Rorug06G0502700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000145
Physical Location & Seq
Forward (+)
61751885 .. 61752712
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0502700.1

Sequence Viewer

Length: 369 bp
ATGGCTTCTGTTTCAATGGCTATGCCAATTATGTCTGCCACCCAAAACAGAACAAACCAGTCAAGTTCATTGTTGAAGTCTATAATCCCAGTTGGGCAACCAAACAAGGCTGTGTTTGTGAAGCCAAAGTCGTCCACAGACATGCTCAAAGTGCAGGCCTCTTTGAAAGAGAAGGCAGTCACAGGCCTCACAGCAGCTGCATTGACAGCTTCCATGGTGATACCTGAGGTGGCTGAGGCGGCCGGGGCCGGCGTTACCCCATCTCTCAACAACTTTTTGCTTAGCATTGCAGCTGGAGGAGTTGTGCTTGTAGCAATTCTTGGAGCTGTTATTGGTGTCTCCAACTTTGATCCAGTTAAGAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.36

Weight (kDa)

10.0

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbX PF06596 85 - 121 8.5e-17 Photosystem II reaction centre X protein (PsbX)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 240
AgsI TTSAA 3 cut(s) 15, 76, 166
AluBI AGCT 4 cut(s) 197, 209, 293, 326
AluI AGCT 4 cut(s) 197, 209, 293, 326
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 4 cut(s) 156, 184, 240, 246
ApeKI GCWGC 3 cut(s) 194, 197, 290
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 184, 206, 302
BccI CCATC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 343
BisI GCNGC 4 cut(s) 195, 198, 240, 291
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 4 cut(s) 196, 199, 241, 292
Bme1390I CCNGG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 213, 243
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 58, 89, 353
Bse21I CCTNAGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 213, 243
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 216, 225
BseNI ACTGG 3 cut(s) 58, 89, 353
BseRI GAGGAG 1 cut(s) 312
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 184, 206, 302
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 4 cut(s) 158, 186, 242, 248
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 243, 249
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 4 cut(s) 158, 186, 242, 248
Bsp143I GATC 1 cut(s) 349
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 239
BspANI GGCC 4 cut(s) 158, 186, 242, 248
BspCNI CTCAG 2 cut(s) 217, 226
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 58, 89, 353
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 213, 243
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 156, 250
BstDEI CTNAG 3 cut(s) 225, 234, 281
BstDSI CCRYGG 1 cut(s) 213
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 349
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 184, 206, 302
BstZI CGGCCG 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 225
BsuRI GGCC 4 cut(s) 158, 186, 242, 248
BtgI CCRYGG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 156, 250
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 2 cut(s) 142, 214
DdeI CTNAG 3 cut(s) 225, 234, 281
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 2 cut(s) 158, 186
Eco52I CGGCCG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 145, 217
FaiI YATR 5 cut(s) 23, 32, 83, 143, 215
FatI CATG 2 cut(s) 141, 213
Fnu4HI GCNGC 4 cut(s) 195, 198, 240, 291
Fsp4HI GCNGC 4 cut(s) 195, 198, 240, 291
GluI GCNGC 4 cut(s) 195, 198, 240, 291
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 4 cut(s) 158, 186, 242, 248
HapII CCGG 2 cut(s) 243, 249
Hin1II CATG 2 cut(s) 145, 217
HpaII CCGG 2 cut(s) 243, 249
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 154, 200, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
HpyF3I CTNAG 3 cut(s) 225, 234, 281
Hsp92II CATG 2 cut(s) 145, 217
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 8 cut(s) 71, 102, 140, 168, 237, 256, 262, 279
Lsp1109I GCAGC 3 cut(s) 184, 206, 302
MaeIII GTNAC 2 cut(s) 178, 253
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MluCI AATT 2 cut(s) 27, 315
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 5 cut(s) 169, 197, 220, 229, 290
MroNI GCCGGC 1 cut(s) 248
MseI TTAA 2 cut(s) 357, 367
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 197, 293
MspI CCGG 2 cut(s) 243, 249
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 151, 206, 239, 245
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 2 cut(s) 145, 217
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 145
PceI AGGCCT 2 cut(s) 158, 186
PdiI GCCGGC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 196, 199, 241, 292
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 197, 293
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 357, 367
SatI GCNGC 4 cut(s) 195, 198, 240, 291
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 244
SetI ASST 6 cut(s) 199, 211, 226, 231, 295, 328
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 2 cut(s) 27, 315
SseBI AGGCCT 2 cut(s) 158, 186
SsiI CCGC 1 cut(s) 239
StuI AGGCCT 2 cut(s) 158, 186
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 213
TasI AATT 2 cut(s) 27, 315
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 357, 367
Tru9I TTAA 2 cut(s) 357, 367
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 194, 197, 290
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 57
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.