FvH4_6g42520

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000145
Physical Location & Seq
Reverse (-)
33110865 .. 33115816
4952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42520.t1

Sequence Viewer

Length: 2013 bp
ATGAGCAGGACTAGGGTTTTCAATCAGAAACGATCAACAACGTCGACGACGATGATGGAGGACAGCGATTTCGTCGTCGTTGAAGAGCAGCAAGAATTCGATGACATGGATACCACCGACCCTTGGGTGCTGTTGAAAAGCAGCTCTTTCCGAGCGATCTGCGATACAAACCGAGCAAAGTTGACGGAAGCTTGGCTGATGGTCAAATCGTCCTTGGAAGAACTAGGGTGTTCATGCACAATGAGTACGGTTGATTCCACAGTCTCAGTGGTATCAACAGAGCCAGATATCAAGCGTAAAGCTAAATATCTTTTCAAACTTTTGTTCAAGACTCCTGTTTCGGCACCTTTGGCCATTGAGATGGCACTCCATGGCAGGCAACATGACCACATCAAGCTTAAAACTCACAAAGGAGGGCTATGCAAAAAATATGGGATCAAGAAGGAGGAATTTGAGAAAGTGTGGAGACGTCTCAAACGCTCCTTAAAGGAACTTGAAGATTTGACCCACTGTACTCTTTTTCTGAACAAGAGAACTCTTACTGCCGTGGGTCCATCTCCAAGATTACCCTGGGTCAGGAAGGTTTTGAAATTCTCCTTTGTTGAAAAGTTAAGTCCTGGACATGTTATTAGGGTTTTCAACCGGAAGCTGAAACGAACAATGAGGAAAAGTGAGAGTGAGTTTGCCGTCGTTGAGCAGCCAAAACTTGATGACGTTGTCAGCGAGGCTATCCCGATGATGGAGGAAAGCAATTTCGTCATAGTTGAGCAGCCAGAGCTCAATAACAAAGTTAGGGATCCTGTTCAGGCGTCGAACAGTAGGTCTTTCCGTCCGTACAGTACAAACCGAGCAAAGTTGAGGGAAGCTTGGCCGATGATCAAATCGTCCTTAGAAGAACTAGGGTTTTTATGTGCAATGAGTACGGTTGATTGCGAAGTCTCACTGGTATTACCCTGGTCGACAGACAAAGAAATCATGCGCAAGGCCGACTATCTTTTCAAAATTTTGTTGAAGACTTCTGTTCCAGCACCTCTGGCAATAGAGTTGGCACTCCAGGGAAGGCAACATGATCTCATCGAGCTTACTCAAAATCGTGGGATATGCAAAAAGTATGGAATCAATAAAAAGGAGAAAATTGATAAACTAGGGCGACGTCTTAAACGCTCCCTAAGGGAACTTGGTGATCTGACCCAATGTACTCTTTTTCTAAACAAAAATTATCTTACTGTTGTTGGTCCATCTCCAAGATTACGCTGGGTCAGGAGGGTTCTGAAACTCTGCATAACTAAAAAGTTGAGTCCTCGAGATGTTATTAGTGCGTTCATATGTAAGTTTGATCAAAGAGTTGCATTTGTTCGGGATCTTGATGTACCTAATGTTGAGACTACTGCCCATTTGGTGAACAAAGATGGTGCAACTGAAGTGACAGTTCCCTTTCTTGAACGACTAGCAGCAAGGATGGAAGGAGCTTTGCCAATAGTGGAGTCATCTTTAGAGAAATATGGCATTTCTTGCACGTTGAATCTGATTAACCGTACCGTGGCTATCTCAACAACTGAAGCAACCAAAGAGTACCCTGATGCGTTTGAGAAGGCTAAATATCATTTGCAACTTTTGACAGCATCTAATGTCCCGCCATCTCGGGTTATAGATTTAGCACTGAATGGCAAGCAGCATGAATTCATCAAGCTAGGGTTTCAAGAAGATGGACTTTGCTCGCTGTATGGAATAAAGAAGGAACAATATCGTAAACGGCTAAAATGGCTCCTTCGTTCTATGAAGGGGATTAGAAAATTGGCGAGCTGTGGTGCTGTCTACTTCAGAGCTGACTATTCAGTTTCAGGAGACACTATTACTGCTGTGAGTCCATCTTGTGCGGGATTGAATTCATTCAGGAGGGTTGTGTTGGCCTGCATTGTTGAAGATATAGATCCTGCATATCTTATAGAGAAAGAGGCGACACGGAAACTGAAGAAGAGTATCAAACGCAGTATCAAGCGATTGCATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

