Rroxscaffold_2G00151410

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000145
Physical Location & Seq
Forward (+)
88657864 .. 88659141
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151410.1

Sequence Viewer

Length: 1278 bp
ATGGAGAACATCGAGTCCATGGAGATGGATAAGTCCGGCCCTTCTTCTTCGAACGACGAGACCTCTTTCTCTGCGTTCTTCTCTGAAAAACGACAACTAAAGTTGCAAGACGTCTGGCCGGAGCTGGAGTCGTCTTTAGATGCCTATGGCATTTCATGCGCAATTAATCTTCCCCAGCGCTCAGTAACAATCTCAAGGACCCCAACGACCAAGGGTCGAAACTTTTACGACAAGGCCAAGAGTGTCGTCGAGCTTCTTGCAACAACTCAAGTGCCACCGCATCTGGCACTGGAAGTATTGAACGGAAATTGGAGATTTCATACTCTAATTAAGACTGGGAATCAAGAAGGTGGGTTCTGCTCCAAGTTCGGCATCAGCCCGGACCAGTTTGCTAAACGAAGGGACTGGCTTGCCGGATCCCTAGAGGCAATTTCGGCACTGACGCTTTGTCATCTTTATGTTAATGAAAACACTGCTGCTGCGGTGGGTTCGGCTGCTTCGGTATTAGAGTTTAGGAGGATTGTGGAAAACTGCATTGTTAGTGATGTGAATCCAGCAGAGTCTAACAACAAGATTAAAAAGTTTTTGAGTTATAAAAAGAACGTGCTGCAGAAACGTGGGGTGGATTACACGGCAGTATTGGAGAAGTCTGGCTGCAGTGAAGTGACATCTTTTGGTGCGTACGTCGCTAAAGGTCTTAGTAGGAATAAAGAGGTGGACCAAGCCTGGCCTTTTGTGGAGTCGTTTTTAGAACATTATGGCATTTCATGCACATTGCATAGGGTTCTTCGTTCCATGACATTTTCGACTACCAGAGTAACCAAGGATCCAGATGTTATGGACAGTGTTGGTGCTCTTCTTGAAGTTTTGGGAAGTACTAGTGTTCCGGGGTCGAAGGTGATACAGATATTGGACGGCCGGCTGCAGTATGAATTTATCAACACCGGGTTTGAAAAGGGTGGGCTCTGCTCGAAATTTGATGGCATCAACAAGGAGCTTGCTAAGAACAAGCAAAGATTGAAGCGCAACGCAAAGAACCTTGGAGACTTGCTGGTGTGTGATGTGTATATTGACAGAAGCGGTGTTGTTGTAGTGGGGAGTTGTGCGGCAGGGTTGAAGGAAATGAGGTCAATTGTGGAACGATGTCTGGTTAAAAATGAAGACCCTGCAACAGCGGTGAGGAGGCTAAGATCGTGTAATAAGAAGCAGGGTAGTTTGAGATTATCTGATGAGAAGCAGGTCAGTTTGATGAAGAAGCTTGAGGGTCTGTGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

46.98

Weight (kDa)

