Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| KH_KRR1_1st | PF17903 | 28 - 103 | 2e-12 | Krr1 KH1 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 23 |
| AclWI | GGATC | 2 cut(s) | 231, 461 |
| AcoI | YGGCCR | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 98 |
| AdeI | CACNNNGTG | 1 cut(s) | 407 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 22, 34, 109, 184 |
| AgsI | TTSAA | 1 cut(s) | 488 |
| AjnI | CCWGG | 1 cut(s) | 177 |
| AluBI | AGCT | 4 cut(s) | 268, 331, 383, 491 |
| AluI | AGCT | 4 cut(s) | 268, 331, 383, 491 |
| Alw26I | GTCTC | 1 cut(s) | 79 |
| AlwI | GGATC | 2 cut(s) | 231, 461 |
| AoxI | GGCC | 1 cut(s) | 131 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| ApoI | RAATTY | 1 cut(s) | 98 |
| AspLEI | GCGC | 1 cut(s) | 167 |
| AspS9I | GGNCC | 2 cut(s) | 25, 462 |
| AvaII | GGWCC | 2 cut(s) | 25, 462 |
| BalI | TGGCCA | 1 cut(s) | 133 |
| BbsI | GAAGAC | 1 cut(s) | 378 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 1 cut(s) | 179 |
| BcoDI | GTCTC | 1 cut(s) | 79 |
| BfaI | CTAG | 1 cut(s) | 332 |
| BfoI | RGCGCY | 1 cut(s) | 168 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 1 cut(s) | 179 |
| Bme18I | GGWCC | 2 cut(s) | 25, 462 |
| BmgT120I | GGNCC | 2 cut(s) | 25, 462 |
| BmrFI | CCNGG | 1 cut(s) | 179 |
| BpiI | GAAGAC | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 257, 287 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 22, 34, 109, 184 |
| Bse1I | ACTGG | 1 cut(s) | 465 |
| BseBI | CCWGG | 1 cut(s) | 179 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseGI | GGATG | 3 cut(s) | 187, 262, 423 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 22, 34, 109, 184 |
| BseMII | CTCAG | 2 cut(s) | 39, 259 |
| BseNI | ACTGG | 1 cut(s) | 465 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 384 |
| BshFI | GGCC | 1 cut(s) | 133 |
| BsiSI | CCGG | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 22, 34, 109, 184 |
| BsmAI | GTCTC | 1 cut(s) | 79 |
| BsmBI | CGTCTC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 133 |
| Bsp143I | GATC | 4 cut(s) | 30, 223, 317, 453 |
| BspACI | CCGC | 1 cut(s) | 23 |
| BspANI | GGCC | 1 cut(s) | 133 |
| BspCNI | CTCAG | 2 cut(s) | 40, 258 |
| BspHI | TCATGA | 2 cut(s) | 340, 385 |
| BspPI | GGATC | 2 cut(s) | 231, 461 |
| BspQI | GCTCTTC | 1 cut(s) | 422 |
| BsrI | ACTGG | 1 cut(s) | 465 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssMI | GATC | 4 cut(s) | 30, 223, 317, 453 |
| Bst2UI | CCWGG | 1 cut(s) | 179 |
| Bst4CI | ACNGT | 1 cut(s) | 377 |
| Bst6I | CTCTTC | 1 cut(s) | 422 |
| BstDEI | CTNAG | 2 cut(s) | 48, 245 |
| BstF5I | GGATG | 3 cut(s) | 187, 262, 423 |
| BstH2I | RGCGCY | 1 cut(s) | 168 |
| BstHHI | GCGC | 1 cut(s) | 167 |
| BstKTI | GATC | 4 cut(s) | 33, 226, 320, 456 |
| BstMAI | GTCTC | 1 cut(s) | 79 |
| BstMBI | GATC | 4 cut(s) | 30, 223, 317, 453 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 171 |
| BstNI | CCWGG | 1 cut(s) | 179 |
| BstSCI | CCNGG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BstV2I | GAAGAC | 1 cut(s) | 378 |
| BsuRI | GGCC | 1 cut(s) | 133 |
| BtsCI | GGATG | 3 cut(s) | 187, 262, 423 |
| BtsIMutI | CAGTG | 1 cut(s) | 472 |
| CciI | TCATGA | 2 cut(s) | 340, 385 |
| CfoI | GCGC | 1 cut(s) | 167 |
| Cfr13I | GGNCC | 2 cut(s) | 25, 462 |
| CviAII | CATG | 2 cut(s) | 341, 386 |
| CviJI | RGCY | 8 cut(s) | 133, 215, 251, 268, 331, 383, 432, 491 |
| CviKI_1 | RGCY | 8 cut(s) | 133, 215, 251, 268, 331, 383, 432, 491 |
| DdeI | CTNAG | 2 cut(s) | 48, 245 |
| DpnI | GATC | 4 cut(s) | 32, 225, 319, 455 |
| DpnII | GATC | 4 cut(s) | 30, 223, 317, 453 |
| DraIII | CACNNNGTG | 1 cut(s) | 407 |
| EaeI | YGGCCR | 1 cut(s) | 131 |