671

Amino Acids

76.45

Weight (kDa)

9.59

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 472, 1156
Acc16I TGCGCA 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 3 cut(s) 44, 959, 1815
AciI CCGC 2 cut(s) 1634, 1877
AclWI GGATC 5 cut(s) 443, 791, 804, 1368, 1925
AcoI YGGCCR 2 cut(s) 351, 869
AcsI RAATTY 6 cut(s) 95, 449, 590, 1002, 1679, 1885
AcuI CTGAAG 4 cut(s) 1440, 1578, 1804, 1991
AcyI GRCGYC 3 cut(s) 469, 809, 1153
AfaI GTAC 9 cut(s) 247, 514, 836, 841, 922, 1198, 1371, 1537, 1574
AfiI CCNNNNNNNGG 4 cut(s) 123, 576, 739, 1540
AflIII ACRYGT 1 cut(s) 622
AjnI CCWGG 4 cut(s) 569, 616, 953, 1053
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 6 cut(s) 268, 460, 476, 943, 1376, 1839
AlwI GGATC 5 cut(s) 443, 791, 804, 1368, 1925
Ama87I CYCGRG 2 cut(s) 1302, 1641
AoxI GGCC 4 cut(s) 351, 869, 984, 1908
ApeKI GCWGC 6 cut(s) 88, 141, 697, 769, 1451, 1672
ApoI RAATTY 6 cut(s) 95, 449, 590, 1002, 1679, 1885
ArsI GACNNNNNNTTYG 6 cut(s) 53, 85, 322, 354, 806, 838
Asp700I GAANNNNTTC 1 cut(s) 1889
AspLEI GCGC 1 cut(s) 981
AspS9I GGNCC 2 cut(s) 551, 1235
AsuHPI GGTGA 2 cut(s) 1193, 1411
AvaI CYCGRG 2 cut(s) 1302, 1641
AvaII GGWCC 2 cut(s) 551, 1235
AxyI CCTNAGG 1 cut(s) 1169
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 796
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 6 cut(s) 100, 153, 709, 781, 1463, 1684
BceAI ACGGC 3 cut(s) 530, 671, 1769
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 4 cut(s) 571, 618, 955, 1055
BciVI GTATCC 1 cut(s) 103
BclI TGATCA 2 cut(s) 876, 1336
BcoDI GTCTC 6 cut(s) 268, 460, 476, 943, 1376, 1839
BfaI CTAG 6 cut(s) 12, 224, 899, 1145, 1448, 1691
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 6 cut(s) 89, 142, 698, 770, 1452, 1673
BlsI GCNGC 6 cut(s) 90, 143, 699, 771, 1453, 1674
Bme1390I CCNGG 4 cut(s) 571, 618, 955, 1055
Bme18I GGWCC 2 cut(s) 551, 1235
BmeT110I CYCGRG 2 cut(s) 1302, 1641
BmgT120I GGNCC 2 cut(s) 551, 1235
BmiI GGNNCC 4 cut(s) 345, 552, 798, 1766
BmrFI CCNGG 4 cut(s) 571, 618, 955, 1055
BmsI GCATC 2 cut(s) 1570, 1631
BpiI GAAGAC 1 cut(s) 1019
BpmI CTGGAG 1 cut(s) 1037
BsaBI GATNNNNATC 1 cut(s) 1929
BsaHI GRCGYC 3 cut(s) 469, 809, 1153
BsaJI CCNNGG 9 cut(s) 122, 213, 370, 546, 569, 570, 953, 1054, 1539
BsaWI WCCGGW 1 cut(s) 642
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 576, 739, 1540
Bse1I ACTGG 1 cut(s) 948
Bse21I CCTNAGG 1 cut(s) 1169
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 1929
BseBI CCWGG 4 cut(s) 571, 618, 955, 1055
BseDI CCNNGG 9 cut(s) 122, 213, 370, 546, 569, 570, 953, 1054, 1539
BseGI GGATG 1 cut(s) 1464
BseJI GATNNNNATC 1 cut(s) 1929
BseLI CCNNNNNNNGG 4 cut(s) 123, 576, 739, 1540
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 948
BseXI GCAGC 6 cut(s) 100, 153, 709, 781, 1463, 1684
BseYI CCCAGC 1 cut(s) 1254
BshFI GGCC 4 cut(s) 353, 871, 986, 1910