8.86

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 128 - 196 3.4e-09 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AatII GACGTC 1 cut(s) 114
Acc16I TGCGCA 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 1228
AciI CCGC 5 cut(s) 278, 482, 1080, 1106, 1175
AclWI GGATC 4 cut(s) 411, 424, 821, 834
AcoI YGGCCR 2 cut(s) 116, 916
AcsI RAATTY 2 cut(s) 932, 974
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 683, 877
AfeI AGCGCT 1 cut(s) 179
AgsI TTSAA 5 cut(s) 301, 863, 953, 1021, 1117
AhdI GACNNNNNGTC 2 cut(s) 213, 447
AhlI ACTAGT 1 cut(s) 878
AjnI CCWGG 1 cut(s) 725
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 4 cut(s) 124, 253, 997, 1258
AluI AGCT 4 cut(s) 124, 253, 997, 1258
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 2 cut(s) 53, 1038
AlwI GGATC 4 cut(s) 411, 424, 821, 834
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 5 cut(s) 37, 116, 234, 728, 916
ApeKI GCWGC 6 cut(s) 476, 479, 494, 607, 654, 922
ApoI RAATTY 2 cut(s) 932, 974
AseI ATTAAT 1 cut(s) 165
AspLEI GCGC 3 cut(s) 161, 180, 1026
AspS9I GGNCC 4 cut(s) 38, 198, 382, 718
AsuC2I CCSGG 3 cut(s) 380, 888, 946
AsuHPI GGTGA 2 cut(s) 910, 1189
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 3 cut(s) 198, 382, 718
BamHI GGATCC 2 cut(s) 416, 826
BanII GRGCYC 1 cut(s) 966
BbsI GAAGAC 1 cut(s) 1167
Bbv12I GWGCWC 1 cut(s) 856
BbvI GCAGC 6 cut(s) 463, 466, 481, 594, 641, 909
BccI CCATC 2 cut(s) 19, 974
BceAI ACGGC 2 cut(s) 648, 931
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 727
BcnI CCSGG 3 cut(s) 380, 888, 946
BcoDI GTCTC 2 cut(s) 53, 1038
BcuI ACTAGT 1 cut(s) 878
BfaI CTAG 2 cut(s) 422, 879
BfmI CTRYAG 3 cut(s) 608, 655, 923
BfoI RGCGCY 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 1228
BisI GCNGC 7 cut(s) 477, 480, 495, 608, 655, 923, 1107
BlsI GCNGC 7 cut(s) 478, 481, 496, 609, 656, 924, 1108
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 380, 727, 888, 946
Bme18I GGWCC 3 cut(s) 198, 382, 718
BmeRI GACNNNNNGTC 2 cut(s) 213, 447
BmgT120I GGNCC 4 cut(s) 38, 198, 382, 718
BmiI GGNNCC 3 cut(s) 200, 418, 828
BmrFI CCNGG 4 cut(s) 380, 727, 888, 946
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 130, 289, 381, 993
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 1167
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 178, 252
BpuMI CCSGG 3 cut(s) 380, 888, 946
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 5 cut(s) 18, 210, 822, 887, 1039
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bse118I RCCGGY 1 cut(s) 918
Bse1I ACTGG 4 cut(s) 294, 340, 385, 410
Bse3DI GCAATG 1 cut(s) 773
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 5 cut(s) 18, 210, 822, 887, 1039
BseJI GATNNNNATC 1 cut(s) 549
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 4 cut(s) 294, 340, 385, 410
BseRI GAGGAG 1 cut(s) 1195
BseX3I CGGCCG 1 cut(s) 916
BseXI GCAGC 6 cut(s) 463, 466, 481, 594, 641, 909
BseYI CCCAGC 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 5 cut(s) 39, 118, 236, 730, 918
BsiEI CGRYCG 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 856
BsiSI CCGG 7 cut(s) 36, 119, 380, 414, 887, 919, 945
BsiWI CGTACG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 53, 1038
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 5 cut(s) 39, 118, 236, 730, 918
Bso31I GGTCTC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 856, 966
Bsp143I GATC 3 cut(s) 416, 826, 1190
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 5 cut(s) 278, 482, 1080, 1106, 1175
BspANI GGCC 5 cut(s) 39, 118, 236, 730, 918
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 200, 418, 828
BspMAI CTGCAG 3 cut(s) 612, 659, 927
BspMI ACCTGC 1 cut(s) 1228
BspPI GGATC 4 cut(s) 411, 424, 821, 834
BspQI GCTCTTC 1 cut(s) 861
BspT104I TTCGAA 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 1 cut(s) 918
