RLG00000032067

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000145
Physical Location & Seq
Reverse (-)
10591480 .. 10592135
656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032067

Sequence Viewer

Length: 366 bp
ATGGAGAACAGCAACTCAAAAGCGGACCAAATCGAGGTGGAGGTGTCTCAGTTCGAGAATGACTTTGATGTCGTCTCTTACACCCAAGTTCTACGACGAATTTCTCAACGTGGATTTGCTGCAAGAAGGTTGGCCAAAAGTAGAATCTTCTTTAAAAGAATATGGCGTCTTATGCACCCTGGATCTGGGGAAACACCATTCCAAGGAATAAATATAGTAAGAAGGATTGTGGAAGACTGCATTGCTCATGATGTGCCTCCTCTACCCCGGGTGCGATTGATGAAAAAGAAGACTCAAAAGGAGAAGGATGAGATGAATAAAGTGACAAGTGAATTGATGATAATTCTCGAGGGTATGCGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.16

Weight (kDa)

9.83

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AciI CCGC 2 cut(s) 23, 358
AclWI GGATC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 34, 185, 203
AjnI CCWGG 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 51, 79
AlwI GGATC 1 cut(s) 190
Ama87I CYCGRG 2 cut(s) 267, 347
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 268, 269
AvaI CYCGRG 2 cut(s) 267, 347
AvaII GGWCC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 240, 296
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 2 cut(s) 268, 269
BcoDI GTCTC 2 cut(s) 51, 79
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 3 cut(s) 180, 268, 269
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 2 cut(s) 267, 347
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 3 cut(s) 180, 268, 269
BpiI GAAGAC 2 cut(s) 240, 296
BpuMI CCSGG 2 cut(s) 268, 269
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 178, 202, 266, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 185, 203
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 178, 202, 266, 267
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 34, 185, 203
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 2 cut(s) 267, 347
BsiSI CCGG 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 34, 185, 203
BsmAI GTCTC 2 cut(s) 51, 79
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 267, 347
Bsp143I GATC 1 cut(s) 182
BspACI CCGC 2 cut(s) 23, 358
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 4 cut(s) 178, 202, 266, 267
BssMI GATC 1 cut(s) 182
BssNI GRCGYC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 2 cut(s) 51, 79
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 3 cut(s) 178, 266, 267
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 240, 296
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 313
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 25
Cfr9I CCCGGG 1 cut(s) 267
CseI GACGC 1 cut(s) 155
CviAII CATG 1 cut(s) 248
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
DraI TTTAAA 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 25
Eco88I CYCGRG 2 cut(s) 267, 347
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 1 cut(s) 251
FaiI YATR 5 cut(s) 163, 173, 215, 249, 356
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 1 cut(s) 251
HinfI GANTC 2 cut(s) 144, 292
HpaII CCGG 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 3 cut(s) 55, 248, 347
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 3 cut(s) 120, 216, 298
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 122, 175, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 182
LpnPI CCDG 4 cut(s) 165, 171, 192, 281
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 322
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 3 cut(s) 139, 245, 301
MflI RGATCY 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 3 cut(s) 99, 332, 342
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 5 cut(s) 28, 34, 267, 270, 343
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 3 cut(s) 180, 268, 269
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 2 cut(s) 268, 269
NdeII GATC 1 cut(s) 182
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 347
PagI TCATGA 1 cut(s) 247
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 182
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 3 cut(s) 180, 268, 269
SetI ASST 4 cut(s) 39, 45, 112, 131
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 99, 332, 342
SsiI CCGC 2 cut(s) 23, 358
StyD4I CCNGG 3 cut(s) 178, 266, 267
StyI CCWWGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 33, 54, 348
TasI AATT 3 cut(s) 99, 332, 342
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 296, 329
TspMI CCCGGG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 347
XmaI CCCGGG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.