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 780
BsiHKCI CYCGRG 2 cut(s) 1302, 1641
BsiSI CCGG 1 cut(s) 643
BslFI GGGAC 1 cut(s) 1616
BslI CCNNNNNNNGG 4 cut(s) 123, 576, 739, 1540
BsmAI GTCTC 6 cut(s) 268, 460, 476, 943, 1376, 1839
BsmBI CGTCTC 2 cut(s) 460, 476
BsmFI GGGAC 1 cut(s) 1616
BsnI GGCC 4 cut(s) 353, 871, 986, 1910
BsoBI CYCGRG 2 cut(s) 1302, 1641
Bsp1286I GDGCHC 1 cut(s) 780
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 2 cut(s) 1634, 1877
BspANI GGCC 4 cut(s) 353, 871, 986, 1910
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 4 cut(s) 345, 552, 798, 1766
BspPI GGATC 5 cut(s) 443, 791, 804, 1368, 1925
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 9 cut(s) 122, 213, 370, 546, 569, 570, 953, 1054, 1539
BssNI GRCGYC 3 cut(s) 469, 809, 1153
BssT1I CCWWGG 3 cut(s) 122, 213, 370
Bst2UI CCWGG 4 cut(s) 571, 618, 955, 1055
Bst6I CTCTTC 2 cut(s) 78, 1970
BstACI GRCGYC 3 cut(s) 469, 809, 1153
BstAPI GCANNNNNTGC 1 cut(s) 1512
BstC8I GCNNGC 5 cut(s) 377, 1670, 1718, 1801, 1912
BstDEI CTNAG 3 cut(s) 265, 889, 1169
BstDSI CCRYGG 3 cut(s) 370, 546, 1539
BstENI CCTNNNNNAGG 1 cut(s) 574
BstF5I GGATG 1 cut(s) 1464
BstHHI GCGC 1 cut(s) 981
BstMAI GTCTC 6 cut(s) 268, 460, 476, 943, 1376, 1839
BstMWI GCNNNNNNNGC 5 cut(s) 350, 775, 1034, 1512, 1762
BstNI CCWGG 4 cut(s) 571, 618, 955, 1055
BstNSI RCATGY 2 cut(s) 626, 2009
BstSCI CCNGG 4 cut(s) 569, 616, 953, 1053
BstV1I GCAGC 6 cut(s) 100, 153, 709, 781, 1463, 1684
BstV2I GAAGAC 1 cut(s) 1019
BstX2I RGATCY 3 cut(s) 796, 1360, 1930
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 3 cut(s) 796, 1360, 1930
Bsu36I CCTNAGG 1 cut(s) 1169
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 4 cut(s) 353, 871, 986, 1910
BtgI CCRYGG 3 cut(s) 370, 546, 1539
BtsCI GGATG 1 cut(s) 1464
BtsIMutI CAGTG 4 cut(s) 273, 508, 941, 1658
Cac8I GCNNGC 5 cut(s) 377, 1670, 1718, 1801, 1912
CfoI GCGC 1 cut(s) 981
Cfr13I GGNCC 2 cut(s) 551, 1235
CseI GACGC 1 cut(s) 798
Csp6I GTAC 9 cut(s) 246, 513, 835, 840, 921, 1197, 1370, 1536, 1573
CviAII CATG 9 cut(s) 106, 234, 371, 383, 623, 976, 1067, 1676, 2006
CviQI GTAC 9 cut(s) 246, 513, 835, 840, 921, 1197, 1370, 1536, 1573
DdeI CTNAG 3 cut(s) 265, 889, 1169
EaeI YGGCCR 2 cut(s) 351, 869
Eam1104I CTCTTC 2 cut(s) 78, 1970
EarI CTCTTC 2 cut(s) 78, 1970
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 3 cut(s) 122, 213, 370
Eco24I GRGCYC 1 cut(s) 780
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 551, 1235
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 4 cut(s) 1440, 1578, 1804, 1991
Eco81I CCTNAGG 1 cut(s) 1169
Eco88I CYCGRG 2 cut(s) 1302, 1641
EcoICRI GAGCTC 1 cut(s) 778
EcoNI CCTNNNNNAGG 1 cut(s) 574
EcoRI GAATTC 3 cut(s) 95, 1679, 1885
EcoRII CCWGG 4 cut(s) 569, 616, 953, 1053
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 3 cut(s) 122, 213, 370
