 4 cut(s) 589, 1065, 1134, 1179
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 3 cut(s) 349, 375, 734
BsaWI WCCGGW 4 cut(s) 177, 264, 759, 1051
Bsc4I CCNNNNNNNGG 7 cut(s) 246, 387, 645, 648, 852, 1578, 1840
Bse118I RCCGGY 7 cut(s) 177, 212, 264, 290, 473, 759, 1273
Bse1I ACTGG 1 cut(s) 658
Bse3DI GCAATG 2 cut(s) 538, 1305
BseBI CCWGG 3 cut(s) 219, 548, 602
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 3 cut(s) 349, 375, 734
BseGI GGATG 2 cut(s) 99, 822
BseLI CCNNNNNNNGG 7 cut(s) 246, 387, 645, 648, 852, 1578, 1840
BseMI GCAATG 2 cut(s) 538, 1305
BseMII CTCAG 6 cut(s) 34, 127, 701, 803, 926, 1154
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 6 cut(s) 37, 450, 693, 1427, 1610, 1630
BsgI GTGCAG 1 cut(s) 36
Bsh1285I CGRYCG 3 cut(s) 963, 967, 1465
BshNI GGYRCC 2 cut(s) 390, 1064
BshTI ACCGGT 3 cut(s) 177, 264, 759
BshVI ATCGAT 1 cut(s) 963
BsiEI CGRYCG 3 cut(s) 963, 967, 1465
BsiHKAI GWGCWC 3 cut(s) 621, 824, 878
BsiHKCI CYCGRG 2 cut(s) 734, 845
BslFI GGGAC 2 cut(s) 597, 637
BslI CCNNNNNNNGG 7 cut(s) 246, 387, 645, 648, 852, 1578, 1840
BsmAI GTCTC 5 cut(s) 580, 842, 1186, 1208, 1462
BsmBI CGTCTC 3 cut(s) 580, 842, 1186
BsmFI GGGAC 2 cut(s) 597, 637
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 2 cut(s) 734, 845
Bsp1286I GDGCHC 4 cut(s) 507, 621, 824, 878
Bsp143I GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
Bsp1720I GCTNAGC 2 cut(s) 113, 710
Bsp68I TCGCGA 1 cut(s) 623
BspCNI CTCAG 6 cut(s) 33, 126, 702, 804, 927, 1153
BspDI ATCGAT 1 cut(s) 963
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 6 cut(s) 392, 448, 653, 1066, 1196, 1653
BspMAI CTGCAG 1 cut(s) 1648
BspPI GGATC 1 cut(s) 319
BspT107I GGYRCC 2 cut(s) 390, 1064
BspTNI GGTCTC 1 cut(s) 1208
BsrBI CCGCTC 1 cut(s) 1139
BsrDI GCAATG 2 cut(s) 538, 1305
BsrFI RCCGGY 7 cut(s) 177, 212, 264, 290, 473, 759, 1273
BsrI ACTGG 1 cut(s) 658
BssAI RCCGGY 7 cut(s) 177, 212, 264, 290, 473, 759, 1273
BssECI CCNNGG 3 cut(s) 349, 375, 734
BssMI GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
BssNI GRCGYC 4 cut(s) 589, 1065, 1134, 1179
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 3 cut(s) 219, 548, 602
Bst4CI ACNGT 5 cut(s) 554, 560, 628, 892, 1675
BstACI GRCGYC 4 cut(s) 589, 1065, 1134, 1179
BstAPI GCANNNNNTGC 1 cut(s) 1311
BstBAI YACGTR 2 cut(s) 645, 829
BstDEI CTNAG 7 cut(s) 20, 113, 710, 812, 935, 1140, 1365
BstF5I GGATG 2 cut(s) 99, 822
BstH2I RGCGCY 5 cut(s) 291, 363, 923, 1068, 1661
BstKTI GATC 8 cut(s) 88, 142, 327, 963, 967, 1075, 1162, 1465
BstMAI GTCTC 5 cut(s) 580, 842, 1186, 1208, 1462
BstMBI GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
