Rw7G009350

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000145
Physical Location & Seq
Reverse (-)
8770806 .. 8775267
4462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009350.1

Sequence Viewer

Length: 1269 bp
ATGGAGAAGAGAGAAAACGGCGTCGTTGAGCACATGCAGATCGACCGGTCGGCCCCTTCCTGCAACGAGACTTCTTTCTCTGCCCTATTCCATGAAAAACGAGAAAAGAAGTTGCAAGATGCTTGGCCGATGCTGGAATCGTCTTTCGAAGAGTTTGGCGTTTCATGTGCACTGAATCTGGCTGAGCGTTCCGTGATAGTCTCAACAACTGGAAGGACTAAGGGCCGGAATTCTTTTGATAAGGCTACACGCATCGTTGAACTTTTGGCAACAACTCATGTTCCACCATATCTGGCAATAGAAATACTAAATGGTGATCGGAAACATATCCTCATCAAAACTGGGAATCAACAAGGTGGGCTTTGCTCCATATATGGGATCAAGAAGGATCAATTTGTTAAACAACGGGACTGTCTTGCCTGCTCCCTAGAGGCACTTGCAGCACTGACATTTTGTTATCTTTTTCTTAATGAAGACACTGTTGCTGCAGTGGGAGACCCTCTAGCTTTAATGGCAATCAGGAAGCTTGTCGTAGGCTGCATTGTTAACAATGTGGATCCTGCAACAACTATCAGTGAGGTTAAAACTGTCTTGAGGAGGAGACAAGGAGTGGAAAATCTTCAACACCCAAATGTCGATTACTTGAGAATGGAGAACTCTGGCCCTTCCTTGGATCTGTATGGCATGCTTGAAGTAACCTCTTTCTCTATGACCTGCTATATAGGCCGAGAAAAAGTGGTGCAAGAAGCTTTGCCATTTTTGCAATCGTTTTTAGAAGAGTATGGCATTTCATGCACTCTGAATATGGCTGAGCGTTCCATGACACTTTCAACTACCAGAAGAACCAAGGATCCTGATGTTATGGACAAGGCTGTCATTCTTGTTGAGCTTCTGGCAAGAACTAGTATTCCGGCATGTAAGGCAATAGAAATCCTGCACAGCCGCCTGCAACATGAAGTCATCAAGACTGGGTTTCAAGAAGGTGGACTTTGCTCTAAATATGGAATCAAGAAGGAGCGATTTGTTAAAAACAAGGACCGATTCAAGTGCTACTTGCAGACACTGGCACGCCTGTCAAAGTGTGAGATTTACATTAATGAATCCAGTGTTGTTGCAGTGGGAACTTCAGGTGCAGGATTAAGGCAGTTCAGGTCAATTGTCGAGTGCTGCTTCGTTAAAGATGAAGATCCCGCTACCATTGTTAGGAGGTTGAAATTGAATGGGGAAACCTACCGATTAATGAAGAAGCTTGAGGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

47.35

Weight (kDa)