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 3 cut(s) 122, 213, 370
Esp3I CGTCTC 2 cut(s) 460, 476
FaeI CATG 9 cut(s) 109, 237, 374, 386, 626, 979, 1070, 1679, 2009
FalI AAGNNNNNCTT 4 cut(s) 130, 162, 1695, 1727
FaqI GGGAC 1 cut(s) 1616
FatI CATG 9 cut(s) 105, 233, 370, 382, 622, 975, 1066, 1675, 2005
FauI CCCGC 2 cut(s) 1641, 1870
FauNDI CATATG 1 cut(s) 1325
FbaI TGATCA 2 cut(s) 876, 1336
FblI GTMKAC 3 cut(s) 44, 959, 1815
Fnu4HI GCNGC 6 cut(s) 89, 142, 698, 770, 1452, 1673
FokI GGATG 1 cut(s) 1471
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 6 cut(s) 89, 142, 698, 770, 1452, 1673
FspBI CTAG 6 cut(s) 12, 224, 899, 1145, 1448, 1691
FspI TGCGCA 1 cut(s) 980
GlaI GCGC 1 cut(s) 980
GluI GCNGC 6 cut(s) 89, 142, 698, 770, 1452, 1673
GsaI CCCAGC 1 cut(s) 1258
GsuI CTGGAG 1 cut(s) 1037
HaeIII GGCC 4 cut(s) 353, 871, 986, 1910
HapII CCGG 1 cut(s) 643
HgaI GACGC 1 cut(s) 798
HhaI GCGC 1 cut(s) 981
Hin1I GRCGYC 3 cut(s) 469, 809, 1153
Hin1II CATG 9 cut(s) 109, 237, 374, 386, 626, 979, 1070, 1679, 2009
Hin6I GCGC 1 cut(s) 979
HinP1I GCGC 1 cut(s) 979
HincII GTYRAC 3 cut(s) 45, 183, 960
HindII GTYRAC 3 cut(s) 45, 183, 960
HindIII AAGCTT 3 cut(s) 189, 395, 864
HinfI GANTC 7 cut(s) 254, 331, 1116, 1297, 1484, 1522, 1864
HpaII CCGG 1 cut(s) 643
HphI GGTGA 2 cut(s) 1193, 1411
Hpy166II GTNNAC 6 cut(s) 45, 183, 960, 1402, 1751, 1816
Hpy188I TCNGA 8 cut(s) 27, 152, 525, 1188, 1272, 1527, 1823, 2012
Hpy8I GTNNAC 6 cut(s) 45, 183, 960, 1402, 1751, 1816
Hpy99I CGWCG 8 cut(s) 46, 49, 52, 77, 80, 692, 814, 1155
HpyAV CCTTC 8 cut(s) 436, 574, 1053, 1457, 1585, 1729, 1774, 1778
HpyCH4IV ACGT 5 cut(s) 41, 469, 714, 1153, 1517
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 775, 1034, 1512, 1762
HpyF3I CTNAG 3 cut(s) 265, 889, 1169
HpySE526I ACGT 5 cut(s) 41, 469, 714, 1153, 1517
Hsp92I GRCGYC 3 cut(s) 469, 809, 1153
Hsp92II CATG 9 cut(s) 109, 237, 374, 386, 626, 979, 1070, 1679, 2009
HspAI GCGC 1 cut(s) 979
Ksp22I TGATCA 2 cut(s) 876, 1336
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 4 cut(s) 485, 1169, 1466, 1770
Lsp1109I GCAGC 6 cut(s) 100, 153, 709, 781, 1463, 1684
LweI GCATC 2 cut(s) 1570, 1631
MaeI CTAG 6 cut(s) 12, 224, 899, 1145, 1448, 1691
MaeII ACGT 5 cut(s) 41, 469, 714, 1153, 1517
MaeIII GTNAC 1 cut(s) 1423
MboII GAAGA 9 cut(s) 95, 230, 509, 905, 1024, 1715, 1934, 1984, 1987
MflI RGATCY 3 cut(s) 796, 1360, 1930
MhlI GDGCHC 1 cut(s) 780
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 4 cut(s) 325, 1306, 1493, 1873
Mox20I TGGCCA 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 1889
MscI TGGCCA 1 cut(s) 353
MseI TTAA 5 cut(s) 399, 485, 611, 1158, 1530
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 1 cut(s) 643
MspR9I CCNGG 4 cut(s) 571, 618, 955, 1055
MvaI CCWGG 4 cut(s) 571, 618, 955, 1055
MwoI GCNNNNNNNGC 5 cut(s) 350, 775, 1034, 1512, 1762
NcoI CCATGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 1325