BstMCI CGRYCG 3 cut(s) 963, 967, 1465
BstNI CCWGG 3 cut(s) 219, 548, 602
BstNSI RCATGY 3 cut(s) 165, 1314, 1858
BstSCI CCNGG 7 cut(s) 217, 500, 546, 600, 733, 734, 750
BstSFI CTRYAG 1 cut(s) 1644
BstV1I GCAGC 6 cut(s) 37, 450, 693, 1427, 1610, 1630
BstV2I GAAGAC 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 963
BsuTUI ATCGAT 1 cut(s) 963
BtsCI GGATG 2 cut(s) 99, 822
BtsI GCAGTG 3 cut(s) 361, 1117, 1653
BtsIMutI CAGTG 5 cut(s) 361, 956, 1117, 1601, 1653
BtuMI TCGCGA 1 cut(s) 623
CciI TCATGA 1 cut(s) 765
Cfr10I RCCGGY 7 cut(s) 177, 212, 264, 290, 473, 759, 1273
Cfr9I CCCGGG 1 cut(s) 734
ClaI ATCGAT 1 cut(s) 963
CseI GACGC 5 cut(s) 527, 597, 1142, 1615, 1873
Csp6I GTAC 4 cut(s) 200, 661, 888, 1582
CspAI ACCGGT 3 cut(s) 177, 264, 759
CviAII CATG 9 cut(s) 162, 385, 766, 1238, 1311, 1424, 1711, 1855, 1881
CviQI GTAC 4 cut(s) 200, 661, 888, 1582
DdeI CTNAG 7 cut(s) 20, 113, 710, 812, 935, 1140, 1365
DinI GGCGCC 1 cut(s) 1066
DpnI GATC 8 cut(s) 87, 141, 326, 962, 966, 1074, 1161, 1464
DpnII GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 4 cut(s) 372, 508, 1271, 1326
EciI GGCGGA 3 cut(s) 554, 628, 1029
Ecl136II GAGCTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 2 cut(s) 507, 621
Eco31I GGTCTC 1 cut(s) 1208
Eco47I GGWCC 8 cut(s) 215, 249, 463, 651, 745, 1078, 1194, 1652
Eco47III AGCGCT 1 cut(s) 921
Eco53kI GAGCTC 1 cut(s) 619
Eco72I CACGTG 2 cut(s) 645, 829
Eco88I CYCGRG 2 cut(s) 734, 845
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 2 cut(s) 463, 1078
EcoRII CCWGG 3 cut(s) 217, 546, 600
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 507, 621
EgeI GGCGCC 1 cut(s) 1066
EheI GGCGCC 1 cut(s) 1066
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 3 cut(s) 580, 842, 1186
FaeI CATG 9 cut(s) 165, 388, 769, 1241, 1314, 1427, 1714, 1858, 1884
FalI AAGNNNNNCTT 2 cut(s) 1491, 1523
FaqI GGGAC 2 cut(s) 597, 637
FatI CATG 9 cut(s) 161, 384, 765, 1237, 1310, 1423, 1710, 1854, 1880
FauI CCCGC 2 cut(s) 711, 830
FauNDI CATATG 2 cut(s) 1268, 1437
FokI GGATG 2 cut(s) 86, 829
FriOI GRGCYC 2 cut(s) 507, 621
FspBI CTAG 4 cut(s) 30, 974, 1392, 1574
FspI TGCGCA 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 530
HaeII RGCGCY 5 cut(s) 291, 363, 923, 1068, 1661
HgaI GACGC 5 cut(s) 527, 597, 1142, 1615, 1873
Hin1I GRCGYC 4 cut(s) 589, 1065, 1134, 1179
Hin1II CATG 9 cut(s) 165, 388, 769, 1241, 1314, 1427, 1714, 1858, 1884
HincII GTYRAC 1 cut(s) 1740
HindII GTYRAC 1 cut(s) 1740
HindIII AAGCTT 2 cut(s) 303, 1616
HinfI GANTC 9 cut(s) 254, 424, 1102, 1283, 1321, 1398, 1492, 1714, 1748
HphI GGTGA 2 cut(s) 254, 1010
Hpy166II GTNNAC 4 cut(s) 748, 1505, 1584, 1740
