Rorug05G0014600

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000145
Physical Location & Seq
Forward (+)
957718 .. 962682
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0014600.1

Sequence Viewer

Length: 1551 bp
ATGAGAGAGCTGGAAGGGCTGTTGTCTCTTCTTGAAGAGAAGAAGAGGAAAATGGAGCTGCAAGAGTCTGAGTCGAGCATGGAGATCATGCTTGGGTTCTTGCATTGCCTTAGAAGGCAAAAGCTAGAGGAGCTCAATGAGATACAAGCTGATCTTGATTACATTAAGGAGGACATGATTGCGGTGGAGAGACGTAGAATTGAACTGTACAGGCAACAACAGAATAGGTCAGTGAGACTGAGAATGCTTGGTGATGATCAGCAGAGCAATGACATTGTCTATAGTGCACAATATGTGCAAGCGCAGATGAGTTCTATCAATTTACATAACAACAGGGCTGTTGTAAATGATGATGTGCAAGACCATACACAGTCTATGCAGCCTGTTACTCCACAAGTACTGTCGGTGGCAAGGAAGAGGCGAGTACATTCACAGTTCAATGACCTACAAGAGTGTTACTTGCAAAAGCGGCGAAATTGGAACAAACAAAGGGATTCATATGCTATGGATATAGAAGATTATAATCCTGGCCTTGAAGACTTCCACTCTGTGCTAAAGGGCTTTACACAGTACAGCCGATTGAGGGTCATTTCTGAACTGAGACAAGGTGATATTTTTCACTCTGCAAATATTGTGTCGAGCATAGAATTTGATCGAGACGAGCAATTGTTTGCTACTGCTGGGGTTTCACGGTGCATCAAGGTTTTTGAGTTTTCCTCGGTTGTTAATGAACCTGAAGATATCCACTGTGCTGTCGAAGAGATATCCACACGATCCAAACTTAGTTGCTTGAGCTGGAATAAGTACACTAAAAACCAAATTGCTAGTAGTGACTACGAGGGGATAGTAACAGTTTGGGATGTAACTACTCGTCAGAGTGTGATGGAATATGAGGAGCATGAAAAGCGAGCTTGGAGTGTTGATTTTTCAAGCACCGATCCTTCAATGCTTGTGTCTGGAAGTGATGACTGCAAGGTCAAAATTTGGTGCACAAATCAAGAAGAAAGTGTTCTGAACATCGACATGAAGGCAAACATTTGTTCTGTCAAGTACAATCCCGGATCCAGCTTTTTCGTGGCAGTTGGTTCTGCAGATCATCACATTCATTATTATGACTTGAGAAATGTCAGCCAACCACTGCATGTGTTTAGCGGGCATAGGAAAGCTGTTTCGTATGTGAAATTCTTGTCTAACAATGAACTTTCTTCTGCATCCACTGACAGCACATTGCGACTGTGGGATGTAAAGGAAAACCTGCCGTTGTGCACGTATAGAGGCCACATGAATGAGAAGAACTTTGTAGGTCTTGCAGTAAACAATGACTACATTGCTTGCGGTAGTGAGACAAACGAAGTGTTCGTTTATCACAAGGGTATCCCAAAACCTATGGCTTGGCATAAATTCGGCTCATCGGATTTAAACTACAACAACGAAGAAGACGATGGTGCAGGGTCATACTTTATCAGTGCTGTATGTTGGAAGAGGGATAGCCCGATGATACTGACGGCGAACAGTCAAGGAACGATTAAAGTTCTTGTACTTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

516

Amino Acids

59.39

Weight (kDa)