| Eam1104I | CTCTTC | 1 cut(s) | 422 |
| EarI | CTCTTC | 1 cut(s) | 422 |
| Eco47I | GGWCC | 2 cut(s) | 25, 462 |
| EcoRI | GAATTC | 1 cut(s) | 98 |
| EcoRII | CCWGG | 1 cut(s) | 177 |
| Esp3I | CGTCTC | 1 cut(s) | 79 |
| FaeI | CATG | 2 cut(s) | 344, 389 |
| FaiI | YATR | 7 cut(s) | 172, 254, 325, 327, 342, 380, 387 |
| FatI | CATG | 2 cut(s) | 340, 385 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| FokI | GGATG | 3 cut(s) | 194, 269, 430 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 1 cut(s) | 332 |
| GlaI | GCGC | 1 cut(s) | 166 |
| GluI | GCNGC | 1 cut(s) | 119 |
| HaeII | RGCGCY | 1 cut(s) | 168 |
| HaeIII | GGCC | 1 cut(s) | 133 |
| HapII | CCGG | 1 cut(s) | 287 |
| HhaI | GCGC | 1 cut(s) | 167 |
| Hin1II | CATG | 2 cut(s) | 344, 389 |
| Hin6I | GCGC | 1 cut(s) | 165 |
| HinP1I | GCGC | 1 cut(s) | 165 |
| HindIII | AAGCTT | 1 cut(s) | 489 |
| HinfI | GANTC | 3 cut(s) | 143, 337, 481 |
| HpaII | CCGG | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 1 cut(s) | 49 |
| Hpy188III | TCNNGA | 6 cut(s) | 55, 227, 276, 341, 386, 412 |
| HpyAV | CCTTC | 1 cut(s) | 436 |
| HpyCH4III | ACNGT | 1 cut(s) | 377 |
| HpyCH4V | TGCA | 4 cut(s) | 121, 174, 209, 401 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 171 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 245 |
| Hsp92II | CATG | 2 cut(s) | 344, 389 |
| HspAI | GCGC | 1 cut(s) | 165 |
| Kzo9I | GATC | 4 cut(s) | 30, 223, 317, 453 |
| LguI | GCTCTTC | 1 cut(s) | 422 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| LpnPI | CCDG | 8 cut(s) | 41, 164, 191, 232, 300, 411, 425, 478 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| MaeI | CTAG | 1 cut(s) | 332 |
| MaeIII | GTNAC | 1 cut(s) | 472 |
| MalI | GATC | 4 cut(s) | 32, 225, 319, 455 |
| MboI | GATC | 4 cut(s) | 30, 223, 317, 453 |
| MboII | GAAGA | 5 cut(s) | 373, 383, 439, 451, 476 |
| MlsI | TGGCCA | 1 cut(s) | 133 |
| MluCI | AATT | 1 cut(s) | 98 |
| MluNI | TGGCCA | 1 cut(s) | 133 |
| MnlI | CCTC | 6 cut(s) | 28, 113, 184, 405, 408, 444 |
| Mox20I | TGGCCA | 1 cut(s) | 133 |
| MscI | TGGCCA | 1 cut(s) | 133 |
| Msp20I | TGGCCA | 1 cut(s) | 133 |
| MspI | CCGG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 1 cut(s) | 179 |
| MvaI | CCWGG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 171 |
| NdeII | GATC | 4 cut(s) | 30, 223, 317, 453 |
| NlaIII | CATG | 2 cut(s) | 344, 389 |
| NmuCI | GTSAC | 1 cut(s) | 472 |
| PagI | TCATGA | 2 cut(s) | 340, 385 |
| PciSI | GCTCTTC | 1 cut(s) | 422 |
| PfeI | GAWTC | 3 cut(s) | 143, 337, 481 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| Psp6I | CCWGG | 1 cut(s) | 177 |
| PspGI | CCWGG | 1 cut(s) | 177 |
| PspPI | GGNCC | 2 cut(s) | 25, 462 |
| SapI | GCTCTTC | 1 cut(s) | 422 |
| SatI | GCNGC | 1 cut(s) | 119 |
| Sau3AI | GATC | 4 cut(s) | 30, 223, 317, 453 |
| Sau96I | GGNCC | 2 cut(s) | 25, 462 |
| ScrFI | CCNGG | 1 cut(s) | 179 |
| SetI | ASST | 6 cut(s) | 39, 270, 333, 385, 447, 493 |
| SinI | GGWCC | 2 cut(s) | 25, 462 |
| Sse9I | AATT | 1 cut(s) | 98 |
| SsiI | CCGC | 1 cut(s) | 23 |
| SspI | AATATT | 1 cut(s) | 238 |
| SspMI | CTAG | 1 cut(s) | 332 |
| StyD4I | CCNGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 377 |
| TaqI | TCGA | 2 cut(s) | 33, 54 |
| TasI | AATT | 1 cut(s) | 98 |
| TfiI | GAWTC | 3 cut(s) | 143, 337, 481 |
| TscAI | CASTG | 1 cut(s) | 472 |
| TseFI | GTSAC | 1 cut(s) | 472 |
| TseI | GCWGC | 1 cut(s) | 118 |
| Tsp45I | GTSAC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 4 cut(s) | 215, 357, 434, 494 |
| TspRI | CASTG | 1 cut(s) | 472 |
| VpaK11BI | GGWCC | 2 cut(s) | 25, 462 |
| XapI | RAATTY | 1 cut(s) | 98 |
| XspI | CTAG | 1 cut(s) | 332 |