Hpy188III TCNNGA 9 cut(s) 30, 622, 766, 1076, 1483, 1496, 1669, 1678, 1718
Hpy8I GTNNAC 4 cut(s) 748, 1505, 1584, 1740
Hpy99I CGWCG 7 cut(s) 74, 95, 521, 591, 628, 1136, 1889
HpyCH4III ACNGT 5 cut(s) 554, 560, 628, 892, 1675
HpyCH4IV ACGT 6 cut(s) 150, 573, 644, 729, 828, 1179
HpyF3I CTNAG 7 cut(s) 20, 113, 710, 812, 935, 1140, 1365
HpySE526I ACGT 6 cut(s) 150, 573, 644, 729, 828, 1179
Hsp92I GRCGYC 4 cut(s) 589, 1065, 1134, 1179
Hsp92II CATG 9 cut(s) 165, 388, 769, 1241, 1314, 1427, 1714, 1858, 1884
KasI GGCGCC 1 cut(s) 1064
KroI GCCGGC 1 cut(s) 473
KroNI GCCGGC 1 cut(s) 475
Kzo9I GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
LmnI GCTCC 7 cut(s) 122, 221, 528, 616, 1030, 1107, 1574
Lsp1109I GCAGC 6 cut(s) 37, 450, 693, 1427, 1610, 1630
LweI GCATC 1 cut(s) 1749
MaeI CTAG 4 cut(s) 30, 974, 1392, 1574
MaeII ACGT 6 cut(s) 150, 573, 644, 729, 828, 1179
MaeIII GTNAC 4 cut(s) 293, 554, 1864, 1900
MalI GATC 8 cut(s) 87, 141, 326, 962, 966, 1074, 1161, 1464
MbiI CCGCTC 1 cut(s) 1139
MboI GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
MboII GAAGA 4 cut(s) 45, 58, 88, 1869
MhlI GDGCHC 4 cut(s) 507, 621, 824, 878
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 5 cut(s) 895, 1123, 1375, 1517, 1538
MluI ACGCGT 3 cut(s) 398, 675, 1607
MluNI TGGCCA 1 cut(s) 374
Mly113I GGCGCC 1 cut(s) 1065
MlyI GAGTC 3 cut(s) 248, 1111, 1392
MmeI TCCRAC 3 cut(s) 276, 777, 1085
Mox20I TGGCCA 1 cut(s) 374
MreI CGCCGGCG 1 cut(s) 473
MroNI GCCGGC 1 cut(s) 473
MroXI GAANNNNTTC 2 cut(s) 179, 761
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 1626, 1704
MslI CAYNNNNRTG 2 cut(s) 399, 1817
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 3 cut(s) 50, 441, 706
MspR9I CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
MvaI CCWGG 3 cut(s) 219, 548, 602
NaeI GCCGGC 1 cut(s) 475
NarI GGCGCC 1 cut(s) 1065
NciI CCSGG 4 cut(s) 502, 735, 736, 752
NdeI CATATG 2 cut(s) 1268, 1437
NdeII GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
NgoMIV GCCGGC 1 cut(s) 473
NlaIII CATG 9 cut(s) 165, 388, 769, 1241, 1314, 1427, 1714, 1858, 1884
NlaIV GGNNCC 6 cut(s) 392, 448, 653, 1066, 1196, 1653
NmeAIII GCCGAG 4 cut(s) 236, 486, 1125, 1354
NruI TCGCGA 1 cut(s) 623
NsbI TGCGCA 1 cut(s) 490
NspI RCATGY 3 cut(s) 165, 1314, 1858
OliI CACNNNNGTG 1 cut(s) 399
PaeI GCATGC 2 cut(s) 1314, 1858
PagI TCATGA 1 cut(s) 765
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 513, 525, 726
PdiI GCCGGC 1 cut(s) 475
PdmI GAANNNNTTC 2 cut(s) 179, 761
PfeI GAWTC 6 cut(s) 424, 1283, 1321, 1492, 1714, 1748
PflMI CCANNNNNTGG 1 cut(s) 246
PfoI TCCNGGA 2 cut(s) 217, 546
PinAI ACCGGT 3 cut(s) 177, 264, 759