5.58

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 207 - 372 3.5e-07 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 209 - 340 2.7e-12 WDR3 first beta-propeller domain
Beta-prop_RIG_2nd PF23775 210 - 293 1.9e-07 RIG second beta-propeller
Beta-prop_WDR5 PF25175 210 - 456 4.3e-33 WDR5 beta-propeller domain
Beta-prop_EIPR1 PF23609 251 - 329 8.7e-06 EIPR1 beta-propeller
WD40_MABP1-WDR62_1st PF24780 256 - 373 9.5e-07 MABP1/WDR62 first WD40 domain
WD40_Gbeta PF25391 256 - 383 2.6e-06 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 257 - 337 1.6e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 258 - 376 3e-16 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 258 - 413 6.1e-19 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 270 - 398 6.1e-13 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML PF23409 277 - 448 6.4e-08 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 293 - 329 8.4e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 311 - 441 2.3e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 316 - 425 1.3e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 341 - 447 6.2e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 343 - 449 1.2e-11 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 344 - 423 1.2e-08 WDHD1 first WD40 domain
WD40_like PF17005 346 - 459 8.6e-06 WD40-like domain
WD40_CDC20-Fz PF24807 350 - 457 8.1e-08 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 360 - 513 3.3e-12 THOC3 beta-propeller domain
WD40 PF00400 378 - 414 6e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 974
Acc36I ACCTGC 1 cut(s) 1263
AciI CCGC 4 cut(s) 182, 469, 1152, 1335
AclWI GGATC 4 cut(s) 768, 932, 1056, 1069
AcsI RAATTY 4 cut(s) 647, 981, 1181, 1400
AcuI CTGAAG 1 cut(s) 756
AdeI CACNNNGTG 1 cut(s) 550
AfaI GTAC 7 cut(s) 209, 399, 426, 572, 806, 1052, 1539
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 6 cut(s) 35, 203, 439, 536, 930, 945
AjnI CCWGG 1 cut(s) 526
Alw21I GWGCWC 4 cut(s) 135, 289, 992, 1268
Alw26I GTCTC 6 cut(s) 30, 184, 229, 595, 651, 1337
Alw44I GTGCAC 3 cut(s) 285, 988, 1264
AlwI GGATC 4 cut(s) 768, 932, 1056, 1069
AoxI GGCC 2 cut(s) 529, 1276
ApaLI GTGCAC 3 cut(s) 285, 988, 1264
ApeKI GCWGC 3 cut(s) 58, 379, 1544
ApoI RAATTY 4 cut(s) 647, 981, 1181, 1400
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 2 cut(s) 263, 620
BaeGI GKGCMC 3 cut(s) 289, 992, 1268
BaeI ACNNNNGTAYC 2 cut(s) 1357, 1390
BamHI GGATCC 1 cut(s) 1061
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 543, 1443
Bbv12I GWGCWC 4 cut(s) 135, 289, 992, 1268
BbvI GCAGC 2 cut(s) 45, 391
BccI CCATC 2 cut(s) 877, 1436
BceAI ACGGC 2 cut(s) 1243, 1521
BciT130I CCWGG 1 cut(s) 528
BciVI GTATCC 1 cut(s) 1385
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 1059
BcoDI GTCTC 6 cut(s) 30, 184, 229, 595, 651, 1337
BfaI CTAG 2 cut(s) 125, 825
BfmI CTRYAG 2 cut(s) 280, 1089
BfuAI ACCTGC 1 cut(s) 1263
BfuI GTATCC 1 cut(s) 1385
BisI GCNGC 4 cut(s) 59, 380, 470, 1545
BlsI GCNGC 4 cut(s) 60, 381, 471, 1546
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 2 cut(s) 528, 1059
BmiI GGNNCC 1 cut(s) 1063
BmrFI CCNGG 2 cut(s) 528, 1059
BmsI GCATC 2 cut(s) 705, 1220
BpiI GAAGAC 2 cut(s) 543, 1443
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpuEI CTTGAG 2 cut(s) 811, 1138
BpuMI CCSGG 1 cut(s) 1059
BsaAI YACGTR 1 cut(s) 1269
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 717
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse3DI GCAATG 4 cut(s) 103, 274, 1226, 1326
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 3 cut(s) 865, 1211, 1246
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 4 cut(s) 103, 274, 1226, 1326
BseMII CTCAG 3 cut(s) 60, 230, 590