BsrI ACTGG 4 cut(s) 294, 340, 385, 410
BssAI RCCGGY 1 cut(s) 918
BssECI CCNNGG 5 cut(s) 18, 210, 822, 887, 1039
BssMI GATC 3 cut(s) 416, 826, 1190
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 4 cut(s) 18, 210, 822, 1039
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 1 cut(s) 845
Bst6I CTCTTC 1 cut(s) 861
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 2 cut(s) 156, 768
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 411, 920, 999
BstDEI CTNAG 4 cut(s) 181, 698, 1002, 1187
BstDSI CCRYGG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 3 cut(s) 161, 180, 1026
BstKTI GATC 3 cut(s) 419, 829, 1193
BstMAI GTCTC 2 cut(s) 53, 1038
BstMBI GATC 3 cut(s) 416, 826, 1190
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 4 cut(s) 156, 434, 686, 768
BstNI CCWGG 1 cut(s) 727
BstSCI CCNGG 4 cut(s) 378, 725, 886, 944
BstSFI CTRYAG 3 cut(s) 608, 655, 923
BstV1I GCAGC 6 cut(s) 463, 466, 481, 594, 641, 909
BstV2I GAAGAC 1 cut(s) 1167
BstX2I RGATCY 2 cut(s) 416, 826
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 2 cut(s) 416, 826
BstZI CGGCCG 1 cut(s) 916
BsuRI GGCC 5 cut(s) 39, 118, 236, 730, 918
BtgI CCRYGG 1 cut(s) 18
BtsI GCAGTG 2 cut(s) 471, 664
BtsIMutI CAGTG 5 cut(s) 287, 437, 471, 664, 850
BveI ACCTGC 1 cut(s) 1228
Cac8I GCNNGC 3 cut(s) 411, 920, 999
CfoI GCGC 3 cut(s) 161, 180, 1026
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 4 cut(s) 38, 198, 382, 718
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 682, 876
CviAII CATG 4 cut(s) 19, 156, 768, 796
CviQI GTAC 2 cut(s) 682, 876
DdeI CTNAG 4 cut(s) 181, 698, 1002, 1187
DpnI GATC 3 cut(s) 418, 828, 1192
DpnII GATC 3 cut(s) 416, 826, 1190
DriI GACNNNNNGTC 2 cut(s) 213, 447
EaeI YGGCCR 2 cut(s) 116, 916
EagI CGGCCG 1 cut(s) 916
Eam1104I CTCTTC 1 cut(s) 861
Eam1105I GACNNNNNGTC 2 cut(s) 213, 447
EarI CTCTTC 1 cut(s) 861
EclXI CGGCCG 1 cut(s) 916
Eco130I CCWWGG 4 cut(s) 18, 210, 822, 1039
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 3 cut(s) 198, 382, 718
Eco47III AGCGCT 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 916
EcoO109I RGGNCCY 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 4 cut(s) 18, 210, 822, 1039
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 4 cut(s) 18, 210, 822, 1039
FaeI CATG 4 cut(s) 22, 159, 771, 799
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 18, 155, 767, 795
Fnu4HI GCNGC 7 cut(s) 477, 480, 495, 608, 655, 923, 1107
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 7 cut(s) 477, 480, 495, 608, 655, 923, 1107
FspBI CTAG 2 cut(s) 422, 879
FspI TGCGCA 1 cut(s) 160
GlaI GCGC 3 cut(s) 160, 179, 1025
GluI GCNGC 7 cut(s) 477, 480, 495, 608, 655, 923, 1107
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 5 cut(s) 39, 118, 236, 730, 918
HapII CCGG 7 cut(s) 36, 119, 380, 414, 887, 919, 945
HgaI GACGC 1 cut(s) 451
HhaI GCGC 3 cut(s) 161, 180, 1026
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 4 cut(s) 22, 159, 771, 799
Hin6I GCGC 3 cut(s) 159, 178, 1024
HinP1I GCGC 3 cut(s) 159, 178, 1024
HindIII AAGCTT 1 cut(s) 1256
HinfI GANTC 6 cut(s) 14, 128, 340, 550, 560, 740
HpaII CCGG 7 cut(s) 36, 119, 380, 414, 887, 919, 945
HphI GGTGA 2 cut(s) 910, 1189
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 2 cut(s) 85, 1228
Hpy188III TCNNGA 3 cut(s) 344, 830, 860
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 3 cut(s) 59, 251, 689
HpyAV CCTTC 5 cut(s) 51, 341, 393, 889, 1111
HpyCH4III ACNGT 1 cut(s) 845
HpyCH4IV ACGT 4 cut(s) 111, 603, 616, 684
HpyCH4V TGCA 9 cut(s) 106, 260, 534, 610, 657, 771, 778, 925, 1169
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 434, 686, 768
HpyF3I CTNAG 4 cut(s) 181, 698, 1002, 1187
HpySE526I ACGT 4 cut(s) 111, 603, 616, 684
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 4 cut(s) 22, 159, 771, 799