Ple19I CGATCG 3 cut(s) 963, 967, 1465
PleI GAGTC 3 cut(s) 248, 1110, 1392
PluTI GGCGCC 1 cut(s) 1068
PmaCI CACGTG 2 cut(s) 645, 829
PmlI CACGTG 2 cut(s) 645, 829
PpsI GAGTC 3 cut(s) 248, 1110, 1392
Ppu21I YACGTR 2 cut(s) 645, 829
PpuMI RGGWCCY 2 cut(s) 463, 1078
PsiI TTATAA 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 729
Psp5II RGGWCCY 2 cut(s) 463, 1078
Psp6I CCWGG 3 cut(s) 217, 546, 600
PspCI CACGTG 2 cut(s) 645, 829
PspGI CCWGG 3 cut(s) 217, 546, 600
PspN4I GGNNCC 6 cut(s) 392, 448, 653, 1066, 1196, 1653
PspPPI RGGWCCY 2 cut(s) 463, 1078
PstI CTGCAG 1 cut(s) 1648
PvuI CGATCG 3 cut(s) 963, 967, 1465
RruI TCGCGA 1 cut(s) 623
RsaI GTAC 4 cut(s) 201, 662, 889, 1583
RsaNI GTAC 4 cut(s) 200, 661, 888, 1582
RseI CAYNNNNRTG 2 cut(s) 399, 1817
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 1626, 1704
Sau3AI GATC 8 cut(s) 85, 139, 324, 960, 964, 1072, 1159, 1462
SchI GAGTC 3 cut(s) 248, 1111, 1392
ScrFI CCNGG 7 cut(s) 219, 502, 548, 602, 735, 736, 752
SduI GDGCHC 4 cut(s) 507, 621, 824, 878
SfaNI GCATC 1 cut(s) 1749
SfcI CTRYAG 1 cut(s) 1644
SfoI GGCGCC 1 cut(s) 1066
SgrAI CRCCGGYG 1 cut(s) 473
SinI GGWCC 8 cut(s) 215, 249, 463, 651, 745, 1078, 1194, 1652
SmaI CCCGGG 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 399, 1817
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SphI GCATGC 2 cut(s) 1314, 1858
Sse9I AATT 5 cut(s) 895, 1123, 1375, 1517, 1538
SspDI GGCGCC 1 cut(s) 1064
SspMI CTAG 4 cut(s) 30, 974, 1392, 1574
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 7 cut(s) 217, 500, 546, 600, 733, 734, 750
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 5 cut(s) 554, 560, 628, 892, 1675
TaiI ACGT 6 cut(s) 153, 576, 647, 732, 831, 1182
TaqI TCGA 8 cut(s) 69, 206, 300, 516, 963, 1092, 1281, 1806
TaqII GACCGA 1 cut(s) 868
TasI AATT 5 cut(s) 895, 1123, 1375, 1517, 1538
TauI GCSGC 7 cut(s) 50, 383, 444, 500, 859, 1065, 1139
TfiI GAWTC 6 cut(s) 424, 1283, 1321, 1492, 1714, 1748
Tru1I TTAA 2 cut(s) 1626, 1704
Tru9I TTAA 2 cut(s) 1626, 1704
TscAI CASTG 5 cut(s) 361, 956, 1117, 1608, 1653
TseI GCWGC 6 cut(s) 50, 438, 706, 1415, 1598, 1643
TspDTI ATGAA 6 cut(s) 88, 754, 782, 1644, 1727, 1869
TspMI CCCGGG 1 cut(s) 734
TspRI CASTG 5 cut(s) 361, 956, 1117, 1608, 1653
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 8 cut(s) 215, 249, 463, 651, 745, 1078, 1194, 1652
XapI RAATTY 2 cut(s) 1517, 1538
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 3 cut(s) 165, 1314, 1858
XmaI CCCGGG 1 cut(s) 734
XmnI GAANNNNTTC 2 cut(s) 179, 761
XspI CTAG 4 cut(s) 30, 974, 1392, 1574
ZraI GACGTC 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.