BseRI GAGGAG 2 cut(s) 143, 908
BseSI GKGCMC 3 cut(s) 289, 992, 1268
BseXI GCAGC 2 cut(s) 45, 391
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 1467
BshFI GGCC 2 cut(s) 531, 1278
BsiHKAI GWGCWC 4 cut(s) 135, 289, 992, 1268
BsiSI CCGG 1 cut(s) 1059
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 6 cut(s) 30, 184, 229, 595, 651, 1337
BsmBI CGTCTC 2 cut(s) 184, 651
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 531, 1278
Bsp1286I GDGCHC 4 cut(s) 135, 289, 992, 1268
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
BspACI CCGC 4 cut(s) 182, 469, 1152, 1335
BspANI GGCC 2 cut(s) 531, 1278
BspCNI CTCAG 3 cut(s) 61, 231, 591
BspLI GGNNCC 1 cut(s) 1063
BspMAI CTGCAG 1 cut(s) 1093
BspMI ACCTGC 1 cut(s) 1263
BspPI GGATC 4 cut(s) 768, 932, 1056, 1069
BsrDI GCAATG 4 cut(s) 103, 274, 1226, 1326
BsrGI TGTACA 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
Bst2UI CCWGG 1 cut(s) 528
Bst6I CTCTTC 6 cut(s) 30, 33, 38, 410, 753, 1475
BstAUI TGTACA 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 1269
BstC8I GCNNGC 4 cut(s) 300, 909, 1154, 1333
BstDEI CTNAG 5 cut(s) 69, 110, 239, 599, 782
BstF5I GGATG 3 cut(s) 865, 1211, 1246
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 8 cut(s) 87, 154, 259, 655, 776, 940, 1064, 1096
BstMAI GTCTC 6 cut(s) 30, 184, 229, 595, 651, 1337
BstMBI GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 16, 130, 469, 904
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 1145
BstSCI CCNGG 2 cut(s) 526, 1057
BstSFI CTRYAG 2 cut(s) 280, 1089
BstSLI GKGCMC 3 cut(s) 289, 992, 1268
BstV1I GCAGC 2 cut(s) 45, 391
BstV2I GAAGAC 2 cut(s) 543, 1443
BstX2I RGATCY 1 cut(s) 1061
BstYI RGATCY 1 cut(s) 1061
BsuI GTATCC 1 cut(s) 1385
BsuRI GGCC 2 cut(s) 531, 1278
BtsCI GGATG 3 cut(s) 865, 1211, 1246
BtsI GCAGTG 1 cut(s) 1136
BtsIMutI CAGTG 5 cut(s) 237, 745, 1136, 1215, 1471
BveI ACCTGC 1 cut(s) 1263
Cac8I GCNNGC 4 cut(s) 300, 909, 1154, 1333
CfoI GCGC 1 cut(s) 304
Csp6I GTAC 7 cut(s) 208, 398, 425, 571, 805, 1051, 1538
CviAII CATG 7 cut(s) 79, 88, 175, 899, 1024, 1142, 1282
CviQI GTAC 7 cut(s) 208, 398, 425, 571, 805, 1051, 1538
DdeI CTNAG 5 cut(s) 69, 110, 239, 599, 782
DpnI GATC 8 cut(s) 86, 153, 258, 654, 775, 939, 1063, 1095
DpnII GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
DraI TTTAAA 1 cut(s) 1419
DraIII CACNNNGTG 1 cut(s) 550
DrdI GACNNNNNNGTC 1 cut(s) 974
DseDI GACNNNNNNGTC 1 cut(s) 974
Eam1104I CTCTTC 6 cut(s) 30, 33, 38, 410, 753, 1475
EarI CTCTTC 6 cut(s) 30, 33, 38, 410, 753, 1475
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco32I GATATC 2 cut(s) 742, 765
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 756
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 526
EcoRV GATATC 2 cut(s) 742, 765
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 2 cut(s) 184, 651
FaeI CATG 7 cut(s) 82, 91, 178, 902, 1027, 1145, 1285
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 7 cut(s) 78, 87, 174, 898, 1023, 1141, 1281
FauI CCCGC 1 cut(s) 1145
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 59, 380, 470, 1545
FokI GGATG 3 cut(s) 872, 1198, 1253
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 59, 380, 470, 1545
FspBI CTAG 2 cut(s) 125, 825
GlaI GCGC 1 cut(s) 303
GluI GCNGC 4 cut(s) 59, 380, 470, 1545
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 2 cut(s) 531, 1278
HapII CCGG 1 cut(s) 1059
HhaI GCGC 1 cut(s) 304
Hin1II CATG 7 cut(s) 82, 91, 178, 902, 1027, 1145, 1285
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 3 cut(s) 65, 71, 494
HpaII CCGG 1 cut(s) 1059
HphI GGTGA 2 cut(s) 263, 620
Hpy166II GTNNAC 5 cut(s) 287, 807, 990, 1266, 1315
Hpy188I TCNGA 5 cut(s) 70, 595, 876, 1014, 1414
