Rmu_co8388905.1_g000001

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8388905.1
OG0000145
Physical Location & Seq
Reverse (-)
2 .. 463
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8388905.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atggagaaccagaacatcgagtccatggagatggataagtccggcccttcttcttcgaacgaggagacctctttctctgcgttcttcactgaaaaacgacaactaaagttgcaagacgtctggccggagctggagtcgtctttagatgcctatggcatttcatgcacaattaatcttccccagcgctcagtaacaatctcaaggaccccaacgaccaagggtcgaaactattacgacaaggccaagagtgtcgtcgagcttcttgcaacaactcaagtgccaccgcatctggcactggaagtattgaacggaaattggagatttcatactctaattaagactgggaatcaagaaggtgggttctgctccaagttcggcatcagcccggaccagtttgctaaacgaagggactggcttgccggatccctagaggcaatttcggcactgacgctttgtcatctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

5.92

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AciI CCGC 1 cut(s) 284
AclWI GGATC 2 cut(s) 417, 430
AcoI YGGCCR 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 117
AfeI AGCGCT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 307
AhdI GACNNNNNGTC 2 cut(s) 219, 453
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 2 cut(s) 130, 259
AluI AGCT 2 cut(s) 130, 259
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 417, 430
Aor51HI AGCGCT 1 cut(s) 185
AoxI GGCC 3 cut(s) 43, 122, 240
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 44, 204, 388
AsuC2I CCSGG 1 cut(s) 386
AsuII TTCGAA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 204, 388
BamHI GGATCC 1 cut(s) 422
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 428
BfoI RGCGCY 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 2 cut(s) 204, 388
BmeRI GACNNNNNGTC 2 cut(s) 219, 453
BmgT120I GGNCC 3 cut(s) 44, 204, 388
BmiI GGNNCC 2 cut(s) 206, 424
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 136, 295, 387
BmuI ACTGGG 1 cut(s) 351
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 184, 258
BpuMI CCSGG 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 24, 216
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse1I ACTGG 4 cut(s) 300, 346, 391, 416
BseDI CCNNGG 2 cut(s) 24, 216
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 4 cut(s) 300, 346, 391, 416
BseRI GAGGAG 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 180
BshFI GGCC 3 cut(s) 45, 124, 242
BsiSI CCGG 4 cut(s) 42, 125, 386, 420
BslFI GGGAC 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 3 cut(s) 45, 124, 242
Bso31I GGTCTC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 56
Bsp143I GATC 1 cut(s) 422
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 1 cut(s) 284
BspANI GGCC 3 cut(s) 45, 124, 242
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 206, 424
BspPI GGATC 2 cut(s) 417, 430
BspT104I TTCGAA 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 59
BsrI ACTGG 4 cut(s) 300, 346, 391, 416
BssECI CCNNGG 2 cut(s) 24, 216
BssMI GATC 1 cut(s) 422
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 24, 216
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 162, 440
BstSCI CCNGG 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 3 cut(s) 45, 124, 242
BtgI CCRYGG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 87, 293, 443
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 44, 204, 388
CseI GACGC 1 cut(s) 457
CviAII CATG 2 cut(s) 25, 162
CviJI RGCY 7 cut(s) 45, 124, 130, 242, 259, 384, 415
CviKI_1 RGCY 7 cut(s) 45, 124, 130, 242, 259, 384, 415
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
DriI GACNNNNNGTC 2 cut(s) 219, 453
EaeI YGGCCR 1 cut(s) 122
Eam1105I GACNNNNNGTC 2 cut(s) 219, 453
Eco130I CCWWGG 2 cut(s) 24, 216
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 204, 388
Eco47III AGCGCT 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 24, 216
ErhI CCWWGG 2 cut(s) 24, 216
FaeI CATG 2 cut(s) 28, 165
FaiI YATR 4 cut(s) 26, 153, 163, 327
FaqI GGGAC 1 cut(s) 422
FatI CATG 2 cut(s) 24, 161
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 185
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 45, 124, 242
HapII CCGG 4 cut(s) 42, 125, 386, 420
HgaI GACGC 1 cut(s) 457
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 2 cut(s) 28, 165
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 3 cut(s) 20, 134, 346
HpaII CCGG 4 cut(s) 42, 125, 386, 420
Hpy188III TCNNGA 1 cut(s) 350
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 57, 347, 399
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 112, 165, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 440
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 2 cut(s) 28, 165
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 422
LmnI GCTCC 2 cut(s) 127, 371
LweI GCATC 3 cut(s) 136, 295, 387
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 4 cut(s) 42, 45, 76, 167
MflI RGATCY 1 cut(s) 422
MluCI AATT 4 cut(s) 168, 313, 333, 435
MlyI GAGTC 2 cut(s) 29, 143
MnlI CCTC 3 cut(s) 55, 79, 424
MseI TTAA 2 cut(s) 171, 336
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 4 cut(s) 42, 125, 386, 420
MspR9I CCNGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 162, 440
NciI CCSGG 1 cut(s) 386
NcoI CCATGG 1 cut(s) 24
NdeII GATC 1 cut(s) 422
NlaIII CATG 2 cut(s) 28, 165
NlaIV GGNNCC 2 cut(s) 206, 424
NspV TTCGAA 1 cut(s) 56
PfeI GAWTC 1 cut(s) 346
PleI GAGTC 2 cut(s) 28, 142
PpsI GAGTC 2 cut(s) 28, 142
PpuMI RGGWCCY 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 206, 424
PspPI GGNCC 3 cut(s) 44, 204, 388
PspPPI RGGWCCY 1 cut(s) 204
PsuI RGATCY 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 171, 336
Sau3AI GATC 1 cut(s) 422
Sau96I GGNCC 3 cut(s) 44, 204, 388
SchI GAGTC 2 cut(s) 29, 143
ScrFI CCNGG 1 cut(s) 386
SetI ASST 5 cut(s) 71, 120, 132, 261, 358
SfaNI GCATC 3 cut(s) 136, 295, 387
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 2 cut(s) 204, 388
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 2 cut(s) 199, 273
SmoI CTYRAG 2 cut(s) 199, 273
Sse9I AATT 4 cut(s) 168, 313, 333, 435
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 2 cut(s) 24, 216
TaiI ACGT 1 cut(s) 120
TaqI TCGA 4 cut(s) 18, 56, 223, 255
TasI AATT 4 cut(s) 168, 313, 333, 435
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 171, 336
Tru9I TTAA 2 cut(s) 171, 336
TscAI CASTG 3 cut(s) 94, 300, 450
TspDTI ATGAA 2 cut(s) 150, 314
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 3 cut(s) 94, 300, 450
VpaK11BI GGWCC 2 cut(s) 204, 388
VspI ATTAAT 1 cut(s) 171
XspI CTAG 1 cut(s) 428
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.