Rh5BG105500

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000145
Physical Location & Seq
Reverse (-)
9680010 .. 9697876
17867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG105500.1

Sequence Viewer

Length: 933 bp
ATGTCGGAAGATTACCCAAACGCCGATTACCCAAACGCCATTGTTCTGCAGCTCGAGGAGGCTCTGATGGTCCAAGATGAAATTGAAGTCGTCTCTTACATCAAGTTCTACGATCGATTCCTTGGGGCTGAAGATGAAGACATAATTTTCAAGGCAATTGATATTTTGCAGCTTTTGTCGAGAAGTGTTCCAGCACGTTGGGCAAAACGAACGCTGGATTGTAGTTGGCAACATGAGATCATCAAGATTGGGAATCAAGAAGGGGGGATTTGCAACATATTTGGGATCAGTAAGGAGCAATTTCTTGCACGGAGGAATCTTCTCGCTGGTGTCATAAAGGGACTTTTTGAACTTACTGGCTGTGGCGTTTTTCTTAAGGGAAATACCATTGCTCTTATTGGTCCACTGCAAGGAATAAAGACGATAACAAAGATTGTGGAAGACTGCATCGCTCACAATGTGCCTCCTGCACCCCGTGTGCGGAGGATTAAAAAGAAGACTCAACTGATGAAGGATGCGAGGATTAAAATGACAAGTGAAGTGATGAAGAGTCTCGAGGCTTTTCATGCAATAAAGATTCTAGATTGCAGTTGCCAACATGACATCATTAAGATTGGGAATCAAGAAGACGGTCTTTGCAGGATATTTGGGATCAATAAGGAGCAATTTCTTGCACGGAGAGCACTTCTCATGGGTGGTGTCATGAAGGGACTAGTTGATGTGACGGATTGTGGTATTTTTCTCAAGGGAAACACTATTGCTGTCCTGGGTTCACTTCATGGATTAAAGACGATAAGGAAGATTGTGGAAGACTGTATAGCTCATGATGTGCCTCCTGCACCCCGTGTCCAGAGGATGAAAAAGAAGAGCCAAGCGAAGAAGGTTAGGAGGATCAAAAGGACCAAAATGGAGAATCGTTCTGAAACTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.89

Weight (kDa)