Hpy188III TCNNGA 5 cut(s) 32, 155, 656, 957, 998
Hpy8I GTNNAC 5 cut(s) 287, 807, 990, 1266, 1315
HpyAV CCTTC 4 cut(s) 8, 108, 951, 1021
HpyCH4IV ACGT 2 cut(s) 193, 1268
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 130, 469, 904
HpyF3I CTNAG 5 cut(s) 69, 110, 239, 599, 782
HpySE526I ACGT 2 cut(s) 193, 1268
Hsp92II CATG 7 cut(s) 82, 91, 178, 902, 1027, 1145, 1285
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
LmnI GCTCC 3 cut(s) 55, 130, 895
Lsp1109I GCAGC 2 cut(s) 45, 391
LweI GCATC 2 cut(s) 705, 1220
MaeI CTAG 2 cut(s) 125, 825
MaeII ACGT 2 cut(s) 193, 1268
MaeIII GTNAC 5 cut(s) 385, 455, 830, 847, 862
MalI GATC 8 cut(s) 86, 153, 258, 654, 775, 939, 1063, 1095
MboI GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
MfeI CAATTG 1 cut(s) 665
MflI RGATCY 1 cut(s) 1061
MhlI GDGCHC 4 cut(s) 135, 289, 992, 1268
MluCI AATT 9 cut(s) 198, 319, 475, 647, 665, 819, 981, 1181, 1400
MlyI GAGTC 2 cut(s) 74, 80
MmeI TCCRAC 1 cut(s) 1457
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 4 cut(s) 165, 726, 1418, 1527
MslI CAYNNNNRTG 3 cut(s) 1022, 1110, 1284
MspI CCGG 1 cut(s) 1059
MspR9I CCNGG 2 cut(s) 528, 1059
MunI CAATTG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 4 cut(s) 16, 130, 469, 904
NciI CCSGG 1 cut(s) 1059
NdeI CATATG 1 cut(s) 499
NdeII GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
NlaIII CATG 7 cut(s) 82, 91, 178, 902, 1027, 1145, 1285
NlaIV GGNNCC 1 cut(s) 1063
NmuCI GTSAC 1 cut(s) 830
NspI RCATGY 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 2 cut(s) 1356, 1437
PctI GAATGC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 494
PflFI GACNNNGTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 1057
PkrI GCNGC 4 cut(s) 60, 381, 471, 1546
PleI GAGTC 2 cut(s) 73, 79
PpsI GAGTC 2 cut(s) 73, 79
Ppu21I YACGTR 1 cut(s) 1269
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 1063
PstI CTGCAG 1 cut(s) 1093
PsuI RGATCY 1 cut(s) 1061
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 7 cut(s) 209, 399, 426, 572, 806, 1052, 1539
RsaNI GTAC 7 cut(s) 208, 398, 425, 571, 805, 1051, 1538
RseI CAYNNNNRTG 3 cut(s) 1022, 1110, 1284
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 4 cut(s) 165, 726, 1418, 1527
SatI GCNGC 4 cut(s) 59, 380, 470, 1545
Sau3AI GATC 8 cut(s) 84, 151, 256, 652, 773, 937, 1061, 1093
ScaI AGTACT 1 cut(s) 399
SchI GAGTC 2 cut(s) 74, 80
ScrFI CCNGG 2 cut(s) 528, 1059
SduI GDGCHC 4 cut(s) 135, 289, 992, 1268
SfaNI GCATC 2 cut(s) 705, 1220
SfcI CTRYAG 2 cut(s) 280, 1089
SmiMI CAYNNNNRTG 3 cut(s) 1022, 1110, 1284
SmlI CTYRAG 2 cut(s) 790, 1117
SmoI CTYRAG 2 cut(s) 790, 1117
Sse9I AATT 9 cut(s) 198, 319, 475, 647, 665, 819, 981, 1181, 1400
SsiI CCGC 4 cut(s) 182, 469, 1152, 1335
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 125, 825
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 526, 1057
TaiI ACGT 2 cut(s) 196, 1271
TaqI TCGA 5 cut(s) 74, 638, 655, 756, 1020
TasI AATT 9 cut(s) 198, 319, 475, 647, 665, 819, 981, 1181, 1400
TatI WGTACW 7 cut(s) 207, 397, 424, 570, 804, 1050, 1537
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 4 cut(s) 165, 726, 1418, 1527
Tru9I TTAA 4 cut(s) 165, 726, 1418, 1527
TscAI CASTG 5 cut(s) 237, 752, 1143, 1222, 1471
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 3 cut(s) 58, 379, 1544
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 7 cut(s) 486, 744, 915, 1040, 1094, 1212, 1298
TspRI CASTG 5 cut(s) 237, 752, 1143, 1222, 1471
Tth111I GACNNNGTC 1 cut(s) 275
VneI GTGCAC 3 cut(s) 285, 988, 1264
XapI RAATTY 4 cut(s) 647, 981, 1181, 1400
XceI RCATGY 1 cut(s) 1145
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 2 cut(s) 125, 825
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.