MD02G1058900.v1.1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000145
Physical Location & Seq
Reverse (-)
4726052 .. 4726942
891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1058900.v1.1.491

Sequence Viewer

Length: 249 bp
ATGAGGGAATGTGATGAACGGAAGGAACTTCTCCTTGGCCCAGATGATATCTACATAAAGCCACTTGAAGAACTAACAGGATGTTTTGTCATCGTTAACTGGAACACCGATACTGTTATAGCTACGGGCTTGTTTGAAGGACTAAAGCTAGTCAGGATGATTGTGGAAGAGTGCATCGTTTGTAAAATTCCTGCTGTCGACATTATCAATAAGATTAGAACTCGGGGCGCTGGGGCTTTATTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.28

Weight (kDa)

4.85

Isoelectric Point (pI)

17.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 6 - 68 9.4e-10 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 186
AgsI TTSAA 2 cut(s) 68, 137
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 2 cut(s) 122, 148
AluI AGCT 2 cut(s) 122, 148
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 222
BfaI CTAG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 38
BmsI GCATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 86, 162
BseNI ACTGG 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 222
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 222
BspANI GGCC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 86, 162
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 86, 162
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 38
CviJI RGCY 6 cut(s) 39, 61, 122, 129, 148, 236
CviKI_1 RGCY 6 cut(s) 39, 61, 122, 129, 148, 236
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 34
Eco32I GATATC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaiI YATR 3 cut(s) 56, 119, 244
FblI GTMKAC 1 cut(s) 198
FokI GGATG 2 cut(s) 93, 169
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 229
GsaI CCCAGC 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 1 cut(s) 230
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 2 cut(s) 97, 199
HindII GTYRAC 2 cut(s) 97, 199
HpaI GTTAAC 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 97, 199
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 97, 199
HpyAV CCTTC 2 cut(s) 16, 131
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 174
HspAI GCGC 1 cut(s) 228
KspAI GTTAAC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 54, 63, 85, 139, 204, 216
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 149
MboII GAAGA 2 cut(s) 80, 179
MluCI AATT 1 cut(s) 186
MseI TTAA 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 38
SetI ASST 2 cut(s) 124, 150
SfaNI GCATC 1 cut(s) 183
Sse9I AATT 1 cut(s) 186
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 186
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 34
XapI RAATTY 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.