8.5

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 25 - 91 3.3e-07 Krr1 KH1 domain
KH_KRR1_2nd PF21800 128 - 193 6.9e-09 KRR1 small subunit processome component, second KH domain
KH_KRR1_1st PF17903 243 - 312 3.6e-10 Krr1 KH1 domain
KH_KRR1_2nd PF21800 337 - 404 4.7e-06 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 722
AciI CCGC 2 cut(s) 943, 1191
AclWI GGATC 8 cut(s) 386, 396, 551, 564, 681, 845, 858, 1181
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 1110
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 3 cut(s) 375, 670, 1203
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 8 cut(s) 260, 623, 692, 831, 977, 1045, 1213, 1219
AhlI ACTAGT 1 cut(s) 902
AloI GAACNNNNNNTCC 4 cut(s) 835, 867, 892, 924
AluBI AGCT 5 cut(s) 506, 526, 749, 889, 1249
AluI AGCT 5 cut(s) 506, 526, 749, 889, 1249
Alw21I GWGCWC 2 cut(s) 33, 172
Alw26I GTCTC 4 cut(s) 62, 205, 489, 595
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 8 cut(s) 386, 396, 551, 564, 681, 845, 858, 1181
AlwNI CAGNNNCTG 1 cut(s) 1063
AoxI GGCC 5 cut(s) 51, 125, 223, 661, 724
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 4 cut(s) 440, 485, 537, 1167
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 2 cut(s) 1095, 1238
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 4 cut(s) 52, 223, 662, 1036
AsuHPI GGTGA 1 cut(s) 326
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 1036
BaeGI GKGCMC 1 cut(s) 172
BamHI GGATCC 2 cut(s) 556, 850
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 2 cut(s) 33, 172
BbvI GCAGC 4 cut(s) 452, 472, 524, 1154
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 1029, 1063
BcoDI GTCTC 4 cut(s) 62, 205, 489, 595
BcuI ACTAGT 1 cut(s) 902
BfaI CTAG 3 cut(s) 428, 503, 903
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 722
BisI GCNGC 5 cut(s) 441, 486, 538, 943, 1168
BlpI GCTNAGC 2 cut(s) 183, 810
BlsI GCNGC 5 cut(s) 442, 487, 539, 944, 1169
Bme18I GGWCC 1 cut(s) 1036
BmgT120I GGNCC 4 cut(s) 52, 223, 662, 1036
BmiI GGNNCC 3 cut(s) 54, 558, 852
BmrI ACTGGG 2 cut(s) 351, 978
BmsI GCATC 3 cut(s) 109, 120, 261
BmuI ACTGGG 2 cut(s) 351, 978
BpiI GAAGAC 1 cut(s) 480
Bpu1102I GCTNAGC 2 cut(s) 183, 810
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 613, 664
BsaBI GATNNNNATC 1 cut(s) 1185
BsaHI GRCGYC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 669, 846
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 670, 1203
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 5 cut(s) 214, 346, 973, 1068, 1104
Bse8I GATNNNNATC 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 669, 846
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 3 cut(s) 375, 670, 1203
BseMII CTCAG 2 cut(s) 174, 801
BseNI ACTGG 5 cut(s) 214, 346, 973, 1068, 1104
BseRI GAGGAG 2 cut(s) 610, 613
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 4 cut(s) 452, 472, 524, 1154
BsgI GTGCAG 2 cut(s) 920, 1152
Bsh1285I CGRYCG 2 cut(s) 46, 50
BshFI GGCC 5 cut(s) 53, 127, 225, 663, 726
BshTI ACCGGT 1 cut(s) 45
BsiEI CGRYCG 2 cut(s) 46, 50
BsiHKAI GWGCWC 2 cut(s) 33, 172
BsiSI CCGG 3 cut(s) 46, 226, 911
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 3 cut(s) 375, 670, 1203
BsmAI GTCTC 4 cut(s) 62, 205, 489, 595
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 5 cut(s) 53, 127, 225, 663, 726
Bso31I GGTCTC 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 33, 172
Bsp143I GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
Bsp1720I GCTNAGC 2 cut(s) 183, 810
BspACI CCGC 2 cut(s) 943, 1191
BspANI GGCC 5 cut(s) 53, 127, 225, 663, 726
BspCNI CTCAG 2 cut(s) 175, 802
BspLI GGNNCC 3 cut(s) 54, 558, 852
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 722
BspPI GGATC 8 cut(s) 386, 396, 551, 564, 681, 845, 858, 1181
BspT104I TTCGAA 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 5 cut(s) 214, 346, 973, 1068, 1104
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 669, 846
BssMI GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 669, 846
Bst4CI ACNGT 3 cut(s) 413, 481, 589
Bst6I CTCTTC 3 cut(s) 2, 144, 771
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 792
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 4 cut(s) 421, 686, 947, 1069
BstDEI CTNAG 3 cut(s) 183, 219, 810
BstKTI GATC 8 cut(s) 42, 319, 381, 391, 559, 676, 853, 1189
BstMAI GTCTC 4 cut(s) 62, 205, 489, 595
BstMBI GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
BstMCI CGRYCG 2 cut(s) 46, 50
BstMWI GCNNNNNNNGC 6 cut(s) 440, 512, 723, 760, 792, 920
BstNSI RCATGY 3 cut(s) 37, 688, 918
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 4 cut(s) 452, 472, 524, 1154
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 4 cut(s) 556, 673, 850, 1186
BstYI RGATCY 4 cut(s) 556, 673, 850, 1186
BsuRI GGCC 5 cut(s) 53, 127, 225, 663, 726
BtsI GCAGTG 2 cut(s) 495, 1122
BtsIMutI CAGTG 8 cut(s) 170, 443, 477, 495, 580, 1061, 1111, 1122
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 4 cut(s) 421, 686, 947, 1069
