RLG00000003683

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000145
Physical Location & Seq
Reverse (-)
51609021 .. 51609479
459 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003683

Sequence Viewer

Length: 459 bp
ATGAATCCGGAAACTTGCATTGGTGAGATAAGAAAACTCTTTTTGGAGAAGGGAAAACTGATTTGGGACCCAAACGTCAATCGCATGGGAATGGATGAGAAGCGTGGCCCTTGCTTGGATTCATATGGCATGCTTGAAGTAACCTCTTACCTTTTGCCTATCTCAACAGGCGGAGAAACTGAGGTGCAGGAAGCTTGGCCGTTTGTGCAGTGGTTTTTACATGAGCATGGCATTTCATGCACATTGAACACGGCTGGGCGTCGCTTGACAATTTCAACCACCAGAAAGACAATGAATCCAGATATTATAGACAAGGTTGGGGTTGTTCTTGAACTTGTGGCAAGTAATCGAACTAGTATTCCAGCAACCAAGGCAGTAGAAATACTAAATAGTCGTGTGCAACATGAAGTCATCAAGACTGGGTTTCACAATGGTGGGATTTGTGCAAAATTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

6.9

Isoelectric Point (pI)

24.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 62 - 130 3.6e-07 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08420
fragaria_vesca FvH4_1g11160 FvH4_2g08143 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36450 FvH4_3g36460 FvH4_3g36460 FvH4_3g45301 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_4g27690 FvH4_5g09160 FvH4_5g09161 FvH4_5g09380 FvH4_5g22900 FvH4_6g42520 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550 FvH4_6g42550
malus_domestica MD02G1015700.v1.1 MD02G1058900.v1.1 MD02G1059000.v1.1 MD03G1170900.v1.1 MD04G1231500.v1.1 MD13G1044300.v1.1 MD16G1045100.v1.1
prunus_persica Prupe.1G308200_v2.0.a1 Prupe.2G125300_v2.0.a1 Prupe.6G307800_v2.0.a1 Prupe.6G351700_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1 Prupe.6G351800_v2.0.a1
pyrus_communis pycom02g01420 pycom02g04810 pycom03g12790 pycom03g12800 pycom12g17840 pycom12g17850 pycom12g17860 pycom13g03890 pycom16g03970
rosa_chinensis RchiOBHm_Chr2g0090081 RchiOBHm_Chr3g0469061 RchiOBHm_Chr3g0469081 RchiOBHm_Chr4g0435531 RchiOBHm_Chr5g0014021 RchiOBHm_Chr5g0014031 RchiOBHm_Chr5g0014041 RchiOBHm_Chr7g0190151 RchiOBHm_Chr7g0190161 RchiOBHm_Chr7g0190171 RchiOBHm_Chr7g0210441
rosa_laevigata RLG00000003683 RLG00000003687 RLG00000003688 RLG00000004561 RLG00000004643 RLG00000016083 RLG00000021085 RLG00000024381 RLG00000032065 RLG00000032067 RLG00000032071 RLG00000032072 RLG00000032075
rosa_multiflora Rmu_co8284349.1_g000001 Rmu_co8324735.1_g000001 Rmu_co8355915.1_g000001 Rmu_co8388905.1_g000001 Rmu_sc0000302.1_g000041 Rmu_sc0000302.1_g000050 Rmu_sc0001940.1_g000034 Rmu_sc0003807.1_g000011 Rmu_sc0005803.1_g000001 Rmu_sc0005803.1_g000007 Rmu_sc0007139.1_g000007 Rmu_sc0007767.1_g000001 Rmu_sc0007767.1_g000003 Rmu_sc0007767.1_g000006 Rmu_sc0007933.1_g000005 Rmu_sc0008587.1_g000004 Rmu_sc0008968.1_g000004 Rmu_sc0018491.1_g000002 Rmu_sc0022420.1_g000001 Rmu_sc0027700.1_g000001 Rmu_sc0036218.1_g000001
rosa_roxburghii Rroxscaffold_1G00062590 Rroxscaffold_1G00062600 Rroxscaffold_1G00062620 Rroxscaffold_1G00062630 Rroxscaffold_1G00062640 Rroxscaffold_1G00062670 Rroxscaffold_1G00062680 Rroxscaffold_2G00091430 Rroxscaffold_2G00151410 Rroxscaffold_3G00245340 Rroxscaffold_3G00255390 Rroxscaffold_3G00264820 Rroxscaffold_3G00264830 Rroxscaffold_3G00265870 Rroxscaffold_5G00355140 Rroxscaffold_5G00376760 Rroxscaffold_6G00412230
rosa_rugosa Rorug02G0005200 Rorug02G0468300 Rorug02G0468300 Rorug02G0532400 Rorug03G0098900 Rorug03G0099000 Rorug03G0099400 Rorug04G0286000 Rorug05G0014400 Rorug05G0014500 Rorug05G0014600 Rorug05G0014600 Rorug05G0014600 Rorug05G0014800 Rorug05G0014900 Rorug05G0015000 Rorug05G0015100 Rorug05G0015100 Rorug05G0441300 Rorug06G0495300 Rorug06G0502600 Rorug06G0502700 Rorug07G0062300
rosa_samantha Rh2AG050900 Rh2BG049600 Rh2CG051800 Rh2CG234600 Rh2DG051100 Rh3BG171300 Rh3BG171800 Rh3CG336700 Rh3DG203600 Rh3DG203800 Rh4AG341600 Rh4AG341700 Rh4BG349900 Rh4CG364600 Rh4DG344200 Rh5AG108800 Rh5AG108900 Rh5AG109000 Rh5AG109100 Rh5BG105500 Rh5CG117300 Rh5CG117500 Rh5CG117600 Rh5DG104200 Rh5DG104400 Rh5DG104500 Rh5DG104600 Rh7BG102300 Rh7BG110600 Rh7BG110700 Rh7BG118900 Rh7CG103600 Rh7CG112800 Rh7CG113000 Rh7CG200300 Rh7CG271100 Rh7DG111300 Rh7DG111400 Rh7DG194400 Rh7DG261800 Rh7DG261900