9.33

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 96 - 171 4.3e-12 KRR1 small subunit processome component, second KH domain
KH_KRR1_2nd PF21800 201 - 289 9.2e-13 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 481
AclWI GGATC 3 cut(s) 293, 659, 899
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 3 cut(s) 460, 476, 845
AfiI CCNNNNNNNGG 2 cut(s) 410, 480
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 86, 151, 350
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 3 cut(s) 52, 172, 821
AluI AGCT 3 cut(s) 52, 172, 821
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 97, 557
AlwI GGATC 3 cut(s) 293, 659, 899
Ama87I CYCGRG 2 cut(s) 53, 554
ApeKI GCWGC 2 cut(s) 49, 169
AspS9I GGNCC 3 cut(s) 70, 401, 900
AvaI CYCGRG 2 cut(s) 53, 554
AvaII GGWCC 3 cut(s) 70, 401, 900
BbsI GAAGAC 5 cut(s) 144, 447, 503, 633, 816
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 2 cut(s) 61, 181
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 97, 557
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 2 cut(s) 581, 713
BfmI CTRYAG 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 50, 170
BlsI GCNGC 2 cut(s) 51, 171
Bme1390I CCNGG 1 cut(s) 767
Bme18I GGWCC 3 cut(s) 70, 401, 900
BmeT110I CYCGRG 2 cut(s) 53, 554
BmgT120I GGNCC 3 cut(s) 70, 401, 900
BmrFI CCNGG 1 cut(s) 767
BmsI GCATC 2 cut(s) 456, 505
BpiI GAAGAC 5 cut(s) 144, 447, 503, 633, 816
BplI GAGNNNNNCTC 2 cut(s) 672, 704
BpuEI CTTGAG 1 cut(s) 728
Bsa29I ATCGAT 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 121, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 480
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 767
BseCI ATCGAT 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 121, 766
BseGI GGATG 2 cut(s) 520, 861
BseLI CCNNNNNNNGG 2 cut(s) 410, 480
BseMI GCAATG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 61, 181
BsgI GTGCAG 2 cut(s) 453, 822
Bsh1285I CGRYCG 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 685
BsiHKCI CYCGRG 2 cut(s) 53, 554
BslFI GGGAC 2 cut(s) 354, 723
BslI CCNNNNNNNGG 2 cut(s) 410, 480
BsmAI GTCTC 2 cut(s) 97, 557
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 2 cut(s) 354, 723
BsoBI CYCGRG 2 cut(s) 53, 554
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 5 cut(s) 112, 237, 285, 651, 891
BspACI CCGC 1 cut(s) 481
BspDI ATCGAT 1 cut(s) 115
BspHI TCATGA 2 cut(s) 702, 823
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 3 cut(s) 293, 659, 899
BspQI GCTCTTC 1 cut(s) 860
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 121, 766
BssMI GATC 5 cut(s) 112, 237, 285, 651, 891
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 632, 815
Bst6I CTCTTC 2 cut(s) 542, 860
BstAFI CTTAAG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 520, 861
BstKTI GATC 5 cut(s) 115, 240, 288, 654, 894
BstMAI GTCTC 2 cut(s) 97, 557
BstMBI GATC 5 cut(s) 112, 237, 285, 651, 891
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 200, 566, 680
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 765
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 61, 181
BstV2I GAAGAC 5 cut(s) 144, 447, 503, 633, 816
BstXI CCANNNNNNTGG 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 115
BsuTUI ATCGAT 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 433
BtsCI GGATG 2 cut(s) 520, 861
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 404
CciI TCATGA 2 cut(s) 702, 823
Cfr13I GGNCC 3 cut(s) 70, 401, 900
ClaI ATCGAT 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 7 cut(s) 233, 566, 599, 691, 703, 779, 824
CviJI RGCY 8 cut(s) 52, 62, 128, 172, 360, 560, 821, 870
CviKI_1 RGCY 8 cut(s) 52, 62, 128, 172, 360, 560, 821, 870
DpnI GATC 5 cut(s) 114, 239, 287, 653, 893
DpnII GATC 5 cut(s) 112, 237, 285, 651, 891
DraIII CACNNNGTG 3 cut(s) 460, 476, 845
Eam1104I CTCTTC 2 cut(s) 542, 860
EarI CTCTTC 2 cut(s) 542, 860
Eco130I CCWWGG 1 cut(s) 121
Eco47I GGWCC 3 cut(s) 70, 401, 900
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 53, 554
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 7 cut(s) 236, 569, 602, 694, 706, 782, 827
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 2 cut(s) 354, 723
FatI CATG 7 cut(s) 232, 565, 598, 690, 702, 778, 823
Fnu4HI GCNGC 2 cut(s) 50, 170
FokI GGATG 2 cut(s) 527, 868
Fsp4HI GCNGC 2 cut(s) 50, 170
FspBI CTAG 2 cut(s) 581, 713
GluI GCNGC 2 cut(s) 50, 170
Hin1II CATG 7 cut(s) 236, 569, 602, 694, 706, 782, 827
HinfI GANTC 8 cut(s) 117, 253, 316, 499, 550, 577, 619, 913
Hpy166II GTNNAC 2 cut(s) 404, 773
Hpy188I TCNGA 3 cut(s) 7, 66, 922
Hpy188III TCNNGA 9 cut(s) 180, 244, 257, 554, 581, 623, 703, 824, 850
Hpy8I GTNNAC 2 cut(s) 404, 773
HpyAV CCTTC 4 cut(s) 254, 505, 700, 874
HpyCH4III ACNGT 2 cut(s) 632, 815
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 566, 680
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 7 cut(s) 236, 569, 602, 694, 706, 782, 827
Kzo9I GATC 5 cut(s) 112, 237, 285, 651, 891
LguI GCTCTTC 1 cut(s) 860
LmnI GCTCC 2 cut(s) 295, 661
Lsp1109I GCAGC 2 cut(s) 61, 181
LweI GCATC 2 cut(s) 456, 505
MaeI CTAG 2 cut(s) 581, 713
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 721
MalI GATC 5 cut(s) 114, 239, 287, 653, 893
MboI GATC 5 cut(s) 112, 237, 285, 651, 891
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 5 cut(s) 81, 144, 156, 299, 665
MlyI GAGTC 2 cut(s) 493, 559
MseI TTAA 6 cut(s) 375, 489, 525, 609, 785, 931
MspCI CTTAAG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 767
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 3 cut(s) 200, 566, 680
NdeII GATC 5 cut(s) 112, 237, 285, 651, 891
NlaIII CATG 7 cut(s) 236, 569, 602, 694, 706, 782, 827
NmuCI GTSAC 1 cut(s) 721
PaeR7I CTCGAG 2 cut(s) 53, 554
PagI TCATGA 2 cut(s) 702, 823
PciSI GCTCTTC 1 cut(s) 860
PfeI GAWTC 6 cut(s) 117, 253, 316, 577, 619, 913
PkrI GCNGC 2 cut(s) 51, 171
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 2 cut(s) 493, 558
PpsI GAGTC 2 cut(s) 493, 558
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspPI GGNCC 3 cut(s) 70, 401, 900
PspXI VCTCGAGB 1 cut(s) 53
PstI CTGCAG 1 cut(s) 51
PvuI CGATCG 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 860
SaqAI TTAA 6 cut(s) 375, 489, 525, 609, 785, 931
SatI GCNGC 2 cut(s) 50, 170
Sau3AI GATC 5 cut(s) 112, 237, 285, 651, 891
Sau96I GGNCC 3 cut(s) 70, 401, 900
SchI GAGTC 2 cut(s) 493, 559
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 1 cut(s) 685
SetI ASST 5 cut(s) 54, 174, 199, 823, 885
SfaNI GCATC 2 cut(s) 456, 505
SfcI CTRYAG 1 cut(s) 47
Sfr274I CTCGAG 2 cut(s) 53, 554
SinI GGWCC 3 cut(s) 70, 401, 900
SlaI CTCGAG 2 cut(s) 53, 554
SmlI CTYRAG 4 cut(s) 53, 374, 554, 743
SmoI CTYRAG 4 cut(s) 53, 374, 554, 743
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 5 cut(s) 81, 144, 156, 299, 665
SsiI CCGC 1 cut(s) 481
SspMI CTAG 2 cut(s) 581, 713
StyD4I CCNGG 1 cut(s) 765
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 632, 815
TaiI ACGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 54, 115, 179, 555
TasI AATT 5 cut(s) 81, 144, 156, 299, 665
TfiI GAWTC 6 cut(s) 117, 253, 316, 577, 619, 913
Tru1I TTAA 6 cut(s) 375, 489, 525, 609, 785, 931
Tru9I TTAA 6 cut(s) 375, 489, 525, 609, 785, 931
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 2 cut(s) 49, 169
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 8 cut(s) 93, 150, 524, 554, 560, 719, 767, 872
TspGWI ACGGA 3 cut(s) 325, 691, 740
TspRI CASTG 1 cut(s) 411
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 3 cut(s) 70, 401, 900
XbaI TCTAGA 1 cut(s) 580
XhoI CTCGAG 2 cut(s) 53, 554
XspI CTAG 2 cut(s) 581, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.