CaiI CAGNNNCTG 1 cut(s) 1063
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 4 cut(s) 52, 223, 662, 1036
CseI GACGC 1 cut(s) 10
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 9 cut(s) 34, 92, 165, 278, 685, 792, 820, 915, 953
DdeI CTNAG 3 cut(s) 183, 219, 810
DpnI GATC 8 cut(s) 41, 318, 380, 390, 558, 675, 852, 1188
DpnII GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 2, 144, 771
EarI CTCTTC 3 cut(s) 2, 144, 771
Eco130I CCWWGG 2 cut(s) 669, 846
Eco31I GGTCTC 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 1036
Eco57I CTGAAG 1 cut(s) 1110
EcoRI GAATTC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 669, 846
ErhI CCWWGG 2 cut(s) 669, 846
FaeI CATG 9 cut(s) 37, 95, 168, 281, 688, 795, 823, 918, 956
FalI AAGNNNNNCTT 6 cut(s) 345, 377, 972, 1004, 1037, 1069
FaqI GGGAC 1 cut(s) 422
FatI CATG 9 cut(s) 33, 91, 164, 277, 684, 791, 819, 914, 952
FauI CCCGC 1 cut(s) 1198
Fnu4HI GCNGC 5 cut(s) 441, 486, 538, 943, 1168
Fsp4HI GCNGC 5 cut(s) 441, 486, 538, 943, 1168
FspBI CTAG 3 cut(s) 428, 503, 903
GluI GCNGC 5 cut(s) 441, 486, 538, 943, 1168
HaeIII GGCC 5 cut(s) 53, 127, 225, 663, 726
HapII CCGG 3 cut(s) 46, 226, 911
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 9 cut(s) 37, 95, 168, 281, 688, 795, 823, 918, 956
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 3 cut(s) 524, 747, 1247
HinfI GANTC 6 cut(s) 137, 175, 346, 1005, 1041, 1100
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 3 cut(s) 46, 226, 911
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 3 cut(s) 170, 547, 986
Hpy188I TCNGA 2 cut(s) 321, 801
Hpy188III TCNNGA 7 cut(s) 382, 520, 592, 854, 964, 977, 1009
Hpy8I GTNNAC 3 cut(s) 170, 547, 986
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 6 cut(s) 66, 207, 379, 675, 974, 1006
HpyCH4III ACNGT 3 cut(s) 413, 481, 589
HpyF10VI GCNNNNNNNGC 6 cut(s) 440, 512, 723, 760, 792, 920
HpyF3I CTNAG 3 cut(s) 183, 219, 810
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 9 cut(s) 37, 95, 168, 281, 688, 795, 823, 918, 956
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
LmnI GCTCC 3 cut(s) 371, 428, 1015
Lsp1109I GCAGC 4 cut(s) 452, 472, 524, 1154
LweI GCATC 3 cut(s) 109, 120, 261
MaeI CTAG 3 cut(s) 428, 503, 903
MaeIII GTNAC 1 cut(s) 694
MalI GATC 8 cut(s) 41, 318, 380, 390, 558, 675, 852, 1188
MboI GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
MboII GAAGA 8 cut(s) 19, 161, 485, 611, 788, 852, 1196, 1255
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 4 cut(s) 556, 673, 850, 1186
MhlI GDGCHC 2 cut(s) 33, 172
MluCI AATT 4 cut(s) 229, 392, 1155, 1214
MnlI CCTC 9 cut(s) 341, 424, 510, 571, 588, 591, 709, 1200, 1246
MroXI GAANNNNTTC 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 630
MspI CCGG 3 cut(s) 46, 226, 911
MunI CAATTG 1 cut(s) 1155
MwoI GCNNNNNNNGC 6 cut(s) 440, 512, 723, 760, 792, 920
NdeII GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
NlaIII CATG 9 cut(s) 37, 95, 168, 281, 688, 795, 823, 918, 956
NlaIV GGNNCC 3 cut(s) 54, 558, 852
NmeAIII GCCGAG 1 cut(s) 752
NspI RCATGY 3 cut(s) 37, 688, 918
NspV TTCGAA 1 cut(s) 147
PaeI GCATGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 6 cut(s) 137, 175, 346, 1005, 1041, 1100
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 5 cut(s) 442, 487, 539, 944, 1169
PshBI ATTAAT 2 cut(s) 1095, 1238
PspN4I GGNNCC 3 cut(s) 54, 558, 852
PspPI GGNCC 4 cut(s) 52, 223, 662, 1036
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 1063
PsuI RGATCY 4 cut(s) 556, 673, 850, 1186
RseI CAYNNNNRTG 1 cut(s) 630
SatI GCNGC 5 cut(s) 441, 486, 538, 943, 1168
Sau3AI GATC 8 cut(s) 39, 316, 378, 388, 556, 673, 850, 1186
Sau96I GGNCC 4 cut(s) 52, 223, 662, 1036
SduI GDGCHC 2 cut(s) 33, 172
SfaNI GCATC 3 cut(s) 109, 120, 261
SfcI CTRYAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 1036
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 592, 643, 1250
SmoI CTYRAG 3 cut(s) 592, 643, 1250
SpeI ACTAGT 1 cut(s) 902
SphI GCATGC 1 cut(s) 688
Sse9I AATT 4 cut(s) 229, 392, 1155, 1214
SsiI CCGC 2 cut(s) 943, 1191
SspMI CTAG 3 cut(s) 428, 503, 903
StyI CCWWGG 2 cut(s) 669, 846
TaaI ACNGT 3 cut(s) 413, 481, 589
TaqI TCGA 4 cut(s) 42, 147, 636, 1161
TaqII GACCGA 1 cut(s) 1053
TasI AATT 4 cut(s) 229, 392, 1155, 1214
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 6 cut(s) 137, 175, 346, 1005, 1041, 1100
TscAI CASTG 8 cut(s) 177, 450, 484, 495, 580, 1068, 1111, 1122
TseI GCWGC 4 cut(s) 440, 485, 537, 1167
TspDTI ATGAA 8 cut(s) 108, 153, 486, 780, 969, 1113, 1197, 1256
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 8 cut(s) 177, 450, 484, 495, 580, 1068, 1111, 1122
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 1036
VspI ATTAAT 2 cut(s) 1095, 1238
XapI RAATTY 1 cut(s) 229
XceI RCATGY 3 cut(s) 37, 688, 918
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 428, 503, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.