NlaIII CATG 9 cut(s) 109, 237, 374, 386, 626, 979, 1070, 1679, 2009
NlaIV GGNNCC 4 cut(s) 345, 552, 798, 1766
NmuCI GTSAC 1 cut(s) 1423
NsbI TGCGCA 1 cut(s) 980
NspI RCATGY 2 cut(s) 626, 2009
PaeR7I CTCGAG 1 cut(s) 1302
PasI CCCWGGG 1 cut(s) 570
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 720
PdmI GAANNNNTTC 1 cut(s) 1889
PfeI GAWTC 3 cut(s) 254, 1116, 1522
PflFI GACNNNGTC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 6 cut(s) 90, 143, 699, 771, 1453, 1674
PleI GAGTC 4 cut(s) 325, 1305, 1492, 1872
PpsI GAGTC 4 cut(s) 325, 1305, 1492, 1872
PscI ACATGT 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 4 cut(s) 569, 616, 953, 1053
PspFI CCCAGC 1 cut(s) 1254
PspGI CCWGG 4 cut(s) 569, 616, 953, 1053
PspN4I GGNNCC 4 cut(s) 345, 552, 798, 1766
PspPI GGNCC 2 cut(s) 551, 1235
PsuI RGATCY 3 cut(s) 796, 1360, 1930
PsyI GACNNNGTC 1 cut(s) 716
RsaI GTAC 9 cut(s) 247, 514, 836, 841, 922, 1198, 1371, 1537, 1574
RsaNI GTAC 9 cut(s) 246, 513, 835, 840, 921, 1197, 1370, 1536, 1573
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 780
SalI GTCGAC 2 cut(s) 43, 958
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 5 cut(s) 399, 485, 611, 1158, 1530
SatI GCNGC 6 cut(s) 89, 142, 698, 770, 1452, 1673
Sau96I GGNCC 2 cut(s) 551, 1235
SchI GAGTC 4 cut(s) 325, 1306, 1493, 1873
ScrFI CCNGG 4 cut(s) 571, 618, 955, 1055
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 2 cut(s) 1570, 1631
Sfr274I CTCGAG 1 cut(s) 1302
SgrDI CGTCGACG 1 cut(s) 43
SinI GGWCC 2 cut(s) 551, 1235
SlaI CTCGAG 1 cut(s) 1302
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 1302
SmoI CTYRAG 1 cut(s) 1302
SsiI CCGC 2 cut(s) 1634, 1877
SspMI CTAG 6 cut(s) 12, 224, 899, 1145, 1448, 1691
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 4 cut(s) 569, 616, 953, 1053
StyI CCWWGG 3 cut(s) 122, 213, 370
TaiI ACGT 5 cut(s) 44, 472, 717, 1156, 1520
TaqI TCGA 6 cut(s) 44, 99, 812, 959, 1077, 1303
TatI WGTACW 3 cut(s) 512, 839, 1196
TfiI GAWTC 3 cut(s) 254, 1116, 1522
Tru1I TTAA 5 cut(s) 399, 485, 611, 1158, 1530
Tru9I TTAA 5 cut(s) 399, 485, 611, 1158, 1530
TscAI CASTG 4 cut(s) 273, 515, 948, 1665
TseFI GTSAC 1 cut(s) 1423
TseI GCWGC 6 cut(s) 88, 141, 697, 769, 1451, 1672
Tsp45I GTSAC 1 cut(s) 1423
TspDTI ATGAA 6 cut(s) 222, 1312, 1672, 1692, 1793, 1878
TspGWI ACGGA 4 cut(s) 200, 818, 822, 1978
TspRI CASTG 4 cut(s) 273, 515, 948, 1665
Tth111I GACNNNGTC 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 551, 1235
XagI CCTNNNNNAGG 1 cut(s) 574
XapI RAATTY 6 cut(s) 95, 449, 590, 1002, 1679, 1885
XceI RCATGY 2 cut(s) 626, 2009
XcmI CCANNNNNNNNNTGG 3 cut(s) 265, 567, 1251
XhoI CTCGAG 1 cut(s) 1302
XmiI GTMKAC 3 cut(s) 44, 959, 1815
XmnI GAANNNNTTC 1 cut(s) 1889
XspI CTAG 6 cut(s) 12, 224, 899, 1145, 1448, 1691
ZraI GACGTC 2 cut(s) 470, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.