HspAI GCGC 3 cut(s) 159, 178, 1024
KroI GCCGGC 1 cut(s) 918
KroNI GCCGGC 1 cut(s) 920
Kzo9I GATC 3 cut(s) 416, 826, 1190
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 3 cut(s) 121, 365, 994
Lsp1109I GCAGC 6 cut(s) 463, 466, 481, 594, 641, 909
LweI GCATC 4 cut(s) 130, 289, 381, 993
MaeI CTAG 2 cut(s) 422, 879
MaeII ACGT 4 cut(s) 111, 603, 616, 684
MaeIII GTNAC 3 cut(s) 184, 664, 817
MalI GATC 3 cut(s) 418, 828, 1192
MboI GATC 3 cut(s) 416, 826, 1190
MboII GAAGA 8 cut(s) 36, 39, 70, 161, 779, 848, 1172, 1264
MfeI CAATTG 1 cut(s) 1131
MflI RGATCY 2 cut(s) 416, 826
MhlI GDGCHC 2 cut(s) 856, 966
MluCI AATT 7 cut(s) 162, 307, 327, 429, 932, 974, 1131
MlyI GAGTC 4 cut(s) 23, 137, 569, 749
MnlI CCTC 8 cut(s) 73, 418, 510, 706, 1119, 1173, 1176, 1255
MroNI GCCGGC 1 cut(s) 918
MseI TTAA 5 cut(s) 165, 330, 462, 576, 1152
MslI CAYNNNNRTG 2 cut(s) 23, 456
MspA1I CMGCKG 1 cut(s) 1175
MspI CCGG 7 cut(s) 36, 119, 380, 414, 887, 919, 945
MspR9I CCNGG 4 cut(s) 380, 727, 888, 946
MunI CAATTG 1 cut(s) 1131
MvaI CCWGG 1 cut(s) 727
MwoI GCNNNNNNNGC 4 cut(s) 156, 434, 686, 768
NaeI GCCGGC 1 cut(s) 920
NciI CCSGG 3 cut(s) 380, 888, 946
NcoI CCATGG 1 cut(s) 18
NdeII GATC 3 cut(s) 416, 826, 1190
NgoMIV GCCGGC 1 cut(s) 918
NlaIII CATG 4 cut(s) 22, 159, 771, 799
NlaIV GGNNCC 3 cut(s) 200, 418, 828
NmuCI GTSAC 1 cut(s) 664
NsbI TGCGCA 1 cut(s) 160
NspV TTCGAA 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 861
PdiI GCCGGC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 340, 550
Pfl23II CGTACG 1 cut(s) 681
PkrI GCNGC 7 cut(s) 478, 481, 496, 609, 656, 924, 1108
PleI GAGTC 4 cut(s) 22, 136, 568, 748
PpsI GAGTC 4 cut(s) 22, 136, 568, 748
PpuMI RGGWCCY 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 725
PspLI CGTACG 1 cut(s) 681
PspN4I GGNNCC 3 cut(s) 200, 418, 828
PspPI GGNCC 4 cut(s) 38, 198, 382, 718
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 3 cut(s) 612, 659, 927
PsuI RGATCY 2 cut(s) 416, 826
RsaI GTAC 2 cut(s) 683, 877
RsaNI GTAC 2 cut(s) 682, 876
RseI CAYNNNNRTG 2 cut(s) 23, 456
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 5 cut(s) 165, 330, 462, 576, 1152
SatI GCNGC 7 cut(s) 477, 480, 495, 608, 655, 923, 1107
Sau3AI GATC 3 cut(s) 416, 826, 1190
Sau96I GGNCC 4 cut(s) 38, 198, 382, 718
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 4 cut(s) 23, 137, 569, 749
ScrFI CCNGG 4 cut(s) 380, 727, 888, 946
SduI GDGCHC 2 cut(s) 856, 966
SfaNI GCATC 4 cut(s) 130, 289, 381, 993
SfcI CTRYAG 3 cut(s) 608, 655, 923
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 3 cut(s) 198, 382, 718
SmiMI CAYNNNNRTG 2 cut(s) 23, 456
SmlI CTYRAG 3 cut(s) 193, 267, 1259
SmoI CTYRAG 3 cut(s) 193, 267, 1259
SpeI ACTAGT 1 cut(s) 878
Sse9I AATT 7 cut(s) 162, 307, 327, 429, 932, 974, 1131
SsiI CCGC 5 cut(s) 278, 482, 1080, 1106, 1175
SspMI CTAG 2 cut(s) 422, 879
StyD4I CCNGG 4 cut(s) 378, 725, 886, 944
StyI CCWWGG 4 cut(s) 18, 210, 822, 1039
TaaI ACNGT 1 cut(s) 845
TaiI ACGT 4 cut(s) 114, 606, 619, 687
TaqI TCGA 7 cut(s) 12, 50, 217, 249, 806, 893, 971
TasI AATT 7 cut(s) 162, 307, 327, 429, 932, 974, 1131
TatI WGTACW 1 cut(s) 875
TauI GCSGC 1 cut(s) 1109
TfiI GAWTC 2 cut(s) 340, 550
Tru1I TTAA 5 cut(s) 165, 330, 462, 576, 1152
Tru9I TTAA 5 cut(s) 165, 330, 462, 576, 1152
TscAI CASTG 5 cut(s) 294, 444, 478, 664, 850
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 6 cut(s) 476, 479, 494, 607, 654, 922
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 7 cut(s) 144, 308, 480, 756, 945, 1173, 1265
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 5 cut(s) 294, 444, 478, 664, 850
VpaK11BI GGWCC 3 cut(s) 198, 382, 718
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 2 cut(s) 932, 974
XspI CTAG 2 cut(s) 422, 879
ZraI GACGTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.