rosa_wichuraiana Rw0G014550 Rw0G014580 Rw2G004580 Rw3G013980 Rw3G013990 Rw3G014000 Rw3G014020 Rw4G029810 Rw5G009500 Rw5G009510 Rw5G009520 Rw5G009530 Rw7G008640 Rw7G009350 Rw7G021680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 137, 247, 276, 332
AhlI ACTAGT 1 cut(s) 353
AjuI GAANNNNNNNTTGG 3 cut(s) 35, 46, 78
AleI CACNNNNGTG 1 cut(s) 432
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 106, 197
AspS9I GGNCC 2 cut(s) 67, 107
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 67
BceAI ACGGC 2 cut(s) 184, 267
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 67, 107
BmiI GGNNCC 2 cut(s) 68, 69
BmrI ACTGGG 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 2 cut(s) 206, 227
BshFI GGCC 2 cut(s) 108, 199
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 108, 199
Bsp13I TCCGGA 1 cut(s) 7
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 108, 199
BspCNI CTCAG 1 cut(s) 172
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 68, 69
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 369
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 205, 237, 371
BstNSI RCATGY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 108, 199
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 67, 107
CseI GACGC 1 cut(s) 248
CviAII CATG 6 cut(s) 85, 130, 221, 227, 237, 404
CviJI RGCY 4 cut(s) 108, 194, 199, 254
CviKI_1 RGCY 4 cut(s) 108, 194, 199, 254
DdeI CTNAG 1 cut(s) 180
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 197
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 6 cut(s) 88, 133, 224, 230, 240, 407
FaqI GGGAC 1 cut(s) 80
FatI CATG 6 cut(s) 84, 129, 220, 226, 236, 403
FauNDI CATATG 1 cut(s) 124
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 354
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 108, 199
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 6 cut(s) 88, 133, 224, 230, 240, 407
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 4, 119, 295
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 35
Hpy188III TCNNGA 4 cut(s) 8, 299, 329, 415
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 18, 187, 208, 240, 400, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 237, 371
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 6 cut(s) 88, 133, 224, 230, 240, 407
KflI GGGWCCC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 7
LpnPI CCDG 8 cut(s) 21, 153, 173, 240, 295, 312, 375, 405
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 139
MluCI AATT 2 cut(s) 270, 449
MnlI CCTC 2 cut(s) 154, 175
MroI TCCGGA 1 cut(s) 7
MslI CAYNNNNRTG 3 cut(s) 89, 225, 432
MspI CCGG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 205, 237, 371
NdeI CATATG 1 cut(s) 124
NlaIII CATG 6 cut(s) 88, 133, 224, 230, 240, 407
NlaIV GGNNCC 2 cut(s) 68, 69
NspI RCATGY 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 432
PaeI GCATGC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 4, 119, 295
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 68, 69
PspPI GGNCC 2 cut(s) 67, 107
PspPPI RGGWCCY 1 cut(s) 67
RseI CAYNNNNRTG 3 cut(s) 89, 225, 432
Sau96I GGNCC 2 cut(s) 67, 107
SetI ASST 6 cut(s) 78, 146, 153, 186, 196, 318
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 3 cut(s) 89, 225, 432
SpeI ACTAGT 1 cut(s) 353
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 270, 449
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 349
TasI AATT 2 cut(s) 270, 449
TfiI GAWTC 3 cut(s) 4, 119, 295
TscAI CASTG 1 cut(s) 215
TspDTI ATGAA 5 cut(s) 17, 111, 225, 308, 420
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 67
XceI RCATGY 1 cut(s) 133
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.